Clone Sequence Records
BO13226.3prime Sequence
419 bp (418 high quality bases) assembled on 2006-05-08
> BO13226.3prime
ATGGTCTAGAAAGCTTGCAGCCTGCTTCTCGGCCTCGATCACCTCCTTGG
TGGGCAGCACGTTCTTCTCATTGGTCTCGGTGTGCTTCAACTTTTTCGCA
TCAAAGTTCTCGATGCCGGCGATGAACTGATTCTTCTCCTTCTCCTGCTC
GATGGCTTCCTTATCGGGCAACGGGTTCTTCTCGTTGGTCTCCGTGTGCT
TCAAGTTGTTCTGATTGAAAGCGGTGATGCCCTCGAAGATCGACTGTTGG
GTCTTCTCGGCAGCCACATCTTCGGCGGTGGGAAGAATGATCTTCTCCTG
GGTGCTAGCGTTCTTCAGTTTGTCCTGGTTGAATCCCTCCAACTGGCTTT
TCAGGTTCTCGGCCACCTTGGGCAGATCCTTGAGTGCTGGTGCTGGGGCG
GCCATGTCGACTGATAACT
BO13226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4944-PA | 390 | cib-RA | 1..387 | 405..19 | 1935 | 100 | Minus |
CG4944-PB | 390 | cib-RB | 1..387 | 405..19 | 1935 | 100 | Minus |
CG4944-PC | 294 | cib-RC | 1..250 | 405..156 | 1250 | 100 | Minus |
CG4944-PC | 294 | cib-RC | 249..294 | 146..101 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RE | 911 | CG4944-RE | 177..563 | 405..19 | 1935 | 100 | Minus |
cib-RD | 1502 | CG4944-RD | 423..809 | 405..19 | 1935 | 100 | Minus |
cib-RB | 1173 | CG4944-RB | 94..480 | 405..19 | 1935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4110150..4110288 | 157..19 | 695 | 100 | Minus |
X | 23542271 | X | 4109689..4109824 | 405..270 | 680 | 100 | Minus |
X | 23542271 | X | 4109895..4110010 | 271..156 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:54:35 has no hits.
BO13226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:23 Download gff for
BO13226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-PB | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:19 Download gff for
BO13226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4944-PB | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:45 Download gff for
BO13226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..483 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:20 Download gff for
BO13226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..483 | 15..405 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:20 Download gff for
BO13226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4109685..4109824 | 270..410 | 98 | -> | Minus |
X | 4109897..4110010 | 156..269 | 100 | -> | Minus |
X | 4110152..4110286 | 21..155 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:45 Download gff for
BO13226.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4003930..4004043 | 156..269 | 100 | -> | Minus |
arm_X | 4003718..4003857 | 270..410 | 98 | -> | Minus |
arm_X | 4004185..4004319 | 21..155 | 100 | -> | Minus |
BO13226.5prime Sequence
419 bp (418 high quality bases) assembled on 2006-05-08
> BO13226.5prime
GAAGTTATCACTCGACATGGCCGCCCCAGCACCAGCACTCAAGGATCTGC
CCAAGGTGGCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGAC
AAACTGAAGAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGA
AGATGTGGCTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCG
CTTTCAATCAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCG
TTGCCCGATAAGGAAGCCATCGAGCAGGAGAAGGAGAAGAATCAGTTCAT
CGCCGGCATCGAGAACTTTGATGCGAAAAAGTTGAAGCACACCGAGACCA
ATGAGAAGAACGTGCTGCCCACCAAGGAGGTGATCGAGGCCGAGAAGCAG
GCTGCAAGCTTTCTAGACC
BO13226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4944-PA | 390 | cib-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
CG4944-PB | 390 | cib-RB | 1..387 | 17..403 | 1935 | 100 | Plus |
CG4944-PC | 294 | cib-RC | 1..250 | 17..266 | 1250 | 100 | Plus |
CG4944-PC | 294 | cib-RC | 249..294 | 276..321 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RE | 911 | CG4944-RE | 177..563 | 17..403 | 1935 | 100 | Plus |
cib-RD | 1502 | CG4944-RD | 423..809 | 17..403 | 1935 | 100 | Plus |
cib-RB | 1173 | CG4944-RB | 94..480 | 17..403 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4110150..4110288 | 265..403 | 695 | 100 | Plus |
X | 23542271 | X | 4109689..4109824 | 17..152 | 680 | 100 | Plus |
X | 23542271 | X | 4109895..4110010 | 151..266 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:30:43 has no hits.
BO13226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:24 Download gff for
BO13226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-PB | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:21 Download gff for
BO13226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4944-PB | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:11 Download gff for
BO13226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 86..483 | 10..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:18:07 Download gff for
BO13226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 86..483 | 10..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:18:07 Download gff for
BO13226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4109897..4110010 | 153..266 | 100 | -> | Plus |
X | 4110152..4110286 | 267..401 | 100 | -> | Plus |
X | 4109685..4109824 | 12..152 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:11 Download gff for
BO13226.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4003718..4003857 | 12..152 | 98 | -> | Plus |
arm_X | 4003930..4004043 | 153..266 | 100 | -> | Plus |
arm_X | 4004185..4004319 | 267..401 | 100 | -> | Plus |
BO13226.complete Sequence
421 bp assembled on 2006-10-11
GenBank Submission: FJ632726
> BO13226.complete
GAAGTTATCAGTCGACATGGCCGCCCCAGCACCAGCACTCAAGGATCTGC
CCAAGGTGGCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGAC
AAACTGAAGAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGA
AGATGTGGCTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCG
CTTTCAATCAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCG
TTGCCCGATAAGGAAGCCATCGAGCAGGAGAAGGAGAAGAATCAGTTCAT
CGCCGGCATCGAGAACTTTGATGCGAAAAAGTTGAAGCACACCGAGACCA
ATGAGAAGAACGTGCTGCCCACCAAGGAGGTGATCGAGGCCGAGAAGCAG
GCTGCAAGCTTTCTAGACCAT
BO13226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RE | 390 | CG4944-PE | 1..387 | 17..403 | 1935 | 100 | Plus |
cib-RD | 390 | CG4944-PD | 1..387 | 17..403 | 1935 | 100 | Plus |
cib-RB | 390 | CG4944-PB | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RE | 911 | CG4944-RE | 177..563 | 17..403 | 1935 | 100 | Plus |
cib-RD | 1502 | CG4944-RD | 423..809 | 17..403 | 1935 | 100 | Plus |
cib-RB | 1173 | CG4944-RB | 94..480 | 17..403 | 1935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4110150..4110288 | 265..403 | 695 | 100 | Plus |
X | 23542271 | X | 4109689..4109824 | 17..152 | 680 | 100 | Plus |
X | 23542271 | X | 4109895..4110010 | 151..266 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:03 has no hits.
BO13226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:24 Download gff for
BO13226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:14 Download gff for
BO13226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..483 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:46 Download gff for
BO13226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..480 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:24 Download gff for
BO13226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..483 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:47 Download gff for
BO13226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RB | 94..480 | 17..405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:47 Download gff for
BO13226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4109897..4110010 | 153..266 | 100 | -> | Plus |
X | 4110152..4110288 | 267..405 | 98 | | Plus |
X | 4109689..4109824 | 17..152 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:46 Download gff for
BO13226.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4003722..4003857 | 17..152 | 100 | -> | Plus |
arm_X | 4003930..4004043 | 153..266 | 100 | -> | Plus |
arm_X | 4004185..4004321 | 267..405 | 98 | | Plus |
BO13226.pep Sequence
Translation from 16 to 421
> BO13226.pep
MAAPAPALKDLPKVAENLKSQLEGFNQDKLKNASTQEKIILPTAEDVAAE
KTQQSIFEGITAFNQNNLKHTETNEKNPLPDKEAIEQEKEKNQFIAGIEN
FDAKKLKHTETNEKNVLPTKEVIEAEKQAASFLDH
BO13226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-PE | 129 | CG4944-PE | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PD | 129 | CG4944-PD | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PB | 129 | CG4944-PB | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PA | 129 | CG4944-PA | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PC | 97 | CG4944-PC | 1..88 | 1..88 | 422 | 95.5 | Plus |