Clone Sequence Records
BO13216.3prime Sequence
539 bp (538 high quality bases) assembled on 2006-05-08
> BO13216.3prime
ATGGTCTAGAAAGCTTGCCCTGCTGGCAGCCAATAGGAACACGACCAGAC
TGAGCAGGTGCCTCATCAGTGACTCCAGGTCTGCGGGACTTGCGCCCTGC
CTCCTGGCCGAGTTGCAGGCATCCGCATCGCTGCAGCTCTGCAAGCACCC
GTGCACGTACTTGTCATCGTAGTAGAACTTTCCGCAATGCGACATTCTTA
TAATCTCTGTGTCGGTGGTCAGGGTGCCGCTGTCCAGGGCGCAACCTCTC
ACCGTTATCGTCTCGCCAGTTCCATCGTAATAGCCGGCGATCTTGATGCA
AGCGGTGGCCGGAAACAGGCCGTCACGCCCCTTCCGGCCGCCCATGCAGG
GCGACTCCAAAATGGCCGTTGAGTAGTTGTTGTGAAAGGGATCGTCGCAG
GCCTTGTTAGCACCATTGTATGACACGCATTTGAAACAGTCTATGCAGTA
GCCACTTCGAATGAACAGGCCAAGCAGCAGGGCCAAAATAGCGACGGTCT
CCATAATTGAACTGCCCACCGCCATGTCGACTGATAACT
BO13216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31323-PA | 510 | CG31323-RA | 1..507 | 525..19 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31323-RB | 1033 | CG31323-RB | 162..668 | 525..19 | 2535 | 100 | Minus |
CG31323-RA | 3489 | CG31323-RA | 285..791 | 525..19 | 2535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26184044..26184221 | 453..276 | 890 | 100 | Minus |
3R | 32079331 | 3R | 26184468..26184609 | 160..19 | 710 | 100 | Minus |
3R | 32079331 | 3R | 26184289..26184407 | 276..158 | 595 | 100 | Minus |
3R | 32079331 | 3R | 26183892..26183965 | 525..452 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:26:09 has no hits.
BO13216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:09 Download gff for
BO13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-PA | 1..510 | 18..525 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:58 Download gff for
BO13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-PA | 1..510 | 18..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:59 Download gff for
BO13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 279..795 | 13..533 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:08 Download gff for
BO13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 279..795 | 13..533 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:08 Download gff for
BO13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26183886..26183964 | 453..533 | 96 | -> | Minus |
3R | 26184045..26184221 | 276..452 | 100 | -> | Minus |
3R | 26184290..26184404 | 161..275 | 100 | -> | Minus |
3R | 26184468..26184613 | 13..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:59 Download gff for
BO13216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22009608..22009686 | 453..533 | 96 | -> | Minus |
arm_3R | 22009767..22009943 | 276..452 | 100 | -> | Minus |
arm_3R | 22010012..22010126 | 161..275 | 100 | -> | Minus |
arm_3R | 22010190..22010335 | 13..160 | 97 | | Minus |
BO13216.5prime Sequence
539 bp (538 high quality bases) assembled on 2006-05-08
> BO13216.5prime
GAAGTTATCAGTCGACATGGCGGTGGGCAGTTCAATTATGGAGACCGTCG
CTATTTTGGCCCTGCTGCTTGGCCTGTTCATTCGAAGTGGCTACTGCATA
GACTGTTTCAAATGCGTGTCATACAATGGTGCTAACAAGGCCTGCGACGA
TCCCTTTCACAACAACTACTCAACGGCCATTTTGGAGTCGCCCTGCATGG
GCGGCCGGAAGGGGCGTGACGGCCTGTTTCCGGCCACCGCTTGCATCAAG
ATCGCCGGCTATTACGATGGAACTGGCGAGACGATAACGGTGAGAGGTTG
CGCCCTGGACAGCGGCACCCTGACCACCGACACAGAGATTATAAGAATGT
CGCATTGCGGAAAGTTCTACTACGATGACAAGTACGTGCACGGGTGCTTG
CAGAGCTGCAGCGATGCGGATGCCTGCAACTCGGCCAGGAGGCAGGGCGC
AAGTCCCGCAGACCTGGAGTCACTGATGAGGCACCTGCTCAGTCTGGTCG
TGTTCCTATTGGCTGCCAGCAGGGCAAGCTTTCTAGACC
BO13216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31323-PA | 510 | CG31323-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31323-RB | 1033 | CG31323-RB | 162..668 | 17..523 | 2535 | 100 | Plus |
CG31323-RA | 3489 | CG31323-RA | 285..791 | 17..523 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26184044..26184221 | 89..266 | 890 | 100 | Plus |
3R | 32079331 | 3R | 26184468..26184609 | 382..523 | 710 | 100 | Plus |
3R | 32079331 | 3R | 26184289..26184407 | 266..384 | 595 | 100 | Plus |
3R | 32079331 | 3R | 26183892..26183965 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:48:27 has no hits.
BO13216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:10 Download gff for
BO13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-PA | 1..510 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:00 Download gff for
BO13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-PA | 1..510 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:06:28 Download gff for
BO13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 279..795 | 9..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:43 Download gff for
BO13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 279..795 | 9..529 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:43 Download gff for
BO13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26183886..26183964 | 9..89 | 96 | -> | Plus |
3R | 26184045..26184221 | 90..266 | 100 | -> | Plus |
3R | 26184290..26184404 | 267..381 | 100 | -> | Plus |
3R | 26184468..26184613 | 382..529 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:06:28 Download gff for
BO13216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22009608..22009686 | 9..89 | 96 | -> | Plus |
arm_3R | 22009767..22009943 | 90..266 | 100 | -> | Plus |
arm_3R | 22010012..22010126 | 267..381 | 100 | -> | Plus |
arm_3R | 22010190..22010335 | 382..529 | 97 | | Plus |
BO13216.complete Sequence
541 bp assembled on 2006-10-11
GenBank Submission: FJ632722
> BO13216.complete
GAAGTTATCAGTCGACATGGCGGTGGGCAGTTCAATTATGGAGACCGTCG
CTATTTTGGCCCTGCTGCTTGGCCTGTTCATTCGAAGTGGCTACTGCATA
GACTGTTTCAAATGCGTGTCATACAATGGTGCTAACAAGGCCTGCGACGA
TCCCTTTCACAACAACTACTCAACGGCCATTTTGGAGTCGCCCTGCATGG
GCGGCCGGAAGGGGCGTGACGGCCTGTTTCCGGCCACCGCTTGCATCAAG
ATCGCCGGCTATTACGATGGAACTGGCGAGACGATAACGGTGAGAGGTTG
CGCCCTGGACAGCGGCACCCTGACCACCGACACAGAGATTATAAGAATGT
CGCATTGCGGAAAGTTCTACTACGATGACAAGTACGTGCACGGGTGCTTG
CAGAGCTGCAGCGATGCGGATGCCTGCAACTCGGCCAGGAGGCAGGGCGC
AAGTCCCGCAGACCTGGAGTCACTGATGAGGCACCTGCTCAGTCTGGTCG
TGTTCCTATTGGCTGCCAGCAGGGCAAGCTTTCTAGACCAT
BO13216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31323-RB | 510 | CG31323-PB | 1..507 | 17..523 | 2535 | 100 | Plus |
CG31323-RA | 510 | CG31323-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31323-RB | 1033 | CG31323-RB | 162..668 | 17..523 | 2535 | 100 | Plus |
CG31323-RA | 3489 | CG31323-RA | 285..791 | 17..523 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26184044..26184221 | 89..266 | 890 | 100 | Plus |
3R | 32079331 | 3R | 26184468..26184609 | 382..523 | 710 | 100 | Plus |
3R | 32079331 | 3R | 26184289..26184407 | 266..384 | 595 | 100 | Plus |
3R | 32079331 | 3R | 26183892..26183965 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:02:17 has no hits.
BO13216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:20 Download gff for
BO13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 1..510 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:06 Download gff for
BO13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 277..793 | 9..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:06 Download gff for
BO13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 285..791 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:21 Download gff for
BO13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 277..793 | 9..529 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:50 Download gff for
BO13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31323-RA | 285..791 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:50 Download gff for
BO13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26184290..26184404 | 267..381 | 100 | -> | Plus |
3R | 26184468..26184609 | 382..525 | 98 | | Plus |
3R | 26183892..26183964 | 17..89 | 100 | -> | Plus |
3R | 26184045..26184221 | 90..266 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:06 Download gff for
BO13216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22010012..22010126 | 267..381 | 100 | -> | Plus |
arm_3R | 22010190..22010331 | 382..525 | 98 | | Plus |
arm_3R | 22009614..22009686 | 17..89 | 100 | -> | Plus |
arm_3R | 22009767..22009943 | 90..266 | 100 | -> | Plus |
BO13216.pep Sequence
Translation from 16 to 541
> BO13216.pep
MAVGSSIMETVAILALLLGLFIRSGYCIDCFKCVSYNGANKACDDPFHNN
YSTAILESPCMGGRKGRDGLFPATACIKIAGYYDGTGETITVRGCALDSG
TLTTDTEIIRMSHCGKFYYDDKYVHGCLQSCSDADACNSARRQGASPADL
ESLMRHLLSLVVFLLAASRASFLDH
BO13216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31323-PB | 169 | CG31323-PB | 1..169 | 1..169 | 898 | 100 | Plus |
CG31323-PA | 169 | CG31323-PA | 1..169 | 1..169 | 898 | 100 | Plus |