Clone BO13223 Report

Search the DGRC for BO13223

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG11447-RA
Protein status:BO13223.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO13223.3prime Sequence

725 bp (692 high quality bases) assembled on 2006-05-08

> BO13223.3prime
ATGGTCTAGAAAGCTTGCACTATCCGTTGCTCCTTTAAAGTTCCTGGCCA
CCAGGAAGTGCTCGGCGGAGTCTCCGCGGCTAGCGCGCGGTTTTACTCTC
TTCACTTTCTCATAAAACCTAAGCATATCTCGCTCCAGCTTGGGCACGTC
GCCATTATCCCACACCTTGACCACCAGATGGGCCTGCGGAGCAGACATGG
CCAGGGCAAAGCGCAGCACCTCGTAGCAGAGGTTAGTGATGCTCTCCTGG
TCCAGCATCCTCACTCCGGTGGCATTGGGTGCCATATCGGACAGCACGCA
GTTGACCTTTCTGTCTTGTAACGCTTCCCTCAGCCGCTTTTGTGCCAGCG
AAGAAGTGAAATCCATGCCGCCAAAGATTGTGGCACCCGGCACAGCATGG
AAATGCAACAGGTCGATGCTAAAGACGGCTCCCTGTGGCGCCCGCTCCTG
CTTTCCGTTGGCATTGGTCCGCTCCACGGCCACCTGGGTCCAGCTGCCAG
GAGCAGCTCCGCATTCCAAAACTGTGTCTCCGGGCCGCAGTATTCCGTAT
TTGTCGTCGATCTCCAGTAATTTGAAGGCACTCCGGCAGCGATAGTTCAT
CATGCGGGCCTTCTCCACGTACGGATCCGCCAGTTGGCGCGTAAGCCACT
CCTGGGAGCTCTTGCTCCGTCCTTTGAGGTTCCGCGGCTGCTGTTTGGCA
TACTTTCCGCCTATTTCCGTGTGCA

BO13223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11447-PA 753 CG11447-RA 44..750 725..19 3535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11447-RA 991 CG11447-RA 77..783 725..19 3535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19861686..19862392 725..19 3535 100 Minus
Blast to na_te.dros performed 2015-02-10 23:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3666..3727 533..472 112 64.5 Minus

BO13223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:19 Download gff for BO13223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11447-PA 45..753 15..724 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:13 Download gff for BO13223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11447-PA 45..753 15..724 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:04:38 Download gff for BO13223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 78..788 11..724 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:05:26 Download gff for BO13223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 78..788 11..724 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:05:26 Download gff for BO13223.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19861687..19862397 11..724 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:04:38 Download gff for BO13223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15687409..15688119 11..724 99   Minus

BO13223.5prime Sequence

782 bp (683 high quality bases) assembled on 2006-05-08

> BO13223.5prime
GAAGTTATCAGTCGACATGCGTCTTGTTTTTACGGGTAATTGTGTTTTTA
AACGCCTGCTGCACACGGAAATAGGCGGAAAGTATGCCAAACAGCAGCCG
CGGAACCTCAAAGGACGGAGCAAGAGCTCCCAGGAGTGGCTTACGCGCCA
ACTGGCGGATCCGTACGTGGAGAAGGCCCGCATGATGAACTATCGCTGCC
GGAGTGCCTTCAAATTACTGGAGATCGACGACAAATACGGAATACTGCGG
CCCGGAGACACAGTTTTGGAATGCGGAGCTGCTCCTGGCAGCTGGACCCA
GGTGGCCGTGGAGCGGACCAATGCCAACGGAAAGCAGGAGCGGGCGCCAC
AGGGAGCCGTCTTTAGCATCGACCTGTTGCATTTCCATGCTGTGCCGGGT
GCCACAATCTTTGGCGGCATGGATTTCACTTCTTCGCTGGCACAAAAGCG
GCTGAGGGAAGCGTTACAAGACAGAAAGGTCAACTGCGTGCTGTCCGATA
TGGCACCCAATGCCACCGGAGTGAGGATGCTGGACCAGGAGAGCATCACT
AACCTCTGCTACGAGGTGCTGCGCTTTGCCCTGGCCATGTCTGCTCCGCA
GGCCCATCTGGTGGTCAAGGTGTGGGATAATGGCGACGTGCCCAAGCTGG
AGCGAGATATGCTTAGGTTTTATGAGAAAGTGAAGAGAGTAAAACCGCGC
GCTAGCCGCGGAGACTCCGCCGAGCACTTCCTGGTGGCCAGAAACTTTAA
AGGAGCAACGGATAGTGCAAGCTTTCTAGACC

BO13223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11447-PA 753 CG11447-RA 1..750 17..766 3725 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11447-RA 991 CG11447-RA 34..783 17..766 3735 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19861643..19862392 17..766 3735 99.9 Plus
Blast to na_te.dros performed 2015-02-12 11:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3666..3727 252..313 112 64.5 Plus

BO13223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:20 Download gff for BO13223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11447-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:14 Download gff for BO13223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11447-PA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:16 Download gff for BO13223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 30..788 9..774 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:44 Download gff for BO13223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 30..788 9..774 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:44 Download gff for BO13223.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19861639..19862397 9..774 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:16 Download gff for BO13223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15687361..15688119 9..774 98   Plus

BO13223.complete Sequence

784 bp assembled on 2007-10-17

GenBank Submission: FJ638715

> BO13223.complete
GAAGTTATCAGTCGACATGCGTCTTGTTTTTACGGGTAATTGTGTTTTTA
AACGCCTGCTGCACACGGAAATAGGCGGAAAGTATGCCAAACAGCAGCCG
CGGAACCTCAAAGGACGGAGCAAGAGCTCCCAGGAGTGGCTTACGCGCCA
ACTGGCGGATCCGTACGTGGAGAAGGCCCGCATGATGAACTATCGCTGCC
GGAGTGCCTTCAAATTACTGGAGATCGACGACAAATACGGAATACTGCGG
CCCGGAGACACAGTTTTGGAATGCGGAGCTGCTCCTGGCAGCTGGACCCA
GGTGGCCGTGGAGCGGACCAATGCCAACGGAAAGCAGGAGCGGGCGCCAC
AGGGAGCCGTCTTTAGCATCGACCTGTTGCATTTCCATGCTGTGCCGGGT
GCCACAATCTTTGGCGGCATGGATTTCACTTCTTCGCTGGCACAAAAGCG
GCTGAGGGAAGCGTTACAAGACAGAAAGGTCAACTGCGTGCTGTCCGATA
TGGCACCCAATGCCACCGGAGTGAGGATGCTGGACCAGGAGAGCATCACT
AACCTCTGCTACGAGGTGCTGCGCTTTGCCCTGGCCATGTCTGCTCCGCA
GGCCCATCTGGTGGTCAAGGTGTGGGATAATGGCGACGTGCCCAAGCTGG
AGCGAGATATGCTTAGGTTTTATGAGAAAGTGAAGAGAGTAAAACCGCGC
GCTAGCCGCGGAGACTCCGCCGAGCACTTCCTGGTGGCCAGGAACTTTAA
AGGAGCAACGGATAGTGCAAGCTTTCTAGACCAT

BO13223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11447-RA 753 CG11447-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11447-RA 991 CG11447-RA 34..783 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19861643..19862392 17..766 3750 100 Plus
Blast to na_te.dros performed 2014-11-27 14:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3666..3727 252..313 112 64.5 Plus

BO13223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:45 Download gff for BO13223.complete
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:43 Download gff for BO13223.complete
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 25..783 9..774 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:01 Download gff for BO13223.complete
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 34..783 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:28 Download gff for BO13223.complete
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 29..778 17..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:41 Download gff for BO13223.complete
Subject Subject Range Query Range Percent Splice Strand
CG11447-RA 34..783 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:41 Download gff for BO13223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19861643..19862392 17..768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:01 Download gff for BO13223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15687365..15688114 17..768 99   Plus

BO13223.pep Sequence

Translation from 16 to 784

> BO13223.pep
MRLVFTGNCVFKRLLHTEIGGKYAKQQPRNLKGRSKSSQEWLTRQLADPY
VEKARMMNYRCRSAFKLLEIDDKYGILRPGDTVLECGAAPGSWTQVAVER
TNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSSLAQKRLREAL
QDRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVV
KVWDNGDVPKLERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKGATDS
ASFLDH

BO13223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11447-PA 250 CG11447-PA 1..250 1..250 1300 100 Plus
CG7009-PA 320 CG7009-PA 10..205 48..244 201 28.4 Plus
CG5220-PA 302 CG5220-PA 10..207 48..244 200 28.8 Plus
CG8939-PA 817 CG8939-PA 13..200 48..244 200 29.9 Plus