Clone BO13214 Report

Search the DGRC for BO13214

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG6568-RA
Protein status:BO13214.pep: Imported from assembly
Sequenced Size:1588

Clone Sequence Records

BO13214.3prime Sequence

781 bp (702 high quality bases) assembled on 2006-05-08

> BO13214.3prime
ATGGTCTAGAAAGCTTGCAGATTCCAACTCTTGGCGCTTAAGGTTGCATA
GACCCGCAGCCACCACGATCATTTCATCAAGATAACCCAGCAATGACTTT
TGCTTAATAGCCGAATTATCCAGCATGCGGAATTCCCTTAAATAATCTAT
CATATCTCTCATTTGGGCTCTACAGGCGGGTTCTTGTGCGTTGAATGTGG
GTAGTTGAATCGCTGGAGCCCGCTTGGAAGTCAGTGCTCCGTCTACAACG
GATAGGGATTGCTGGCTTGCTAGCTGGCCACTCAAACGCTGTGCCTCGAA
TTTGGTAAGTGATCGCTTTGGTTCCGCCGCCGCCTCATCCTCATCCGCTG
AGTCGTGAGGATCTCCGAAGCCCGACCTGCGAGCACGGCGTACTGCTTTG
CCTGGTTCCGCGCATAGTGTTAGGTAATTGGGAATGACATCCCGAAATCT
GCTGGCCTCAAACAATTGAAGATCATCGCAACTACCAGGAAAGGCGCTAG
ACACATAGCTGATGATGCCATTTGTATTGATGCACAATATGAACTTATAG
CTGCCGCTGCCCAATCCCAGATCTATCGGCACGTCCGTTTCCACACACTC
GATCAACGAGCGTACATGCAACAGGTTGGCTCGGTAGTTCAGTGGGGTAT
GTTTGAAGCGCTCGTTGTGATGCCGTGCATCTGGCCAACGAATCAGTGGA
CGGAGGTAACGGGCCAGCTTGATAAGGGTGCGCTTAAATGTGTCCTCGAC
ATCTGATTCGCTCAGCTCAAAGTGCTCGGGC

BO13214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-PA 1557 CG6568-RA 794..1554 779..19 3805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-RB 1721 CG6568-RB 781..1541 779..19 3805 100 Minus
CG6568-RA 1813 CG6568-RA 873..1633 779..19 3805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17405484..17405984 19..519 2505 100 Plus
2R 25286936 2R 17406036..17406297 518..779 1310 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:31:39 has no hits.

BO13214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:05 Download gff for BO13214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6568-PA 792..1557 15..781 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:52 Download gff for BO13214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6568-PA 792..1557 15..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:55:18 Download gff for BO13214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 871..1636 15..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:22 Download gff for BO13214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 871..1636 15..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:22 Download gff for BO13214.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17405480..17405983 15..518 99 <- Plus
2R 17406037..17406298 519..781 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:55:18 Download gff for BO13214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13292985..13293488 15..518 99 <- Plus
arm_2R 13293542..13293803 519..781 99   Plus

BO13214.5prime Sequence

875 bp (770 high quality bases) assembled on 2006-05-08

> BO13214.5prime
GAAGTTATCACTCGACATGGCGTTGACAATTACAAAATTTCGAACTTCGA
GGGGGATGGTGGTGGCCGTACAGCCCACAGTGGTGTTGAGCCCCAAAATA
CCAGATTCCCAGGATAACGAAAAGAAACCGTTTTCAAAATCGGAGCCGGG
AAATGCAACTGTGAGAGTTAATGCAGGTGGTATAGTTCTTAACAAAATAC
CAGCGATTATAAGGCCAAGTATGAAGAGAGCAGCAACAACAAAGATGACT
GGAGCCACGGCTGCGGGAGCAACAACAACAACATCGTCAACAGGTGCAGT
GGGATATCCCGTTCTCAAAACACCCAAGTATGTGGTTCAGACTAGTCCGA
GTGGATCCTCTGGCCATCAGCTCCAGATGCTGGCGAGGAAGGACACTCAA
AGTCTGGGAGTGGCCATCAATTCACTGCCGCCCAACACAATCATCAAAGC
AACCACAAGACCTTCACAAACAGCGCCTTTGACACCAAACTCAGCGGCTG
TCACGCCAAGCACGCCGAGCAGTAGCAGGAATTCCACTCAGTCCACACCA
ACTGTGGTACCTGATGCGAGAGTTTCCTCCGCCGTGCGCCAAGCTGTGTT
CATCAAGAGGGAGCTACCCCAGCCGCAGAGGAGCATGCGAAATATGACAC
TTGGTTTGGTGGAACAGGCGCCACTGCTTCATTTGGGTGTTGCGCCACAG
CACCTGTCACTGCTGAAACGCCATATCTGCCGCAATGCTAATGTCACCCA
CTTGGACTGTTGCTTGACTCTAAGGAAACTCAAACAAAACGAGCACTTCG
CCCTGTTGGCCGAGCACTTTGAGCTGAGCGAATCAGATGTCGAGGACACA
TTTAAGCGCACCCTTATCCAGCTGG

BO13214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-PA 1557 CG6568-RA 1..859 17..875 4270 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-RA 1813 CG6568-RA 80..938 17..875 4280 99.9 Plus
CG6568-RB 1721 CG6568-RB 94..846 123..875 3750 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17406232..17406801 875..306 2835 99.8 Minus
2R 25286936 2R 17406875..17407057 305..123 915 100 Minus
2R 25286936 2R 17407241..17407348 124..17 540 100 Minus
Blast to na_te.dros performed 2015-02-12 19:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 2000..2073 216..289 145 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2930..3006 227..300 144 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2377..2446 229..298 143 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1479..1587 191..297 142 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6817 229..299 137 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6790 229..293 134 70.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6032..6094 233..298 134 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6835 229..299 130 64.8 Plus
roo 9092 roo DM_ROO 9092bp 1071..1141 229..299 130 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2420..2484 227..291 127 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2405..2510 194..299 125 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2395 229..292 122 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2419 229..298 116 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6822..6898 218..293 112 62.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4260..4290 422..452 110 83.9 Plus

BO13214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:05 Download gff for BO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6568-PA 1..859 17..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:53 Download gff for BO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6568-PA 1..859 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:31 Download gff for BO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 75..938 11..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:01:56 Download gff for BO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 75..938 11..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:01:56 Download gff for BO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17406875..17407055 125..305 100 <- Minus
2R 17407241..17407353 11..124 97   Minus
2R 17406232..17406801 306..875 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:31 Download gff for BO13214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13293737..13294306 306..875 99 <- Minus
arm_2R 13294380..13294560 125..305 100 <- Minus
arm_2R 13294746..13294858 11..124 97   Minus

BO13214.complete Sequence

1588 bp assembled on 2011-06-28

GenBank Submission: KX795790

> BO13214.complete
GAAGTTATCACTCGACATGGCGTTGACAATTACAAAATTTCGAACTTCGA
GGGGGATGGTGGTGGCCGTACAGCCCACAGTGGTGTTGAGCCCCAAAATA
CCAGATTCCCAGGATAACGAAAAGAAACCGTTTTCAAAATCGGAGCCGGG
AAATGCAACTGTGAGAGTTAATGCAGGTGGTATAGTTCTTAACAAAATAC
CAGCGATTATAAGGCCAAGTATGAAGAGAGCAGCAACAACAAAGATGACT
GGAGCCACGGCTGCGGGAGCAACAACAACAACATCGTCAACAGGTGCAGT
GGGATATCCCGTTCTCAAAACACCCAAGTATGTGGTTCAGACTAGTCCGA
GTGGATCCTCTGGCCATCAGCTCCAGATGCTGGCGAGGAAGGACACTCAA
AGTCTGGGAGTGGCCATCAATTCACTGCCGCCCAACACAATCATCAAAGC
AACCACAAGACCTTCACAAACAGCGCCTTTGACACCAAACTCAGCGGCTG
TCACGCCAAGCACGCCGAGCAGTAGCAGGAATTCCACTCAGTCCACACCA
ACTGTGGTACCTGATGCGAGAGTTTCCTCCGCCGTGCGCCAAGCTGTGTT
CATCAAGAGGGAGCTACCCCAGCCGCAGAGGAGCATGCGAAATATGACAC
TTGGTTTGGTGGAACAGGCGCCACTGCTTCATTTGGGTGTTGCGCCACAG
CACCTGTCACTGCTGAAACGCCATATCTGCCGCAATGCTAATGTCACCCA
CTTGGACTGTTGCTTGACTCTAAGGAAACTCAAACAAAACGAGCACTTCG
CCCTGTTGGCCGAGCACTTTGAGCTGAGCGAATCAGATGTCGAGGACACA
TTTAAGCGCACCCTTATCAAGCTGGCCCGTTACCTCCGTCCACTGATTCG
TTGGCCAGATGCACGGCATCACAACGAGCGCTTCAAACATACCCCACTGA
ACTACCGAGCCAACCTGTTGCATGTACGCTCGTTGATCGAGTGTGTGGAA
ACGGACGTGCCGATAGATCTGGGATTGGGCAGCGGCAGCTATAAGTTCAT
ATTGTGCATCAATACAAATGGCATCATCAGCTATGTGTCTAGCGCCTTTC
CTGGTAGTTGCGATGATCTTCAATTGTTTGAGGCCAGCAGATTTCGGGAT
GTCATTCCCAATTACCTAACACTATGCGCGGAACCAGGCAAAGCAGTACG
CCGTGCTCGCAGGTCGGGCTTCGGAGATCCTCACGACTCAGCGGATGAGG
ATGAGGCGGCGGCGGAACCAAAGCGATCACTTACCAAATTCGAGGCACAG
CGTTTGAGTGGCCAGCTAGCAAGCCAGCAATCCCTATCCGTTGTAGACGG
AGCACTGACTTCCAAGCGGGCTCCAGCGATTCAACTACCCACATTCAACG
CACAAGAACCCGCCTGTAGAGCCCAAATGAGAGATATGATAGATTATTTA
AGGGAATTCCGCATGCTGGATAATTCGGCTATTAAGCAAAAGTCATTGCT
GGGTTATCTTGATGAAATGATCGTGGTGGCTGCGGGTCTATGCAACCTTA
AGCGCCAAGAGTTGGAATCTGCAAGCTTTCTAGACCAT

BO13214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-RA 1557 CG6568-PA 1..1554 17..1570 7770 100 Plus
CG6568-RB 1353 CG6568-PB 1..1350 221..1570 6750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-RA 1813 CG6568-RA 80..1633 17..1570 7770 100 Plus
CG6568-RB 1721 CG6568-RB 94..1541 123..1570 7240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17406036..17406801 1071..306 3830 100 Minus
2R 25286936 2R 17405484..17405984 1570..1070 2505 100 Minus
2R 25286936 2R 17406875..17407057 305..123 915 100 Minus
2R 25286936 2R 17407241..17407348 124..17 540 100 Minus
Blast to na_te.dros performed 2014-11-26 16:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 2000..2073 216..289 145 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2930..3006 227..300 144 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2377..2446 229..298 143 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1479..1587 191..297 142 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6817 229..299 137 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6790 229..293 134 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6835 229..299 130 64.8 Plus
roo 9092 roo DM_ROO 9092bp 1071..1141 229..299 130 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2420..2484 227..291 127 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2405..2510 194..299 125 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2395 229..292 122 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2419 229..298 116 62.9 Plus

BO13214.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:12 Download gff for BO13214.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 78..1631 17..1572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:30 Download gff for BO13214.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 80..1633 17..1572 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:23 Download gff for BO13214.complete
Subject Subject Range Query Range Percent Splice Strand
CG6568-RA 80..1633 17..1572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:23 Download gff for BO13214.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17406875..17407055 125..305 100 <- Minus
2R 17407241..17407348 17..124 100   Minus
2R 17405482..17405983 1071..1572 99 <- Minus
2R 17406037..17406801 306..1070 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:30 Download gff for BO13214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13292987..13293488 1071..1572 99 <- Minus
arm_2R 13293542..13294306 306..1070 100 <- Minus
arm_2R 13294380..13294560 125..305 100 <- Minus
arm_2R 13294746..13294853 17..124 100   Minus

BO13214.pep Sequence

Translation from 16 to 1588

> BO13214.pep
MALTITKFRTSRGMVVAVQPTVVLSPKIPDSQDNEKKPFSKSEPGNATVR
VNAGGIVLNKIPAIIRPSMKRAATTKMTGATAAGATTTTSSTGAVGYPVL
KTPKYVVQTSPSGSSGHQLQMLARKDTQSLGVAINSLPPNTIIKATTRPS
QTAPLTPNSAAVTPSTPSSSRNSTQSTPTVVPDARVSSAVRQAVFIKREL
PQPQRSMRNMTLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCL
TLRKLKQNEHFALLAEHFELSESDVEDTFKRTLIKLARYLRPLIRWPDAR
HHNERFKHTPLNYRANLLHVRSLIECVETDVPIDLGLGSGSYKFILCINT
NGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPGKAVRRARRS
GFGDPHDSADEDEAAAEPKRSLTKFEAQRLSGQLASQQSLSVVDGALTSK
RAPAIQLPTFNAQEPACRAQMRDMIDYLREFRMLDNSAIKQKSLLGYLDE
MIVVAAGLCNLKRQELESASFLDH

BO13214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6568-PA 518 CG6568-PA 1..518 1..518 2632 100 Plus
CG6568-PB 450 CG6568-PB 1..450 69..518 2294 100 Plus