Clone Sequence Records
BO13223.3prime Sequence
725 bp (692 high quality bases) assembled on 2006-05-08
> BO13223.3prime
ATGGTCTAGAAAGCTTGCACTATCCGTTGCTCCTTTAAAGTTCCTGGCCA
CCAGGAAGTGCTCGGCGGAGTCTCCGCGGCTAGCGCGCGGTTTTACTCTC
TTCACTTTCTCATAAAACCTAAGCATATCTCGCTCCAGCTTGGGCACGTC
GCCATTATCCCACACCTTGACCACCAGATGGGCCTGCGGAGCAGACATGG
CCAGGGCAAAGCGCAGCACCTCGTAGCAGAGGTTAGTGATGCTCTCCTGG
TCCAGCATCCTCACTCCGGTGGCATTGGGTGCCATATCGGACAGCACGCA
GTTGACCTTTCTGTCTTGTAACGCTTCCCTCAGCCGCTTTTGTGCCAGCG
AAGAAGTGAAATCCATGCCGCCAAAGATTGTGGCACCCGGCACAGCATGG
AAATGCAACAGGTCGATGCTAAAGACGGCTCCCTGTGGCGCCCGCTCCTG
CTTTCCGTTGGCATTGGTCCGCTCCACGGCCACCTGGGTCCAGCTGCCAG
GAGCAGCTCCGCATTCCAAAACTGTGTCTCCGGGCCGCAGTATTCCGTAT
TTGTCGTCGATCTCCAGTAATTTGAAGGCACTCCGGCAGCGATAGTTCAT
CATGCGGGCCTTCTCCACGTACGGATCCGCCAGTTGGCGCGTAAGCCACT
CCTGGGAGCTCTTGCTCCGTCCTTTGAGGTTCCGCGGCTGCTGTTTGGCA
TACTTTCCGCCTATTTCCGTGTGCA
BO13223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11447-PA | 753 | CG11447-RA | 44..750 | 725..19 | 3535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11447-RA | 991 | CG11447-RA | 77..783 | 725..19 | 3535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19861686..19862392 | 725..19 | 3535 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 23:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3666..3727 | 533..472 | 112 | 64.5 | Minus |
BO13223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:19 Download gff for
BO13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-PA | 45..753 | 15..724 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:13 Download gff for
BO13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-PA | 45..753 | 15..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:04:38 Download gff for
BO13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 78..788 | 11..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:05:26 Download gff for
BO13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 78..788 | 11..724 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:05:26 Download gff for
BO13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19861687..19862397 | 11..724 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:04:38 Download gff for
BO13223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15687409..15688119 | 11..724 | 99 | | Minus |
BO13223.5prime Sequence
782 bp (683 high quality bases) assembled on 2006-05-08
> BO13223.5prime
GAAGTTATCAGTCGACATGCGTCTTGTTTTTACGGGTAATTGTGTTTTTA
AACGCCTGCTGCACACGGAAATAGGCGGAAAGTATGCCAAACAGCAGCCG
CGGAACCTCAAAGGACGGAGCAAGAGCTCCCAGGAGTGGCTTACGCGCCA
ACTGGCGGATCCGTACGTGGAGAAGGCCCGCATGATGAACTATCGCTGCC
GGAGTGCCTTCAAATTACTGGAGATCGACGACAAATACGGAATACTGCGG
CCCGGAGACACAGTTTTGGAATGCGGAGCTGCTCCTGGCAGCTGGACCCA
GGTGGCCGTGGAGCGGACCAATGCCAACGGAAAGCAGGAGCGGGCGCCAC
AGGGAGCCGTCTTTAGCATCGACCTGTTGCATTTCCATGCTGTGCCGGGT
GCCACAATCTTTGGCGGCATGGATTTCACTTCTTCGCTGGCACAAAAGCG
GCTGAGGGAAGCGTTACAAGACAGAAAGGTCAACTGCGTGCTGTCCGATA
TGGCACCCAATGCCACCGGAGTGAGGATGCTGGACCAGGAGAGCATCACT
AACCTCTGCTACGAGGTGCTGCGCTTTGCCCTGGCCATGTCTGCTCCGCA
GGCCCATCTGGTGGTCAAGGTGTGGGATAATGGCGACGTGCCCAAGCTGG
AGCGAGATATGCTTAGGTTTTATGAGAAAGTGAAGAGAGTAAAACCGCGC
GCTAGCCGCGGAGACTCCGCCGAGCACTTCCTGGTGGCCAGAAACTTTAA
AGGAGCAACGGATAGTGCAAGCTTTCTAGACC
BO13223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11447-PA | 753 | CG11447-RA | 1..750 | 17..766 | 3725 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11447-RA | 991 | CG11447-RA | 34..783 | 17..766 | 3735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19861643..19862392 | 17..766 | 3735 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 11:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3666..3727 | 252..313 | 112 | 64.5 | Plus |
BO13223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:20 Download gff for
BO13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:14 Download gff for
BO13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:16 Download gff for
BO13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 30..788 | 9..774 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:44 Download gff for
BO13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 30..788 | 9..774 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:44 Download gff for
BO13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19861639..19862397 | 9..774 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:16 Download gff for
BO13223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15687361..15688119 | 9..774 | 98 | | Plus |
BO13223.complete Sequence
784 bp assembled on 2007-10-17
GenBank Submission: FJ638715
> BO13223.complete
GAAGTTATCAGTCGACATGCGTCTTGTTTTTACGGGTAATTGTGTTTTTA
AACGCCTGCTGCACACGGAAATAGGCGGAAAGTATGCCAAACAGCAGCCG
CGGAACCTCAAAGGACGGAGCAAGAGCTCCCAGGAGTGGCTTACGCGCCA
ACTGGCGGATCCGTACGTGGAGAAGGCCCGCATGATGAACTATCGCTGCC
GGAGTGCCTTCAAATTACTGGAGATCGACGACAAATACGGAATACTGCGG
CCCGGAGACACAGTTTTGGAATGCGGAGCTGCTCCTGGCAGCTGGACCCA
GGTGGCCGTGGAGCGGACCAATGCCAACGGAAAGCAGGAGCGGGCGCCAC
AGGGAGCCGTCTTTAGCATCGACCTGTTGCATTTCCATGCTGTGCCGGGT
GCCACAATCTTTGGCGGCATGGATTTCACTTCTTCGCTGGCACAAAAGCG
GCTGAGGGAAGCGTTACAAGACAGAAAGGTCAACTGCGTGCTGTCCGATA
TGGCACCCAATGCCACCGGAGTGAGGATGCTGGACCAGGAGAGCATCACT
AACCTCTGCTACGAGGTGCTGCGCTTTGCCCTGGCCATGTCTGCTCCGCA
GGCCCATCTGGTGGTCAAGGTGTGGGATAATGGCGACGTGCCCAAGCTGG
AGCGAGATATGCTTAGGTTTTATGAGAAAGTGAAGAGAGTAAAACCGCGC
GCTAGCCGCGGAGACTCCGCCGAGCACTTCCTGGTGGCCAGGAACTTTAA
AGGAGCAACGGATAGTGCAAGCTTTCTAGACCAT
BO13223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11447-RA | 753 | CG11447-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11447-RA | 991 | CG11447-RA | 34..783 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19861643..19862392 | 17..766 | 3750 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3666..3727 | 252..313 | 112 | 64.5 | Plus |
BO13223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:45 Download gff for
BO13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:43 Download gff for
BO13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 25..783 | 9..774 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:01 Download gff for
BO13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 34..783 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:28 Download gff for
BO13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 29..778 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:41 Download gff for
BO13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11447-RA | 34..783 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:41 Download gff for
BO13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19861643..19862392 | 17..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:01 Download gff for
BO13223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15687365..15688114 | 17..768 | 99 | | Plus |
BO13223.pep Sequence
Translation from 16 to 784
> BO13223.pep
MRLVFTGNCVFKRLLHTEIGGKYAKQQPRNLKGRSKSSQEWLTRQLADPY
VEKARMMNYRCRSAFKLLEIDDKYGILRPGDTVLECGAAPGSWTQVAVER
TNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSSLAQKRLREAL
QDRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVV
KVWDNGDVPKLERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKGATDS
ASFLDH
BO13223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11447-PA | 250 | CG11447-PA | 1..250 | 1..250 | 1300 | 100 | Plus |
CG7009-PA | 320 | CG7009-PA | 10..205 | 48..244 | 201 | 28.4 | Plus |
CG5220-PA | 302 | CG5220-PA | 10..207 | 48..244 | 200 | 28.8 | Plus |
CG8939-PA | 817 | CG8939-PA | 13..200 | 48..244 | 200 | 29.9 | Plus |