Clone Sequence Records
BO13224.3prime Sequence
827 bp (721 high quality bases) assembled on 2006-05-08
> BO13224.3prime
ATGGTCTAGAAAGCTTGCAGTCATGGAATTGAAGGCCTGCAGAAGCACCT
GTTTTTCGCGCTCCTTTTTCTTAACTACGTCAAGACTGCGTTGTCGCCAC
GTGCTCTTGCGCAGTTTGATAGGCCGGCTGCCCACATAGCGGCCGTCCAT
CTCCTTCATGGCCCGTATAAAGTCGGCCGGTTCTCTGAAGCTCACGAAGC
CAAATCCCTTGCTCTTGCCCGTGCGCTTGTCCCGCACCACACGGGCCCGC
TGAAACGAGGGGAACTTGTTGAAGGTCCGGGTCAGGACCTCGTCGTTGAC
GTCGTTTCCCAAGTCACCACAAAAGATGCGGAAGTCATCGTCGGGCCAGT
CAGCCAGCGAAGTATCCTCCCACACGGTGCCGCCAGCGATACGCACCGTC
TTGCGGTCTTTCTTTTTCCGCTCTGTTGTCTGGAAGGATTGCAGCGCCGA
TGATGCGCGCGCTGCCTTAATGGCCTCCTCTGCAATGGGATTGGGTCCAG
ACTTTTCCGCCTTGAGCTTCTTCAGCTTCTGCGTTACGTCAAAAGAGACG
GCGTTGATGTCGATGGAGGGCGCGGCGGCCACGGTGGGCACGTGCACAGA
CTGCCGGCACTGATAAAGTTTGGGGGCGCTGCTCAGGACTACGGGAGTGG
CAGACATAGCCTTGGAAGAACCACCTCCACTGCCCGTAGGCACGAAGGTG
GACATAAACGTGGGTGGAGGCGGCATCGGGGGCGGGGGTACGGTCAGACG
CGATCCTCCATTGCCCTGGTGATGCTGCAGCTTGTGCTGCGAGTTTTGGT
ACGAATTGGCGGCTATGATCGGGCGCA
BO13224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2931-PA | 909 | CG2931-RA | 98..906 | 827..19 | 4020 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2931-RA | 1114 | CG2931-RA | 192..1000 | 827..19 | 4030 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5567616..5568424 | 19..827 | 4030 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:20:35 has no hits.
BO13224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:21 Download gff for
BO13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-PA | 99..909 | 16..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:16 Download gff for
BO13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-PA | 99..909 | 16..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:34 Download gff for
BO13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 193..1007 | 12..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:17 Download gff for
BO13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 193..1007 | 12..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:17 Download gff for
BO13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5567609..5568423 | 12..826 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:34 Download gff for
BO13224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1393331..1394145 | 12..826 | 99 | | Plus |
BO13224.5prime Sequence
783 bp (760 high quality bases) assembled on 2006-05-08
> BO13224.5prime
GAAGTTATCAGTCGACATGGGTACAAAGCGTCGCAACATCGAGGATGAGC
TCTCACGCTTCGAGGCGGAGATCTCGAAGCCCCCCGCCCGCAATCTCTTC
GTGCCCAACCAGGTGCGCCCGATCATAGCCGCCAATACGTACCAAAACTC
GCAGCACAAGCTGCAGCATCACCAGGGCAATGGAGGATCGCGTCTGACCG
TACCCCCGCCCCCGATGCCGCCTCCACCCACGTTTATGTCCACCTTCGTG
CCTACGGGCAGTGGAGGTGGTTCTTCCAAGGCTATGTCTGCCACTCCCGT
AGTCCTGAGCAGCGCCCCCAAACTTTATCAGTGCCGGCAGTCTGTGCACG
TGCCCACCGTGGCCGCCGCGCCCTCCATCGACATCAACGCCGTCTCTTTT
GACGTAACGCAGAAGCTGAAGAAGCTCAAGGCGGAAAAGTCTGGACCCAA
TCCCATTGCAGAGGAGGCCATTAAGGCAGCGCGCGCATCATCGGCGCTGC
AATCCTTCCAGACAACAGAGCGGAAAAAGAAAGACCGCAAGACGGTGCGT
ATCGCTGGCGGCACCGTGTGGGAGGATACTTCGCTGGCTGACTGGCCCGA
CGATGACTTCCGCATCTTTTGTGGTGACTTGGGAAACGACGTCAACGACG
AGGTCCTGACCCGGACCTTCAACAAGTTCCCCTCGTTTCAGCGGGCCCGT
GTGGTGCGGGACAAGCGCACGGGCAAGAGCAAGGGATTTGGCTTCGTGAG
CTTCAGAGAACCGGCCGACTTTATACGGGCCAT
BO13224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2931-PA | 909 | CG2931-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2931-RA | 1114 | CG2931-RA | 95..861 | 17..783 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5567755..5568521 | 783..17 | 3835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:55:53 has no hits.
BO13224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:22 Download gff for
BO13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:17 Download gff for
BO13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:18:48 Download gff for
BO13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 91..861 | 12..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:15 Download gff for
BO13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 91..861 | 12..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:15 Download gff for
BO13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5567755..5568525 | 12..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:18:48 Download gff for
BO13224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1393477..1394247 | 12..783 | 99 | | Minus |
BO13224.complete Sequence
940 bp assembled on 2006-10-11
GenBank Submission: FJ632725
> BO13224.complete
GAAGTTATCAGTCGACATGGGTACAAAGCGTCGCAACATCGAGGATGAGC
TCTCACGCTTCGAGGCGGAGATCTCGAAGCCCCCCGCCCGCAATCTCTTC
GTGCCCAACCAGGTGCGCCCGATCATAGCCGCCAATACGTACCAAAACTC
GCAGCACAAGCTGCAGCATCACCAGGGCAATGGAGGATCGCGTCTGACCG
TACCCCCGCCCCCGATGCCGCCTCCACCCACGTTTATGTCCACCTTCGTG
CCTACGGGCAGTGGAGGTGGTTCTTCCAAGGCTATGTCTGCCACTCCCGT
AGTCCTGAGCAGCGCCCCCAAACTTTATCAGTGCCGGCAGTCTGTGCACG
TGCCCACCGTGGCCGCCGCGCCCTCCATCGACATCAACGCCGTCTCTTTT
GACGTAACGCAGAAGCTGAAGAAGCTCAAGGCGGAAAAGTCTGGACCCAA
TCCCATTGCAGAGGAGGCCATTAAGGCAGCGCGCGCATCATCGGCGCTGC
AATCCTTCCAGACAACAGAGCGGAAAAAGAAAGACCGCAAGACGGTGCGT
ATCGCTGGCGGCACCGTGTGGGAGGATACTTCGCTGGCTGACTGGCCCGA
CGATGACTTCCGCATCTTTTGTGGTGACTTGGGAAACGACGTCAACGACG
AGGTCCTGACCCGGACCTTCAACAAGTTCCCCTCGTTTCAGCGGGCCCGT
GTGGTGCGGGACAAGCGCACGGGCAAGAGCAAGGGATTTGGCTTCGTGAG
CTTCAGAGAACCGGCCGACTTTATACGGGCCATGAAGGAGATGGACGGCC
GCTATGTGGGCAGCCGGCCTATCAAACTGCGCAAGAGCACGTGGCGACAA
CGCAGTCTTGACGTAGTTAAGAAAAAGGAGCGCGAAAAACAGGTGCTTCT
GCAGGCCTTCAATTCCATGACTGCAAGCTTTCTAGACCAT
BO13224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2931-RA | 909 | CG2931-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2931-RA | 1114 | CG2931-RA | 95..1000 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5567616..5568521 | 922..17 | 4530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:08:31 has no hits.
BO13224.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:23 Download gff for
BO13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:09 Download gff for
BO13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 86..1002 | 12..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:10 Download gff for
BO13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 95..1000 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:23 Download gff for
BO13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 86..1002 | 12..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:37 Download gff for
BO13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2931-RA | 95..1000 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:37 Download gff for
BO13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5567613..5568521 | 17..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:10 Download gff for
BO13224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1393335..1394243 | 17..924 | 99 | | Minus |
BO13224.pep Sequence
Translation from 16 to 940
> BO13224.pep
MGTKRRNIEDELSRFEAEISKPPARNLFVPNQVRPIIAANTYQNSQHKLQ
HHQGNGGSRLTVPPPPMPPPPTFMSTFVPTGSGGGSSKAMSATPVVLSSA
PKLYQCRQSVHVPTVAAAPSIDINAVSFDVTQKLKKLKAEKSGPNPIAEE
AIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRI
FCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPA
DFIRAMKEMDGRYVGSRPIKLRKSTWRQRSLDVVKKKEREKQVLLQAFNS
MTASFLDH
BO13224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2931-PA | 302 | CG2931-PA | 1..302 | 1..302 | 1562 | 100 | Plus |
CG34362-PI | 651 | CG34362-PI | 176..389 | 61..275 | 168 | 26.3 | Plus |
CG34362-PF | 498 | CG34362-PF | 164..243 | 196..275 | 157 | 40 | Plus |
CG34362-PA | 505 | CG34362-PA | 164..243 | 196..275 | 157 | 40 | Plus |
CG34362-PJ | 508 | CG34362-PJ | 164..243 | 196..275 | 157 | 40 | Plus |