Clone BO13224 Report

Search the DGRC for BO13224

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG2931-RA
Protein status:BO13224.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO13224.3prime Sequence

827 bp (721 high quality bases) assembled on 2006-05-08

> BO13224.3prime
ATGGTCTAGAAAGCTTGCAGTCATGGAATTGAAGGCCTGCAGAAGCACCT
GTTTTTCGCGCTCCTTTTTCTTAACTACGTCAAGACTGCGTTGTCGCCAC
GTGCTCTTGCGCAGTTTGATAGGCCGGCTGCCCACATAGCGGCCGTCCAT
CTCCTTCATGGCCCGTATAAAGTCGGCCGGTTCTCTGAAGCTCACGAAGC
CAAATCCCTTGCTCTTGCCCGTGCGCTTGTCCCGCACCACACGGGCCCGC
TGAAACGAGGGGAACTTGTTGAAGGTCCGGGTCAGGACCTCGTCGTTGAC
GTCGTTTCCCAAGTCACCACAAAAGATGCGGAAGTCATCGTCGGGCCAGT
CAGCCAGCGAAGTATCCTCCCACACGGTGCCGCCAGCGATACGCACCGTC
TTGCGGTCTTTCTTTTTCCGCTCTGTTGTCTGGAAGGATTGCAGCGCCGA
TGATGCGCGCGCTGCCTTAATGGCCTCCTCTGCAATGGGATTGGGTCCAG
ACTTTTCCGCCTTGAGCTTCTTCAGCTTCTGCGTTACGTCAAAAGAGACG
GCGTTGATGTCGATGGAGGGCGCGGCGGCCACGGTGGGCACGTGCACAGA
CTGCCGGCACTGATAAAGTTTGGGGGCGCTGCTCAGGACTACGGGAGTGG
CAGACATAGCCTTGGAAGAACCACCTCCACTGCCCGTAGGCACGAAGGTG
GACATAAACGTGGGTGGAGGCGGCATCGGGGGCGGGGGTACGGTCAGACG
CGATCCTCCATTGCCCTGGTGATGCTGCAGCTTGTGCTGCGAGTTTTGGT
ACGAATTGGCGGCTATGATCGGGCGCA

BO13224.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2931-PA 909 CG2931-RA 98..906 827..19 4020 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2931-RA 1114 CG2931-RA 192..1000 827..19 4030 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567616..5568424 19..827 4030 99.9 Plus
Blast to na_te.dros performed on 2015-02-06 12:20:35 has no hits.

BO13224.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:21 Download gff for BO13224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2931-PA 99..909 16..826 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:16 Download gff for BO13224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2931-PA 99..909 16..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:34 Download gff for BO13224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 193..1007 12..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:17 Download gff for BO13224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 193..1007 12..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:17 Download gff for BO13224.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5567609..5568423 12..826 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:34 Download gff for BO13224.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1393331..1394145 12..826 99   Plus

BO13224.5prime Sequence

783 bp (760 high quality bases) assembled on 2006-05-08

> BO13224.5prime
GAAGTTATCAGTCGACATGGGTACAAAGCGTCGCAACATCGAGGATGAGC
TCTCACGCTTCGAGGCGGAGATCTCGAAGCCCCCCGCCCGCAATCTCTTC
GTGCCCAACCAGGTGCGCCCGATCATAGCCGCCAATACGTACCAAAACTC
GCAGCACAAGCTGCAGCATCACCAGGGCAATGGAGGATCGCGTCTGACCG
TACCCCCGCCCCCGATGCCGCCTCCACCCACGTTTATGTCCACCTTCGTG
CCTACGGGCAGTGGAGGTGGTTCTTCCAAGGCTATGTCTGCCACTCCCGT
AGTCCTGAGCAGCGCCCCCAAACTTTATCAGTGCCGGCAGTCTGTGCACG
TGCCCACCGTGGCCGCCGCGCCCTCCATCGACATCAACGCCGTCTCTTTT
GACGTAACGCAGAAGCTGAAGAAGCTCAAGGCGGAAAAGTCTGGACCCAA
TCCCATTGCAGAGGAGGCCATTAAGGCAGCGCGCGCATCATCGGCGCTGC
AATCCTTCCAGACAACAGAGCGGAAAAAGAAAGACCGCAAGACGGTGCGT
ATCGCTGGCGGCACCGTGTGGGAGGATACTTCGCTGGCTGACTGGCCCGA
CGATGACTTCCGCATCTTTTGTGGTGACTTGGGAAACGACGTCAACGACG
AGGTCCTGACCCGGACCTTCAACAAGTTCCCCTCGTTTCAGCGGGCCCGT
GTGGTGCGGGACAAGCGCACGGGCAAGAGCAAGGGATTTGGCTTCGTGAG
CTTCAGAGAACCGGCCGACTTTATACGGGCCAT

BO13224.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2931-PA 909 CG2931-RA 1..767 17..783 3835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2931-RA 1114 CG2931-RA 95..861 17..783 3835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567755..5568521 783..17 3835 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:55:53 has no hits.

BO13224.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:22 Download gff for BO13224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2931-PA 1..767 17..783 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:17 Download gff for BO13224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2931-PA 1..767 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:18:48 Download gff for BO13224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 91..861 12..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:15 Download gff for BO13224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 91..861 12..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:15 Download gff for BO13224.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5567755..5568525 12..783 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:18:48 Download gff for BO13224.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1393477..1394247 12..783 99   Minus

BO13224.complete Sequence

940 bp assembled on 2006-10-11

GenBank Submission: FJ632725

> BO13224.complete
GAAGTTATCAGTCGACATGGGTACAAAGCGTCGCAACATCGAGGATGAGC
TCTCACGCTTCGAGGCGGAGATCTCGAAGCCCCCCGCCCGCAATCTCTTC
GTGCCCAACCAGGTGCGCCCGATCATAGCCGCCAATACGTACCAAAACTC
GCAGCACAAGCTGCAGCATCACCAGGGCAATGGAGGATCGCGTCTGACCG
TACCCCCGCCCCCGATGCCGCCTCCACCCACGTTTATGTCCACCTTCGTG
CCTACGGGCAGTGGAGGTGGTTCTTCCAAGGCTATGTCTGCCACTCCCGT
AGTCCTGAGCAGCGCCCCCAAACTTTATCAGTGCCGGCAGTCTGTGCACG
TGCCCACCGTGGCCGCCGCGCCCTCCATCGACATCAACGCCGTCTCTTTT
GACGTAACGCAGAAGCTGAAGAAGCTCAAGGCGGAAAAGTCTGGACCCAA
TCCCATTGCAGAGGAGGCCATTAAGGCAGCGCGCGCATCATCGGCGCTGC
AATCCTTCCAGACAACAGAGCGGAAAAAGAAAGACCGCAAGACGGTGCGT
ATCGCTGGCGGCACCGTGTGGGAGGATACTTCGCTGGCTGACTGGCCCGA
CGATGACTTCCGCATCTTTTGTGGTGACTTGGGAAACGACGTCAACGACG
AGGTCCTGACCCGGACCTTCAACAAGTTCCCCTCGTTTCAGCGGGCCCGT
GTGGTGCGGGACAAGCGCACGGGCAAGAGCAAGGGATTTGGCTTCGTGAG
CTTCAGAGAACCGGCCGACTTTATACGGGCCATGAAGGAGATGGACGGCC
GCTATGTGGGCAGCCGGCCTATCAAACTGCGCAAGAGCACGTGGCGACAA
CGCAGTCTTGACGTAGTTAAGAAAAAGGAGCGCGAAAAACAGGTGCTTCT
GCAGGCCTTCAATTCCATGACTGCAAGCTTTCTAGACCAT

BO13224.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2931-RA 909 CG2931-PA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2931-RA 1114 CG2931-RA 95..1000 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5567616..5568521 922..17 4530 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:08:31 has no hits.

BO13224.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:23 Download gff for BO13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:09 Download gff for BO13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 86..1002 12..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:10 Download gff for BO13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 95..1000 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:23 Download gff for BO13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 86..1002 12..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:37 Download gff for BO13224.complete
Subject Subject Range Query Range Percent Splice Strand
CG2931-RA 95..1000 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:37 Download gff for BO13224.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5567613..5568521 17..924 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:10 Download gff for BO13224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1393335..1394243 17..924 99   Minus

BO13224.pep Sequence

Translation from 16 to 940

> BO13224.pep
MGTKRRNIEDELSRFEAEISKPPARNLFVPNQVRPIIAANTYQNSQHKLQ
HHQGNGGSRLTVPPPPMPPPPTFMSTFVPTGSGGGSSKAMSATPVVLSSA
PKLYQCRQSVHVPTVAAAPSIDINAVSFDVTQKLKKLKAEKSGPNPIAEE
AIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRI
FCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPA
DFIRAMKEMDGRYVGSRPIKLRKSTWRQRSLDVVKKKEREKQVLLQAFNS
MTASFLDH

BO13224.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2931-PA 302 CG2931-PA 1..302 1..302 1562 100 Plus
CG34362-PI 651 CG34362-PI 176..389 61..275 168 26.3 Plus
CG34362-PF 498 CG34362-PF 164..243 196..275 157 40 Plus
CG34362-PA 505 CG34362-PA 164..243 196..275 157 40 Plus
CG34362-PJ 508 CG34362-PJ 164..243 196..275 157 40 Plus