Clone BO13217 Report

Search the DGRC for BO13217

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG1458-RA
Protein status:BO13217.pep: validated full length
Sequenced Size:433

Clone Sequence Records

BO13217.5prime Sequence

431 bp (430 high quality bases) assembled on 2006-05-08

> BO13217.5prime
GAAGTTATCAGTCGACATGGAGCCCATATCACATCTGGTGAAGTCCTCGC
TGCCCAATTACTTGTCAAGTCTGCCGGTTCCCGACAGCATCGGCGGCTGG
TTTAAGCTCTCCTTCAAGGATTGGTTGGCCCTGATCCCACCCACCGTGGT
GGTGGCCGGACTCGGCTACACCGCCTACCTGGCCTACTGTCCGGCGGCAC
GGGCCAGCTGCGCGGCCAAAAACAGCGGACGCTGCAACAACCACATCCGC
AAGAACGAGCCCAAGGTGGTGGACATGATCGACGTGGAGGATATTGCGGA
GAAGGCGGCCTTCTGTCGCTGCTGGAAGACCAAGAACTGGCCCTACTGCG
ATGGCAGTCATGGCGAGCACAACAAGCAGACTGGAGACAACGTCGGACCA
ATTGTCATCAAGAAGGCAAGCTTTCTAGACC

BO13217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1458-PA 402 CG1458-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cisd2-RA 675 CG1458-RA 85..488 12..415 2005 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29222546..29222769 337..114 1120 100 Minus
3R 32079331 3R 29223243..29223344 113..12 495 99 Minus
3R 32079331 3R 29222404..29222481 415..338 390 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:16:36 has no hits.

BO13217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:13 Download gff for BO13217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1458-PA 1..402 17..416 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:04 Download gff for BO13217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1458-PA 1..402 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:28 Download gff for BO13217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1458-RA 85..494 12..423 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:39:51 Download gff for BO13217.5prime
Subject Subject Range Query Range Percent Splice Strand
Cisd2-RA 85..494 12..423 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:39:51 Download gff for BO13217.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29222398..29222481 338..423 95 <- Minus
3R 29222546..29222769 114..337 100 <- Minus
3R 29223243..29223344 12..113 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:28 Download gff for BO13217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25048120..25048203 338..423 95 <- Minus
arm_3R 25048268..25048491 114..337 100 <- Minus
arm_3R 25048965..25049066 12..113 99   Minus

BO13217.3prime Sequence

431 bp (430 high quality bases) assembled on 2006-05-08

> BO13217.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGATGACAATTGGTCCGACGTTGTCTC
CAGTCTGCTTGTTGTGCTCGCCATGACTGCCATCGCAGTAGGGCCAGTTC
TTGGTCTTCCAGCAGCGACAGAAGGCCGCCTTCTCCGCAATATCCTCCAC
GTCGATCATGTCCACCACCTTGGGCTCGTTCTTGCGGATGTGGTTGTTGC
AGCGTCCGCTGTTTTTGGCCGCGCAGCTGGCCCGTGCCGCCGGACAGTAG
GCCAGGTAGGCGGTGTAGCCGAGTCCGGCCACCACCACGGTGGGTGGGAT
CAGGGCCAACCAATCCTTGAAGGAGAGCTTAAACCAGCCGCCGATGCTGT
CGGGAACCGGCAGACTTGACAAGTAATTGGGCAGCGAGGACTTCACCAGA
TGTGATATGGGCTCCATGTCGACTGATAACT

BO13217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1458-PA 402 CG1458-RA 1..399 417..19 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cisd2-RA 675 CG1458-RA 85..488 422..19 2005 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29222546..29222769 97..320 1120 100 Plus
3R 32079331 3R 29223243..29223344 321..422 495 99 Plus
3R 32079331 3R 29222404..29222481 19..96 390 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:52:13 has no hits.

BO13217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:12 Download gff for BO13217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1458-PA 1..402 18..417 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:01 Download gff for BO13217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1458-PA 1..402 18..417 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:36 Download gff for BO13217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1458-RA 85..494 11..422 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:01 Download gff for BO13217.3prime
Subject Subject Range Query Range Percent Splice Strand
Cisd2-RA 85..494 11..422 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:01 Download gff for BO13217.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29222398..29222481 11..96 95 <- Plus
3R 29222546..29222769 97..320 100 <- Plus
3R 29223243..29223344 321..422 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:36 Download gff for BO13217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25048120..25048203 11..96 95 <- Plus
arm_3R 25048268..25048491 97..320 100 <- Plus
arm_3R 25048965..25049066 321..422 99   Plus

BO13217.complete Sequence

433 bp assembled on 2006-10-11

GenBank Submission: FJ632723

> BO13217.complete
GAAGTTATCAGTCGACATGGAGCCCATATCACATCTGGTGAAGTCCTCGC
TGCCCAATTACTTGTCAAGTCTGCCGGTTCCCGACAGCATCGGCGGCTGG
TTTAAGCTCTCCTTCAAGGATTGGTTGGCCCTGATCCCACCCACCGTGGT
GGTGGCCGGACTCGGCTACACCGCCTACCTGGCCTACTGTCCGGCGGCAC
GGGCCAGCTGCGCGGCCAAAAACAGCGGACGCTGCAACAACCACATCCGC
AAGAACGAGCCCAAGGTGGTGGACATGATCGACGTGGAGGATATTGCGGA
GAAGGCGGCCTTCTGTCGCTGCTGGAAGACCAAGAACTGGCCCTACTGCG
ATGGCAGTCATGGCGAGCACAACAAGCAGACTGGAGACAACGTCGGACCA
ATTGTCATCAAGAAGGCAAGCTTTCTAGACCAT

BO13217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cisd2-RA 402 CG1458-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cisd2-RA 675 CG1458-RA 85..488 12..415 2005 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29222546..29222769 337..114 1120 100 Minus
3R 32079331 3R 29223243..29223344 113..12 495 99 Minus
3R 32079331 3R 29222404..29222481 415..338 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:42:43 has no hits.

BO13217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:22 Download gff for BO13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG1458-RA 1..402 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:08 Download gff for BO13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG1458-RA 84..493 12..423 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:11 Download gff for BO13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG1458-RA 90..488 17..417 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:22 Download gff for BO13217.complete
Subject Subject Range Query Range Percent Splice Strand
CG1458-RA 84..493 12..423 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:02 Download gff for BO13217.complete
Subject Subject Range Query Range Percent Splice Strand
Cisd2-RA 90..488 17..417 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:02 Download gff for BO13217.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29222402..29222481 338..417 97 <- Minus
3R 29222546..29222769 114..337 100 <- Minus
3R 29223243..29223339 17..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:11 Download gff for BO13217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25048124..25048203 338..417 97 <- Minus
arm_3R 25048268..25048491 114..337 100 <- Minus
arm_3R 25048965..25049061 17..113 100   Minus

BO13217.pep Sequence

Translation from 16 to 433

> BO13217.pep
MEPISHLVKSSLPNYLSSLPVPDSIGGWFKLSFKDWLALIPPTVVVAGLG
YTAYLAYCPAARASCAAKNSGRCNNHIRKNEPKVVDMIDVEDIAEKAAFC
RCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIKKASFLDH

BO13217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cisd2-PA 133 CG1458-PA 1..133 1..133 733 100 Plus