Clone Sequence Records
BO13217.5prime Sequence
431 bp (430 high quality bases) assembled on 2006-05-08
> BO13217.5prime
GAAGTTATCAGTCGACATGGAGCCCATATCACATCTGGTGAAGTCCTCGC
TGCCCAATTACTTGTCAAGTCTGCCGGTTCCCGACAGCATCGGCGGCTGG
TTTAAGCTCTCCTTCAAGGATTGGTTGGCCCTGATCCCACCCACCGTGGT
GGTGGCCGGACTCGGCTACACCGCCTACCTGGCCTACTGTCCGGCGGCAC
GGGCCAGCTGCGCGGCCAAAAACAGCGGACGCTGCAACAACCACATCCGC
AAGAACGAGCCCAAGGTGGTGGACATGATCGACGTGGAGGATATTGCGGA
GAAGGCGGCCTTCTGTCGCTGCTGGAAGACCAAGAACTGGCCCTACTGCG
ATGGCAGTCATGGCGAGCACAACAAGCAGACTGGAGACAACGTCGGACCA
ATTGTCATCAAGAAGGCAAGCTTTCTAGACC
BO13217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1458-PA | 402 | CG1458-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cisd2-RA | 675 | CG1458-RA | 85..488 | 12..415 | 2005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29222546..29222769 | 337..114 | 1120 | 100 | Minus |
3R | 32079331 | 3R | 29223243..29223344 | 113..12 | 495 | 99 | Minus |
3R | 32079331 | 3R | 29222404..29222481 | 415..338 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:16:36 has no hits.
BO13217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:13 Download gff for
BO13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-PA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:04 Download gff for
BO13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-PA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:28 Download gff for
BO13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-RA | 85..494 | 12..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:39:51 Download gff for
BO13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cisd2-RA | 85..494 | 12..423 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:39:51 Download gff for
BO13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29222398..29222481 | 338..423 | 95 | <- | Minus |
3R | 29222546..29222769 | 114..337 | 100 | <- | Minus |
3R | 29223243..29223344 | 12..113 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:28 Download gff for
BO13217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25048120..25048203 | 338..423 | 95 | <- | Minus |
arm_3R | 25048268..25048491 | 114..337 | 100 | <- | Minus |
arm_3R | 25048965..25049066 | 12..113 | 99 | | Minus |
BO13217.3prime Sequence
431 bp (430 high quality bases) assembled on 2006-05-08
> BO13217.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGATGACAATTGGTCCGACGTTGTCTC
CAGTCTGCTTGTTGTGCTCGCCATGACTGCCATCGCAGTAGGGCCAGTTC
TTGGTCTTCCAGCAGCGACAGAAGGCCGCCTTCTCCGCAATATCCTCCAC
GTCGATCATGTCCACCACCTTGGGCTCGTTCTTGCGGATGTGGTTGTTGC
AGCGTCCGCTGTTTTTGGCCGCGCAGCTGGCCCGTGCCGCCGGACAGTAG
GCCAGGTAGGCGGTGTAGCCGAGTCCGGCCACCACCACGGTGGGTGGGAT
CAGGGCCAACCAATCCTTGAAGGAGAGCTTAAACCAGCCGCCGATGCTGT
CGGGAACCGGCAGACTTGACAAGTAATTGGGCAGCGAGGACTTCACCAGA
TGTGATATGGGCTCCATGTCGACTGATAACT
BO13217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1458-PA | 402 | CG1458-RA | 1..399 | 417..19 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cisd2-RA | 675 | CG1458-RA | 85..488 | 422..19 | 2005 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29222546..29222769 | 97..320 | 1120 | 100 | Plus |
3R | 32079331 | 3R | 29223243..29223344 | 321..422 | 495 | 99 | Plus |
3R | 32079331 | 3R | 29222404..29222481 | 19..96 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:52:13 has no hits.
BO13217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:12 Download gff for
BO13217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-PA | 1..402 | 18..417 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:01 Download gff for
BO13217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-PA | 1..402 | 18..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:36 Download gff for
BO13217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-RA | 85..494 | 11..422 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:01 Download gff for
BO13217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cisd2-RA | 85..494 | 11..422 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:01 Download gff for
BO13217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29222398..29222481 | 11..96 | 95 | <- | Plus |
3R | 29222546..29222769 | 97..320 | 100 | <- | Plus |
3R | 29223243..29223344 | 321..422 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:36 Download gff for
BO13217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25048120..25048203 | 11..96 | 95 | <- | Plus |
arm_3R | 25048268..25048491 | 97..320 | 100 | <- | Plus |
arm_3R | 25048965..25049066 | 321..422 | 99 | | Plus |
BO13217.complete Sequence
433 bp assembled on 2006-10-11
GenBank Submission: FJ632723
> BO13217.complete
GAAGTTATCAGTCGACATGGAGCCCATATCACATCTGGTGAAGTCCTCGC
TGCCCAATTACTTGTCAAGTCTGCCGGTTCCCGACAGCATCGGCGGCTGG
TTTAAGCTCTCCTTCAAGGATTGGTTGGCCCTGATCCCACCCACCGTGGT
GGTGGCCGGACTCGGCTACACCGCCTACCTGGCCTACTGTCCGGCGGCAC
GGGCCAGCTGCGCGGCCAAAAACAGCGGACGCTGCAACAACCACATCCGC
AAGAACGAGCCCAAGGTGGTGGACATGATCGACGTGGAGGATATTGCGGA
GAAGGCGGCCTTCTGTCGCTGCTGGAAGACCAAGAACTGGCCCTACTGCG
ATGGCAGTCATGGCGAGCACAACAAGCAGACTGGAGACAACGTCGGACCA
ATTGTCATCAAGAAGGCAAGCTTTCTAGACCAT
BO13217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cisd2-RA | 402 | CG1458-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cisd2-RA | 675 | CG1458-RA | 85..488 | 12..415 | 2005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29222546..29222769 | 337..114 | 1120 | 100 | Minus |
3R | 32079331 | 3R | 29223243..29223344 | 113..12 | 495 | 99 | Minus |
3R | 32079331 | 3R | 29222404..29222481 | 415..338 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:42:43 has no hits.
BO13217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:22 Download gff for
BO13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-RA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:08 Download gff for
BO13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-RA | 84..493 | 12..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:11 Download gff for
BO13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-RA | 90..488 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:22 Download gff for
BO13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1458-RA | 84..493 | 12..423 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:02 Download gff for
BO13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cisd2-RA | 90..488 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:02 Download gff for
BO13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29222402..29222481 | 338..417 | 97 | <- | Minus |
3R | 29222546..29222769 | 114..337 | 100 | <- | Minus |
3R | 29223243..29223339 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:11 Download gff for
BO13217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25048124..25048203 | 338..417 | 97 | <- | Minus |
arm_3R | 25048268..25048491 | 114..337 | 100 | <- | Minus |
arm_3R | 25048965..25049061 | 17..113 | 100 | | Minus |
BO13217.pep Sequence
Translation from 16 to 433
> BO13217.pep
MEPISHLVKSSLPNYLSSLPVPDSIGGWFKLSFKDWLALIPPTVVVAGLG
YTAYLAYCPAARASCAAKNSGRCNNHIRKNEPKVVDMIDVEDIAEKAAFC
RCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIKKASFLDH
BO13217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cisd2-PA | 133 | CG1458-PA | 1..133 | 1..133 | 733 | 100 | Plus |