Clone Sequence Records
BO13212.3prime Sequence
769 bp (717 high quality bases) assembled on 2006-05-08
> BO13212.3prime
ATGGTCTAGAAAGCTAGCCTCCGTTTAAGCTAAGCTGGGAAATGTGTTCG
TAGCCGAATCCAGTGATTTTGTGACTGGCAACTCGGTTGGCAAAGTCAAC
AGCCTCCGCTAGACTTCGACGAGCCTTGAGGGTGGCGTAGATGAATCCCG
CCATGAAACTGTCCCCGGCTCCCAGCGTGTCAACTACCTTGTCCTGTTTA
TAGGACGACATTTCATAGTAGTTTCCATTAGCATCCATAGCTCCAGCTCC
GGCGCTTCCCCAGGGACAAATGAAGACAGGCTTTGGACCACCTTCGGGAA
TTTTGGAGGCCAACTCCTCGCACGACTGCCGCGGTGTCTTCCAACCCAAC
TGACCAGCCAGCTCCTTGGAGAAGACCACAAAATCGCAGGGCGCACACAA
TTCCTGGTTTTGTTCATACCTCGTTTCGAAGTCCAACGAGATAATGATGC
CTTGTCCGGTCCTTTGGTTGTACTCCCGGATGCTTTGCATCATCTTTAAG
GTGTGCGGCGTGTTGCGAGCCTCGAAGTGTACCCATCCATACTGCGAAAG
GTTTATCTTGCTGAAGTCCTCATAGGTGGTCTGCGGGTAGTCCTTATTGC
AGTGGATAATGGTGCGGGTGCCGGAATCCTGAGCCAGGATCACAGAGGAG
AATGGCGGATCCCTGTCCGTGAAGGGACAGTCATTCGTGCCGATTTCCCG
CTTCGAGAGATCGTCGAGAAACACTCGGAATCCATCCGACCTGCTGAGCA
TTCCAAAGAAGTCCACCTT
BO13212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-PA | 921 | CG7328-RA | 169..913 | 769..25 | 3700 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-RA | 1398 | CG7328-RA | 493..1237 | 769..25 | 3710 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20139371..20140115 | 25..769 | 3710 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:51:46 has no hits.
BO13212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:01 Download gff for
BO13212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-PA | 169..918 | 19..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:46 Download gff for
BO13212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-PA | 169..918 | 19..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:53:22 Download gff for
BO13212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 493..1242 | 19..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:59:14 Download gff for
BO13212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 493..1242 | 19..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:59:14 Download gff for
BO13212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20139366..20140115 | 19..769 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:53:22 Download gff for
BO13212.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20132466..20133215 | 19..769 | 99 | | Plus |
BO13212.5prime Sequence
843 bp (747 high quality bases) assembled on 2006-05-08
> BO13212.5prime
GAAGTTATCCCTCGACATGACCCAAGTGAAATCTGTACTTTGCGTGGGTT
GCACGGTGATTGACTTCGTGACCATCAATGGGAGCTATCCTATGGAGGAC
ACCGATCGGCGATGCCTGGATGGGTTCTGGCAACGTGGCGGAAACGCCTC
TAATGTGAGTACTGTGCTCCGGGTTCTTGGATGCAAGGTGGACTTCTTTG
GAATGCTCAGCAGGTCGGATGGATTCCGAGTGCTTCTCGACGATCTCTCG
AAGCGGGAAATCGGCACGAATGACTGTCCCTTCACGGACAGGGATCCGCC
ATTCTCCTCTGTGATCCTGGCTCAGGATTCCGGCACCCGCACCATTATCC
ACTGCAATAAGGACTACCCGCAGACCACCTATGAGGACTTCAGCAAGATA
AACCTTTCGCAGTATGGATGGGTACACTTCGAGGCTCGCAACACGCCGCA
CACCTTAAAGATGATGCAAAGCATCCGGGAGTACAACCAAAGGACCGGAC
AAGGCATCATTATCTCGTTGGACTTCGAAACGAGGTATGAACAAAACCAG
GAATTGTGTGCGCCCTGCGATTTTGTGGTCTTCTCCAAGGAGCTGGCTGG
TCAGTTGGGTTGGAAGACACCGCGGCAGTCGTGCGAGGAGTTGGCCTCCA
AAATTCCCGAAGGTGGTCCAAAGCCTGTCTTCATTTGTCCCTGGGGAAGC
GCCGGAGCTGGAGCTATGGATGCTAATGGAAACTACTATGAAATGTCGTC
CTATAAACAGGACAAGGTAGTTGACACGCTGGGAGCCGGGGACAGTTTCA
TGGCGGGATTCATCTACGCCACCCTCAAGGCTCGTCGAAGTCT
BO13212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-PA | 921 | CG7328-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-RA | 1398 | CG7328-RA | 325..1151 | 17..843 | 4135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20139457..20140283 | 843..17 | 4135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:00:41 has no hits.
BO13212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:02 Download gff for
BO13212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:47 Download gff for
BO13212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:15 Download gff for
BO13212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 325..1151 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:08 Download gff for
BO13212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 325..1151 | 17..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:08 Download gff for
BO13212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20139457..20140283 | 17..843 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:15 Download gff for
BO13212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20132557..20133383 | 17..843 | 100 | | Minus |
BO13212.complete Sequence
952 bp assembled on 2008-08-14
GenBank Submission: FJ632721
> BO13212.complete
GAAGTTATCCCTCGACATGACCCAAGTGAAATCTGTACTTTGCGTGGGTT
GCACGGTGATTGACTTCGTGACCATCAATGGGAGCTATCCTATGGAGGAC
ACCGATCGGCGATGCCTGGATGGGTTCTGGCAACGTGGCGGAAACGCCTC
TAATGTGAGTACTGTGCTCCGGGTTCTTGGATGCAAGGTGGACTTCTTTG
GAATGCTCAGCAGGTCGGATGGATTCCGAGTGCTTCTCGACGATCTCTCG
AAGCGGGAAATCGGCACGAATGACTGTCCCTTCACGGACAGGGATCCGCC
ATTCTCCTCTGTGATCCTGGCTCAGGATTCCGGCACCCGCACCATTATCC
ACTGCAATAAGGACTACCCGCAGACCACCTATGAGGACTTCAGCAAGATA
AACCTTTCGCAGTATGGATGGGTACACTTCGAGGCTCGCAACACGCCGCA
CACCTTAAAGATGATGCAAAGCATCCGGGAGTACAACCAAAGGACCGGAC
AAGGCATCATTATCTCGTTGGACTTCGAAACGAGGTATGAACAAAACCAG
GAATTGTGTGCGCCCTGCGATTTTGTGGTCTTCTCCAAGGAGCTGGCTGG
TCAGTTGGGTTGGAAGACACCGCGGCAGTCGTGCGAGGAGTTGGCCTCCA
AAATTCCCGAAGGTGGTCCAAAGCCTGTCTTCATTTGTCCCTGGGGAAGC
GCCGGAGCTGGAGCTATGGATGCTAATGGAAACTACTATGAAATGTCGTC
CTATAAACAGGACAAGGTAGTTGACACGCTGGGAGCCGGGGACAGTTTCA
TGGCGGGATTCATCTACGCCACCCTCAAGGCTCGTCGAAGTCTAGCGGAG
GCTGTTGACTTTGCCAACCGAGTTGCCAGTCACAAAATCACTGGATTCGG
CTACGAACACATTTCCCAGCTTAGCTTAACCAAGGCAAGCTTTCTAGACC
AT
BO13212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-RA | 921 | CG7328-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-RA | 1398 | CG7328-RA | 325..1242 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20139366..20140283 | 934..17 | 4590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:33:14 has no hits.
BO13212.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:50 Download gff for
BO13212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 223..1148 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:51 Download gff for
BO13212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 325..1242 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:17 Download gff for
BO13212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 223..1140 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:40 Download gff for
BO13212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7328-RA | 325..1242 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:40 Download gff for
BO13212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20139364..20140283 | 17..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:51 Download gff for
BO13212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20132464..20133383 | 17..936 | 99 | | Minus |
BO13212.pep Sequence
Translation from 16 to 952
> BO13212.pep
MTQVKSVLCVGCTVIDFVTINGSYPMEDTDRRCLDGFWQRGGNASNVSTV
LRVLGCKVDFFGMLSRSDGFRVLLDDLSKREIGTNDCPFTDRDPPFSSVI
LAQDSGTRTIIHCNKDYPQTTYEDFSKINLSQYGWVHFEARNTPHTLKMM
QSIREYNQRTGQGIIISLDFETRYEQNQELCAPCDFVVFSKELAGQLGWK
TPRQSCEELASKIPEGGPKPVFICPWGSAGAGAMDANGNYYEMSSYKQDK
VVDTLGAGDSFMAGFIYATLKARRSLAEAVDFANRVASHKITGFGYEHIS
QLSLTKASFLDH
BO13212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7328-PA | 306 | CG7328-PA | 1..306 | 1..306 | 1632 | 100 | Plus |
| CG7551-PB | 322 | CG7551-PB | 15..318 | 5..304 | 660 | 42.1 | Plus |
| CG12289-PA | 378 | CG12289-PA | 10..316 | 4..304 | 633 | 42 | Plus |
| CG7335-PA | 372 | CG7335-PA | 31..357 | 5..297 | 348 | 27.5 | Plus |
