Clone BO13216 Report

Search the DGRC for BO13216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG31323-RA
Protein status:BO13216.pep: validated full length
Sequenced Size:541

Clone Sequence Records

BO13216.3prime Sequence

539 bp (538 high quality bases) assembled on 2006-05-08

> BO13216.3prime
ATGGTCTAGAAAGCTTGCCCTGCTGGCAGCCAATAGGAACACGACCAGAC
TGAGCAGGTGCCTCATCAGTGACTCCAGGTCTGCGGGACTTGCGCCCTGC
CTCCTGGCCGAGTTGCAGGCATCCGCATCGCTGCAGCTCTGCAAGCACCC
GTGCACGTACTTGTCATCGTAGTAGAACTTTCCGCAATGCGACATTCTTA
TAATCTCTGTGTCGGTGGTCAGGGTGCCGCTGTCCAGGGCGCAACCTCTC
ACCGTTATCGTCTCGCCAGTTCCATCGTAATAGCCGGCGATCTTGATGCA
AGCGGTGGCCGGAAACAGGCCGTCACGCCCCTTCCGGCCGCCCATGCAGG
GCGACTCCAAAATGGCCGTTGAGTAGTTGTTGTGAAAGGGATCGTCGCAG
GCCTTGTTAGCACCATTGTATGACACGCATTTGAAACAGTCTATGCAGTA
GCCACTTCGAATGAACAGGCCAAGCAGCAGGGCCAAAATAGCGACGGTCT
CCATAATTGAACTGCCCACCGCCATGTCGACTGATAACT

BO13216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-PA 510 CG31323-RA 1..507 525..19 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-RB 1033 CG31323-RB 162..668 525..19 2535 100 Minus
CG31323-RA 3489 CG31323-RA 285..791 525..19 2535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26184044..26184221 453..276 890 100 Minus
3R 32079331 3R 26184468..26184609 160..19 710 100 Minus
3R 32079331 3R 26184289..26184407 276..158 595 100 Minus
3R 32079331 3R 26183892..26183965 525..452 370 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:26:09 has no hits.

BO13216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:09 Download gff for BO13216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31323-PA 1..510 18..525 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:41:58 Download gff for BO13216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31323-PA 1..510 18..525 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:59 Download gff for BO13216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 279..795 13..533 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:08 Download gff for BO13216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 279..795 13..533 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:08 Download gff for BO13216.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26183886..26183964 453..533 96 -> Minus
3R 26184045..26184221 276..452 100 -> Minus
3R 26184290..26184404 161..275 100 -> Minus
3R 26184468..26184613 13..160 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:59 Download gff for BO13216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22009608..22009686 453..533 96 -> Minus
arm_3R 22009767..22009943 276..452 100 -> Minus
arm_3R 22010012..22010126 161..275 100 -> Minus
arm_3R 22010190..22010335 13..160 97   Minus

BO13216.5prime Sequence

539 bp (538 high quality bases) assembled on 2006-05-08

> BO13216.5prime
GAAGTTATCAGTCGACATGGCGGTGGGCAGTTCAATTATGGAGACCGTCG
CTATTTTGGCCCTGCTGCTTGGCCTGTTCATTCGAAGTGGCTACTGCATA
GACTGTTTCAAATGCGTGTCATACAATGGTGCTAACAAGGCCTGCGACGA
TCCCTTTCACAACAACTACTCAACGGCCATTTTGGAGTCGCCCTGCATGG
GCGGCCGGAAGGGGCGTGACGGCCTGTTTCCGGCCACCGCTTGCATCAAG
ATCGCCGGCTATTACGATGGAACTGGCGAGACGATAACGGTGAGAGGTTG
CGCCCTGGACAGCGGCACCCTGACCACCGACACAGAGATTATAAGAATGT
CGCATTGCGGAAAGTTCTACTACGATGACAAGTACGTGCACGGGTGCTTG
CAGAGCTGCAGCGATGCGGATGCCTGCAACTCGGCCAGGAGGCAGGGCGC
AAGTCCCGCAGACCTGGAGTCACTGATGAGGCACCTGCTCAGTCTGGTCG
TGTTCCTATTGGCTGCCAGCAGGGCAAGCTTTCTAGACC

BO13216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-PA 510 CG31323-RA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-RB 1033 CG31323-RB 162..668 17..523 2535 100 Plus
CG31323-RA 3489 CG31323-RA 285..791 17..523 2535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26184044..26184221 89..266 890 100 Plus
3R 32079331 3R 26184468..26184609 382..523 710 100 Plus
3R 32079331 3R 26184289..26184407 266..384 595 100 Plus
3R 32079331 3R 26183892..26183965 17..90 370 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:48:27 has no hits.

BO13216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:10 Download gff for BO13216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31323-PA 1..510 17..524 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:00 Download gff for BO13216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31323-PA 1..510 17..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:06:28 Download gff for BO13216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 279..795 9..529 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:43 Download gff for BO13216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 279..795 9..529 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:43 Download gff for BO13216.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26183886..26183964 9..89 96 -> Plus
3R 26184045..26184221 90..266 100 -> Plus
3R 26184290..26184404 267..381 100 -> Plus
3R 26184468..26184613 382..529 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:06:28 Download gff for BO13216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22009608..22009686 9..89 96 -> Plus
arm_3R 22009767..22009943 90..266 100 -> Plus
arm_3R 22010012..22010126 267..381 100 -> Plus
arm_3R 22010190..22010335 382..529 97   Plus

BO13216.complete Sequence

541 bp assembled on 2006-10-11

GenBank Submission: FJ632722

> BO13216.complete
GAAGTTATCAGTCGACATGGCGGTGGGCAGTTCAATTATGGAGACCGTCG
CTATTTTGGCCCTGCTGCTTGGCCTGTTCATTCGAAGTGGCTACTGCATA
GACTGTTTCAAATGCGTGTCATACAATGGTGCTAACAAGGCCTGCGACGA
TCCCTTTCACAACAACTACTCAACGGCCATTTTGGAGTCGCCCTGCATGG
GCGGCCGGAAGGGGCGTGACGGCCTGTTTCCGGCCACCGCTTGCATCAAG
ATCGCCGGCTATTACGATGGAACTGGCGAGACGATAACGGTGAGAGGTTG
CGCCCTGGACAGCGGCACCCTGACCACCGACACAGAGATTATAAGAATGT
CGCATTGCGGAAAGTTCTACTACGATGACAAGTACGTGCACGGGTGCTTG
CAGAGCTGCAGCGATGCGGATGCCTGCAACTCGGCCAGGAGGCAGGGCGC
AAGTCCCGCAGACCTGGAGTCACTGATGAGGCACCTGCTCAGTCTGGTCG
TGTTCCTATTGGCTGCCAGCAGGGCAAGCTTTCTAGACCAT

BO13216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-RB 510 CG31323-PB 1..507 17..523 2535 100 Plus
CG31323-RA 510 CG31323-PA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-RB 1033 CG31323-RB 162..668 17..523 2535 100 Plus
CG31323-RA 3489 CG31323-RA 285..791 17..523 2535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26184044..26184221 89..266 890 100 Plus
3R 32079331 3R 26184468..26184609 382..523 710 100 Plus
3R 32079331 3R 26184289..26184407 266..384 595 100 Plus
3R 32079331 3R 26183892..26183965 17..90 370 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:02:17 has no hits.

BO13216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:20 Download gff for BO13216.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..510 17..524 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:06 Download gff for BO13216.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 277..793 9..529 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:06 Download gff for BO13216.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 285..791 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:21 Download gff for BO13216.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 277..793 9..529 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:50 Download gff for BO13216.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 285..791 17..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:50 Download gff for BO13216.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26184290..26184404 267..381 100 -> Plus
3R 26184468..26184609 382..525 98   Plus
3R 26183892..26183964 17..89 100 -> Plus
3R 26184045..26184221 90..266 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:06 Download gff for BO13216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22010012..22010126 267..381 100 -> Plus
arm_3R 22010190..22010331 382..525 98   Plus
arm_3R 22009614..22009686 17..89 100 -> Plus
arm_3R 22009767..22009943 90..266 100 -> Plus

BO13216.pep Sequence

Translation from 16 to 541

> BO13216.pep
MAVGSSIMETVAILALLLGLFIRSGYCIDCFKCVSYNGANKACDDPFHNN
YSTAILESPCMGGRKGRDGLFPATACIKIAGYYDGTGETITVRGCALDSG
TLTTDTEIIRMSHCGKFYYDDKYVHGCLQSCSDADACNSARRQGASPADL
ESLMRHLLSLVVFLLAASRASFLDH

BO13216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-PB 169 CG31323-PB 1..169 1..169 898 100 Plus
CG31323-PA 169 CG31323-PA 1..169 1..169 898 100 Plus