Clone BO13221 Report

Search the DGRC for BO13221

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlD-RA
Protein status:BO13221.pep: Imported from assembly
Sequenced Size:802

Clone Sequence Records

BO13221.3prime Sequence

681 bp (595 high quality bases) assembled on 2006-05-08

> BO13221.3prime
ATGGTCTAGAAAGCTTGCCTTGACGCGGAAACGACGCAGATTGGGTGGCA
GGTAATCCTGGCCAGCCACCACATTGGCGGGCAGGTACTCCGAGCTGGGA
GCAGCTGCAGCAACGGCTGGGATGGCAGCAGCCTGGGCTGGAGACGAGGC
AAAGTTCAGGACAGGAGCACGACCCTCGTTGGAGATGCGAGACACGCCGG
GCAATTGGTTGTACTGGTTCTGGATGGCCAGTTGGGCATTAGCCGCATCC
TCTGGAGTGCGGTACTTGACGAAGTGCACCTCTGGTTTGTTGGTGGAGCT
CGTCTTCAGGGCATTCAGTTGCTTAGCCAGGTTGGACACATCGGACTGTT
TGGTGAGAACATAGATGGCGGTCTCCTGCTGAGCAGACTGCTTGGCCAAC
TGGAGGGCAGCGCGCTCGAAGCCCTGATTTTCGGGAGTGCGAATGAAGAC
GACGCGGAGGTTCTTTTTCAGGGAGTTGGCGATCTGCTGGTTGCTGGCAC
CCTCATCGTACTGTTCCTCGGGGGCGGCGTAGCTGTAGAACTCCTTCTGG
AACTCCTCTACCAAAGGTGCAATCTGGGGAGCAACAGGTGCTTCAATGGG
CTGGGAGAGGACTGCTTCGCCACTCTGCACGGGCAGCACCTGCGACGGAA
GTTCTCCAATCACCTGACCACTTCCGGGCAG

BO13221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14243-PA 771 CG14243-RA 106..768 681..19 3315 100 Minus
CG5476-PA 930 CG5476-RA 687..740 298..245 170 92.5 Minus
CG6460-PA 744 CG6460-RA 520..557 282..245 165 97.3 Minus
CG5471-PA 924 CG5471-RA 628..665 282..245 165 97.3 Minus
CG6447-PB 840 CG6447-RB 622..659 282..245 165 97.3 Minus
CG6447-PA 858 CG6447-RA 640..677 282..245 165 97.3 Minus
CG6478-PA 861 CG6478-RA 640..677 282..245 165 97.3 Minus
CG6460-PA 744 CG6460-RA 404..443 398..359 150 95 Minus
CG5471-PA 924 CG5471-RA 512..551 398..359 150 95 Minus
CG5468-PA 867 CG5468-RA 652..686 282..248 150 97.1 Minus
CG6452-PA 690 CG6452-RA 442..491 282..233 150 92 Minus
CG14250-PA 738 CG14250-RA 493..532 282..243 150 95 Minus
CG5476-PA 930 CG5476-RA 589..626 396..359 140 94.7 Minus
CG6447-PB 840 CG6447-RB 508..545 396..359 140 94.7 Minus
CG6447-PA 858 CG6447-RA 526..563 396..359 140 94.7 Minus
CG6478-PA 861 CG6478-RA 526..563 396..359 140 94.7 Minus
CG5468-PA 867 CG5468-RA 538..575 396..359 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlD-RA 965 CG14243-RA 156..818 681..19 3315 100 Minus
TwdlN-RA 1088 CG5476-RA 651..845 396..202 360 79.6 Minus
TwdlL-RA 1002 CG6447-RA 576..770 396..202 315 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26640245..26640907 681..19 3315 100 Minus
3R 32079331 3R 26632519..26632713 396..202 360 79 Minus
3R 32079331 3R 26624819..26625013 202..396 315 77.4 Plus
3R 32079331 3R 26622713..26622903 206..396 295 77 Plus
3R 32079331 3R 26619781..26619971 396..206 295 77 Minus
3R 32079331 3R 26656932..26657146 471..257 265 74.9 Minus
3R 32079331 3R 26628139..26628304 233..398 260 77.1 Plus
3R 32079331 3R 26630368..26630533 398..233 245 76.5 Minus
3R 32079331 3R 26626194..26626256 220..282 210 88.9 Plus
3R 32079331 3R 26620828..26620903 221..296 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-10 16:54:49 has no hits.

BO13221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:17 Download gff for BO13221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14243-PA 106..771 15..681 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:10 Download gff for BO13221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14243-PA 106..771 15..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:46 Download gff for BO13221.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 156..821 15..681 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:23 Download gff for BO13221.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 156..821 15..681 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:23 Download gff for BO13221.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26640245..26640910 15..681 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:46 Download gff for BO13221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22465967..22466632 15..681 99   Minus

BO13221.5prime Sequence

800 bp (740 high quality bases) assembled on 2006-05-08

> BO13221.5prime
GAAGTTATCACTCGACATGCGTGCTTTTATCGTCCTCTGTCTGTTGGCCG
TGAGCTGCAGTGCCGATAAACTGGGCTACAACTACCAACCCGTGGCACAT
GCCGATGAGGGTCTGTCCTTCCTGCCCGGAAGTGGTCAGGTGATTGGAGA
ACTTCCGTCGCAGGTGCTGCCCGTGCAGAGTGGCGAAGCAGTCCTCTCCC
AGCCCATTGAAGCACCTGTTGCTCCCCAGATTGCACCTTTGGTAGAGGAG
TTCCAGAAGGAGTTCTACAGCTACGCCGCCCCCGAGGAACAGTACGATGA
GGGTGCCAGCAACCAGCAGATCGCCAACTCCCTGAAAAAGAACCTCCGCG
TCGTCTTCATTCGCACTCCCGAAAATCAGGGCTTCGAGCGCGCTGCCCTC
CAGTTGGCCAAGCAGTCTGCTCAGCAGGAGACCGCCATCTATGTTCTCAC
CAAACAGTCCGATGTGTCCAACCTGGCTAAGCAACTGAATGCCCTGAAGA
CGAGCTCCACCAACAAACCAGAGGTGCACTTCGTCAAGTACCGCACTCCA
GAGGATGCGGCTAATGCCCAACTGGCCATCCAGAACCAGTACAACCAATT
GCCCGGCGTGTCTCGCATCTCCAACGAGGGTCGTGCTCCTGTCCTGAACT
TTGCCTCGTCTCCAGCCCAGGCTGCTGCCATCCCAGCCGTTGCTGCAGCT
GCTCCCAGCTCGGAGTACCTGCCCGCCAATGTGGTGGCTGGCCAGGATTA
CCTGCCACCCAATCTGCGTCGTTTCCGCGTCAAGGCAAGCTTTCTAGACC

BO13221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14243-PA 771 CG14243-RA 1..768 17..784 3840 100 Plus
CG5476-PA 930 CG5476-RA 687..740 505..558 170 92.5 Plus
CG6460-PA 744 CG6460-RA 520..557 521..558 165 97.3 Plus
CG5471-PA 924 CG5471-RA 628..665 521..558 165 97.3 Plus
CG6447-PB 840 CG6447-RB 622..659 521..558 165 97.3 Plus
CG6447-PA 858 CG6447-RA 640..677 521..558 165 97.3 Plus
CG6478-PA 861 CG6478-RA 640..677 521..558 165 97.3 Plus
CG6460-PA 744 CG6460-RA 404..443 405..444 150 95 Plus
CG5471-PA 924 CG5471-RA 512..551 405..444 150 95 Plus
CG5468-PA 867 CG5468-RA 652..686 521..555 150 97.1 Plus
CG6452-PA 690 CG6452-RA 442..491 521..570 150 92 Plus
CG14250-PA 738 CG14250-RA 493..532 521..560 150 95 Plus
CG5476-PA 930 CG5476-RA 589..626 407..444 140 94.7 Plus
CG6447-PB 840 CG6447-RB 508..545 407..444 140 94.7 Plus
CG6447-PA 858 CG6447-RA 526..563 407..444 140 94.7 Plus
CG6478-PA 861 CG6478-RA 526..563 407..444 140 94.7 Plus
CG5468-PA 867 CG5468-RA 538..575 407..444 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlD-RA 965 CG14243-RA 50..818 16..784 3845 100 Plus
TwdlN-RA 1088 CG5476-RA 651..845 407..601 360 79.6 Plus
TwdlL-RA 1002 CG6447-RA 576..770 407..601 315 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26640155..26640907 32..784 3765 100 Plus
3R 32079331 3R 26632519..26632713 407..601 360 79 Plus
3R 32079331 3R 26624819..26625013 601..407 315 77.4 Minus
3R 32079331 3R 26622713..26622903 597..407 295 77 Minus
3R 32079331 3R 26619781..26619971 407..597 295 77 Plus
3R 32079331 3R 26656932..26657146 332..546 265 74.9 Plus
3R 32079331 3R 26628139..26628304 570..405 260 77.1 Minus
3R 32079331 3R 26630368..26630533 405..570 245 76.5 Plus
3R 32079331 3R 26626194..26626256 583..521 210 88.9 Minus
3R 32079331 3R 26620828..26620903 582..507 185 82.9 Minus
Blast to na_te.dros performed on 2015-02-12 11:08:20 has no hits.

BO13221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:18 Download gff for BO13221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14243-PA 1..771 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:12 Download gff for BO13221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14243-PA 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:01 Download gff for BO13221.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 40..821 5..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:37 Download gff for BO13221.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 40..821 5..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:37 Download gff for BO13221.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26640155..26640910 32..788 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:01 Download gff for BO13221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22465877..22466632 32..788 99   Plus

BO13221.complete Sequence

802 bp assembled on 2008-08-15

GenBank Submission: FJ632724

> BO13221.complete
GAAGTTATCACTCGACATGCGTGCTTTTATCGTCCTCTGTCTGTTGGCCG
TGAGCTGCAGTGCCGATAAACTGGGCTACAACTACCAACCCGTGGCACAT
GCCGATGAGGGTCTGTCCTTCCTGCCCGGAAGTGGTCAGGTGATTGGAGA
ACTTCCGTCGCAGGTGCTGCCCGTGCAGAGTGGCGAAGCAGTCCTCTCCC
AGCCCATTGAAGCACCTGTTGCTCCCCAGATTGCACCTTTGGTAGAGGAG
TTCCAGAAGGAGTTCTACAGCTACGCCGCCCCCGAGGAACAGTACGATGA
GGGTGCCAGCAACCAGCAGATCGCCAACTCCCTGAAAAAGAACCTCCGCG
TCGTCTTCATTCGCACTCCCGAAAATCAGGGCTTCGAGCGCGCTGCCCTC
CAGTTGGCCAAGCAGTCTGCTCAGCAGGAGACCGCCATCTATGTTCTCAC
CAAACAGTCCGATGTGTCCAACCTGGCTAAGCAACTGAATGCCCTGAAGA
CGAGCTCCACCAACAAACCAGAGGTGCACTTCGTCAAGTACCGCACTCCA
GAGGATGCGGCTAATGCCCAACTGGCCATCCAGAACCAGTACAACCAATT
GCCCGGCGTGTCTCGCATCTCCAACGAGGGTCGTGCTCCTGTCCTGAACT
TTGCCTCGTCTCCAGCCCAGGCTGCTGCCATCCCAGCCGTTGCTGCAGCT
GCTCCCAGCTCGGAGTACCTGCCCGCCAATGTGGTGGCTGGCCAGGATTA
CCTGCCACCCAATCTGCGTCGTTTCCGCGTCAAGGCAAGCTTTCTAGACC
AT

BO13221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlD-RA 771 CG14243-PA 1..768 17..784 3840 100 Plus
TwdlN-RA 930 CG5476-PA 589..783 407..601 360 79 Plus
TwdlL-RA 858 CG6447-PA 526..720 407..601 315 77.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlD-RA 965 CG14243-RA 50..818 16..784 3845 100 Plus
TwdlN-RA 1088 CG5476-RA 651..845 407..601 360 79 Plus
TwdlL-RA 1002 CG6447-RA 576..770 407..601 315 77.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26640155..26640907 32..784 3765 100 Plus
3R 32079331 3R 26632519..26632713 407..601 360 79 Plus
3R 32079331 3R 26624819..26625013 601..407 315 77.4 Minus
3R 32079331 3R 26619781..26619971 407..597 295 77 Plus
3R 32079331 3R 26622713..26622903 597..407 295 77 Minus
3R 32079331 3R 26656932..26657146 332..546 265 74.9 Plus
3R 32079331 3R 26628139..26628304 570..405 260 77.1 Minus
3R 32079331 3R 26630368..26630533 405..570 245 76.5 Plus
3R 32079331 3R 26626194..26626256 583..521 210 88.9 Minus
3R 32079331 3R 26620828..26620903 582..507 185 82.9 Minus
Blast to na_te.dros performed on 2014-11-27 01:42:36 has no hits.

BO13221.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:28 Download gff for BO13221.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 39..820 5..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:07 Download gff for BO13221.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 51..818 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:53 Download gff for BO13221.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 50..817 17..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:25 Download gff for BO13221.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlD-RA 51..818 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:25 Download gff for BO13221.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26640155..26640907 32..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:07 Download gff for BO13221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22465877..22466629 32..786 99   Plus

BO13221.pep Sequence

Translation from 16 to 802

> BO13221.pep
MRAFIVLCLLAVSCSADKLGYNYQPVAHADEGLSFLPGSGQVIGELPSQV
LPVQSGEAVLSQPIEAPVAPQIAPLVEEFQKEFYSYAAPEEQYDEGASNQ
QIANSLKKNLRVVFIRTPENQGFERAALQLAKQSAQQETAIYVLTKQSDV
SNLAKQLNALKTSSTNKPEVHFVKYRTPEDAANAQLAIQNQYNQLPGVSR
ISNEGRAPVLNFASSPAQAAAIPAVAAAAPSSEYLPANVVAGQDYLPPNL
RRFRVKASFLDH

BO13221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlD-PA 256 CG14243-PA 1..256 1..256 1282 100 Plus
TwdlK-PA 247 CG6460-PA 1..247 1..255 594 50 Plus
TwdlJ-PB 274 CG5471-PB 1..273 1..254 582 51.3 Plus
TwdlM-PA 288 CG5468-PA 1..284 1..239 569 45.2 Plus
TwdlL-PA 285 CG6447-PA 1..280 1..239 559 45.3 Plus