Clone Sequence Records
BO13221.3prime Sequence
681 bp (595 high quality bases) assembled on 2006-05-08
> BO13221.3prime
ATGGTCTAGAAAGCTTGCCTTGACGCGGAAACGACGCAGATTGGGTGGCA
GGTAATCCTGGCCAGCCACCACATTGGCGGGCAGGTACTCCGAGCTGGGA
GCAGCTGCAGCAACGGCTGGGATGGCAGCAGCCTGGGCTGGAGACGAGGC
AAAGTTCAGGACAGGAGCACGACCCTCGTTGGAGATGCGAGACACGCCGG
GCAATTGGTTGTACTGGTTCTGGATGGCCAGTTGGGCATTAGCCGCATCC
TCTGGAGTGCGGTACTTGACGAAGTGCACCTCTGGTTTGTTGGTGGAGCT
CGTCTTCAGGGCATTCAGTTGCTTAGCCAGGTTGGACACATCGGACTGTT
TGGTGAGAACATAGATGGCGGTCTCCTGCTGAGCAGACTGCTTGGCCAAC
TGGAGGGCAGCGCGCTCGAAGCCCTGATTTTCGGGAGTGCGAATGAAGAC
GACGCGGAGGTTCTTTTTCAGGGAGTTGGCGATCTGCTGGTTGCTGGCAC
CCTCATCGTACTGTTCCTCGGGGGCGGCGTAGCTGTAGAACTCCTTCTGG
AACTCCTCTACCAAAGGTGCAATCTGGGGAGCAACAGGTGCTTCAATGGG
CTGGGAGAGGACTGCTTCGCCACTCTGCACGGGCAGCACCTGCGACGGAA
GTTCTCCAATCACCTGACCACTTCCGGGCAG
BO13221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14243-PA | 771 | CG14243-RA | 106..768 | 681..19 | 3315 | 100 | Minus |
CG5476-PA | 930 | CG5476-RA | 687..740 | 298..245 | 170 | 92.5 | Minus |
CG6460-PA | 744 | CG6460-RA | 520..557 | 282..245 | 165 | 97.3 | Minus |
CG5471-PA | 924 | CG5471-RA | 628..665 | 282..245 | 165 | 97.3 | Minus |
CG6447-PB | 840 | CG6447-RB | 622..659 | 282..245 | 165 | 97.3 | Minus |
CG6447-PA | 858 | CG6447-RA | 640..677 | 282..245 | 165 | 97.3 | Minus |
CG6478-PA | 861 | CG6478-RA | 640..677 | 282..245 | 165 | 97.3 | Minus |
CG6460-PA | 744 | CG6460-RA | 404..443 | 398..359 | 150 | 95 | Minus |
CG5471-PA | 924 | CG5471-RA | 512..551 | 398..359 | 150 | 95 | Minus |
CG5468-PA | 867 | CG5468-RA | 652..686 | 282..248 | 150 | 97.1 | Minus |
CG6452-PA | 690 | CG6452-RA | 442..491 | 282..233 | 150 | 92 | Minus |
CG14250-PA | 738 | CG14250-RA | 493..532 | 282..243 | 150 | 95 | Minus |
CG5476-PA | 930 | CG5476-RA | 589..626 | 396..359 | 140 | 94.7 | Minus |
CG6447-PB | 840 | CG6447-RB | 508..545 | 396..359 | 140 | 94.7 | Minus |
CG6447-PA | 858 | CG6447-RA | 526..563 | 396..359 | 140 | 94.7 | Minus |
CG6478-PA | 861 | CG6478-RA | 526..563 | 396..359 | 140 | 94.7 | Minus |
CG5468-PA | 867 | CG5468-RA | 538..575 | 396..359 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlD-RA | 965 | CG14243-RA | 156..818 | 681..19 | 3315 | 100 | Minus |
TwdlN-RA | 1088 | CG5476-RA | 651..845 | 396..202 | 360 | 79.6 | Minus |
TwdlL-RA | 1002 | CG6447-RA | 576..770 | 396..202 | 315 | 78.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26640245..26640907 | 681..19 | 3315 | 100 | Minus |
3R | 32079331 | 3R | 26632519..26632713 | 396..202 | 360 | 79 | Minus |
3R | 32079331 | 3R | 26624819..26625013 | 202..396 | 315 | 77.4 | Plus |
3R | 32079331 | 3R | 26622713..26622903 | 206..396 | 295 | 77 | Plus |
3R | 32079331 | 3R | 26619781..26619971 | 396..206 | 295 | 77 | Minus |
3R | 32079331 | 3R | 26656932..26657146 | 471..257 | 265 | 74.9 | Minus |
3R | 32079331 | 3R | 26628139..26628304 | 233..398 | 260 | 77.1 | Plus |
3R | 32079331 | 3R | 26630368..26630533 | 398..233 | 245 | 76.5 | Minus |
3R | 32079331 | 3R | 26626194..26626256 | 220..282 | 210 | 88.9 | Plus |
3R | 32079331 | 3R | 26620828..26620903 | 221..296 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:54:49 has no hits.
BO13221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:17 Download gff for
BO13221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14243-PA | 106..771 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:10 Download gff for
BO13221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14243-PA | 106..771 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:46 Download gff for
BO13221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 156..821 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:23 Download gff for
BO13221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 156..821 | 15..681 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:23 Download gff for
BO13221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26640245..26640910 | 15..681 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:46 Download gff for
BO13221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22465967..22466632 | 15..681 | 99 | | Minus |
BO13221.5prime Sequence
800 bp (740 high quality bases) assembled on 2006-05-08
> BO13221.5prime
GAAGTTATCACTCGACATGCGTGCTTTTATCGTCCTCTGTCTGTTGGCCG
TGAGCTGCAGTGCCGATAAACTGGGCTACAACTACCAACCCGTGGCACAT
GCCGATGAGGGTCTGTCCTTCCTGCCCGGAAGTGGTCAGGTGATTGGAGA
ACTTCCGTCGCAGGTGCTGCCCGTGCAGAGTGGCGAAGCAGTCCTCTCCC
AGCCCATTGAAGCACCTGTTGCTCCCCAGATTGCACCTTTGGTAGAGGAG
TTCCAGAAGGAGTTCTACAGCTACGCCGCCCCCGAGGAACAGTACGATGA
GGGTGCCAGCAACCAGCAGATCGCCAACTCCCTGAAAAAGAACCTCCGCG
TCGTCTTCATTCGCACTCCCGAAAATCAGGGCTTCGAGCGCGCTGCCCTC
CAGTTGGCCAAGCAGTCTGCTCAGCAGGAGACCGCCATCTATGTTCTCAC
CAAACAGTCCGATGTGTCCAACCTGGCTAAGCAACTGAATGCCCTGAAGA
CGAGCTCCACCAACAAACCAGAGGTGCACTTCGTCAAGTACCGCACTCCA
GAGGATGCGGCTAATGCCCAACTGGCCATCCAGAACCAGTACAACCAATT
GCCCGGCGTGTCTCGCATCTCCAACGAGGGTCGTGCTCCTGTCCTGAACT
TTGCCTCGTCTCCAGCCCAGGCTGCTGCCATCCCAGCCGTTGCTGCAGCT
GCTCCCAGCTCGGAGTACCTGCCCGCCAATGTGGTGGCTGGCCAGGATTA
CCTGCCACCCAATCTGCGTCGTTTCCGCGTCAAGGCAAGCTTTCTAGACC
BO13221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14243-PA | 771 | CG14243-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG5476-PA | 930 | CG5476-RA | 687..740 | 505..558 | 170 | 92.5 | Plus |
CG6460-PA | 744 | CG6460-RA | 520..557 | 521..558 | 165 | 97.3 | Plus |
CG5471-PA | 924 | CG5471-RA | 628..665 | 521..558 | 165 | 97.3 | Plus |
CG6447-PB | 840 | CG6447-RB | 622..659 | 521..558 | 165 | 97.3 | Plus |
CG6447-PA | 858 | CG6447-RA | 640..677 | 521..558 | 165 | 97.3 | Plus |
CG6478-PA | 861 | CG6478-RA | 640..677 | 521..558 | 165 | 97.3 | Plus |
CG6460-PA | 744 | CG6460-RA | 404..443 | 405..444 | 150 | 95 | Plus |
CG5471-PA | 924 | CG5471-RA | 512..551 | 405..444 | 150 | 95 | Plus |
CG5468-PA | 867 | CG5468-RA | 652..686 | 521..555 | 150 | 97.1 | Plus |
CG6452-PA | 690 | CG6452-RA | 442..491 | 521..570 | 150 | 92 | Plus |
CG14250-PA | 738 | CG14250-RA | 493..532 | 521..560 | 150 | 95 | Plus |
CG5476-PA | 930 | CG5476-RA | 589..626 | 407..444 | 140 | 94.7 | Plus |
CG6447-PB | 840 | CG6447-RB | 508..545 | 407..444 | 140 | 94.7 | Plus |
CG6447-PA | 858 | CG6447-RA | 526..563 | 407..444 | 140 | 94.7 | Plus |
CG6478-PA | 861 | CG6478-RA | 526..563 | 407..444 | 140 | 94.7 | Plus |
CG5468-PA | 867 | CG5468-RA | 538..575 | 407..444 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlD-RA | 965 | CG14243-RA | 50..818 | 16..784 | 3845 | 100 | Plus |
TwdlN-RA | 1088 | CG5476-RA | 651..845 | 407..601 | 360 | 79.6 | Plus |
TwdlL-RA | 1002 | CG6447-RA | 576..770 | 407..601 | 315 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26640155..26640907 | 32..784 | 3765 | 100 | Plus |
3R | 32079331 | 3R | 26632519..26632713 | 407..601 | 360 | 79 | Plus |
3R | 32079331 | 3R | 26624819..26625013 | 601..407 | 315 | 77.4 | Minus |
3R | 32079331 | 3R | 26622713..26622903 | 597..407 | 295 | 77 | Minus |
3R | 32079331 | 3R | 26619781..26619971 | 407..597 | 295 | 77 | Plus |
3R | 32079331 | 3R | 26656932..26657146 | 332..546 | 265 | 74.9 | Plus |
3R | 32079331 | 3R | 26628139..26628304 | 570..405 | 260 | 77.1 | Minus |
3R | 32079331 | 3R | 26630368..26630533 | 405..570 | 245 | 76.5 | Plus |
3R | 32079331 | 3R | 26626194..26626256 | 583..521 | 210 | 88.9 | Minus |
3R | 32079331 | 3R | 26620828..26620903 | 582..507 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:08:20 has no hits.
BO13221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:18 Download gff for
BO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14243-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:12 Download gff for
BO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14243-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:01 Download gff for
BO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 40..821 | 5..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:37 Download gff for
BO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 40..821 | 5..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:37 Download gff for
BO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26640155..26640910 | 32..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:01 Download gff for
BO13221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22465877..22466632 | 32..788 | 99 | | Plus |
BO13221.complete Sequence
802 bp assembled on 2008-08-15
GenBank Submission: FJ632724
> BO13221.complete
GAAGTTATCACTCGACATGCGTGCTTTTATCGTCCTCTGTCTGTTGGCCG
TGAGCTGCAGTGCCGATAAACTGGGCTACAACTACCAACCCGTGGCACAT
GCCGATGAGGGTCTGTCCTTCCTGCCCGGAAGTGGTCAGGTGATTGGAGA
ACTTCCGTCGCAGGTGCTGCCCGTGCAGAGTGGCGAAGCAGTCCTCTCCC
AGCCCATTGAAGCACCTGTTGCTCCCCAGATTGCACCTTTGGTAGAGGAG
TTCCAGAAGGAGTTCTACAGCTACGCCGCCCCCGAGGAACAGTACGATGA
GGGTGCCAGCAACCAGCAGATCGCCAACTCCCTGAAAAAGAACCTCCGCG
TCGTCTTCATTCGCACTCCCGAAAATCAGGGCTTCGAGCGCGCTGCCCTC
CAGTTGGCCAAGCAGTCTGCTCAGCAGGAGACCGCCATCTATGTTCTCAC
CAAACAGTCCGATGTGTCCAACCTGGCTAAGCAACTGAATGCCCTGAAGA
CGAGCTCCACCAACAAACCAGAGGTGCACTTCGTCAAGTACCGCACTCCA
GAGGATGCGGCTAATGCCCAACTGGCCATCCAGAACCAGTACAACCAATT
GCCCGGCGTGTCTCGCATCTCCAACGAGGGTCGTGCTCCTGTCCTGAACT
TTGCCTCGTCTCCAGCCCAGGCTGCTGCCATCCCAGCCGTTGCTGCAGCT
GCTCCCAGCTCGGAGTACCTGCCCGCCAATGTGGTGGCTGGCCAGGATTA
CCTGCCACCCAATCTGCGTCGTTTCCGCGTCAAGGCAAGCTTTCTAGACC
AT
BO13221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlD-RA | 771 | CG14243-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
TwdlN-RA | 930 | CG5476-PA | 589..783 | 407..601 | 360 | 79 | Plus |
TwdlL-RA | 858 | CG6447-PA | 526..720 | 407..601 | 315 | 77.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlD-RA | 965 | CG14243-RA | 50..818 | 16..784 | 3845 | 100 | Plus |
TwdlN-RA | 1088 | CG5476-RA | 651..845 | 407..601 | 360 | 79 | Plus |
TwdlL-RA | 1002 | CG6447-RA | 576..770 | 407..601 | 315 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26640155..26640907 | 32..784 | 3765 | 100 | Plus |
3R | 32079331 | 3R | 26632519..26632713 | 407..601 | 360 | 79 | Plus |
3R | 32079331 | 3R | 26624819..26625013 | 601..407 | 315 | 77.4 | Minus |
3R | 32079331 | 3R | 26619781..26619971 | 407..597 | 295 | 77 | Plus |
3R | 32079331 | 3R | 26622713..26622903 | 597..407 | 295 | 77 | Minus |
3R | 32079331 | 3R | 26656932..26657146 | 332..546 | 265 | 74.9 | Plus |
3R | 32079331 | 3R | 26628139..26628304 | 570..405 | 260 | 77.1 | Minus |
3R | 32079331 | 3R | 26630368..26630533 | 405..570 | 245 | 76.5 | Plus |
3R | 32079331 | 3R | 26626194..26626256 | 583..521 | 210 | 88.9 | Minus |
3R | 32079331 | 3R | 26620828..26620903 | 582..507 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:42:36 has no hits.
BO13221.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:28 Download gff for
BO13221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 39..820 | 5..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:07 Download gff for
BO13221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 51..818 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:53 Download gff for
BO13221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 50..817 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:25 Download gff for
BO13221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlD-RA | 51..818 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:25 Download gff for
BO13221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26640155..26640907 | 32..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:07 Download gff for
BO13221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22465877..22466629 | 32..786 | 99 | | Plus |
BO13221.pep Sequence
Translation from 16 to 802
> BO13221.pep
MRAFIVLCLLAVSCSADKLGYNYQPVAHADEGLSFLPGSGQVIGELPSQV
LPVQSGEAVLSQPIEAPVAPQIAPLVEEFQKEFYSYAAPEEQYDEGASNQ
QIANSLKKNLRVVFIRTPENQGFERAALQLAKQSAQQETAIYVLTKQSDV
SNLAKQLNALKTSSTNKPEVHFVKYRTPEDAANAQLAIQNQYNQLPGVSR
ISNEGRAPVLNFASSPAQAAAIPAVAAAAPSSEYLPANVVAGQDYLPPNL
RRFRVKASFLDH
BO13221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlD-PA | 256 | CG14243-PA | 1..256 | 1..256 | 1282 | 100 | Plus |
TwdlK-PA | 247 | CG6460-PA | 1..247 | 1..255 | 594 | 50 | Plus |
TwdlJ-PB | 274 | CG5471-PB | 1..273 | 1..254 | 582 | 51.3 | Plus |
TwdlM-PA | 288 | CG5468-PA | 1..284 | 1..239 | 569 | 45.2 | Plus |
TwdlL-PA | 285 | CG6447-PA | 1..280 | 1..239 | 559 | 45.3 | Plus |