Clone Sequence Records
BO13228.3prime Sequence
704 bp (636 high quality bases) assembled on 2006-05-08
> BO13228.3prime
ATGGTCTAGAAAGCTTGCCTCGAAGTAGCGCTTCTTGAGGTCCGGTGGAT
AGGTCACGTAGATGTAGTGCTCGTTCTGACCCAGACCCGCCTCCTGCTGC
ACAATCTCGTGCGTGGAGGCAGAGGCACGAAGGGATTGCTGCGAGGAACC
CACATGGCGATGCCTCGTTTCCAGCGGCCGCGGATGCGTGTTGTAGTGAC
GCTGTGTATCGCCAGGAGCTCCAGCGCCTTGTCCCGATCCTGATCCAGCC
ACTATGTTGGTGGCAATCTGGCGAGAGGAGCTACTTGTATAGTCGCGTCG
GTCTAAAATGTCCTGTGGGTAGGCCAGGCTCGTCGAGTGACGATGTTGCA
GGTGGGGATGCTGTCCCGAATGCTGCACCCGATGGTGCAACGGCGTGTTG
GCGTTGGAGGAGCTGCTGCGAACGGCCCCTTGGGTGGGCGTGCCCACTGT
TGGCCCCACCGGACGCTGATCGGCGATGTAGTGCCGCGGACTGTGGCGAT
GATACTGAACCTGCTCCGGGTACAAGTCCCGAACGGATGCTGCCTGCTGC
TGCTGTTGCTGCTGCTGTTGGTAATAGTACTGCTGCTCCTGAAGCAGGTG
CTGCTGTTGCTGCTGCTGACCAGCTATCCCGCCGGCGTCCAGGGTCCGAG
GTCGTGCCGCGTGGCATAGTCCACATGGTAGTGATGACCCGCTGCTGCTC
CTGG
BO13228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4133-PA | 2004 | CG4133-RA | 1377..2001 | 643..19 | 3125 | 100 | Minus |
CG4133-PA | 2004 | CG4133-RA | 1318..1375 | 704..647 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4133-RC | 2642 | CG4133-RC | 1601..2284 | 704..19 | 3380 | 99.7 | Minus |
CG4133-RB | 2554 | CG4133-RB | 1513..2196 | 704..19 | 3380 | 99.7 | Minus |
CG4133-RA | 2629 | CG4133-RA | 1588..2271 | 704..19 | 3380 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 457704..458387 | 704..19 | 3350 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:53:44 has no hits.
BO13228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:25 Download gff for
BO13228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-PA | 1318..2004 | 16..704 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:22 Download gff for
BO13228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-PA | 1318..2004 | 16..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:57 Download gff for
BO13228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-RA | 1588..2277 | 13..704 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:15 Download gff for
BO13228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-RA | 1588..2277 | 13..704 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:15 Download gff for
BO13228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 457704..458393 | 13..704 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:57 Download gff for
BO13228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 457704..458393 | 13..704 | 99 | | Minus |
BO13228.5prime Sequence
791 bp (719 high quality bases) assembled on 2006-05-08
> BO13228.5prime
GAAGTTATCAGTCGACATGTCGCCTAAATATCATAATTTCGAGATTGCAC
TGGTCTACTTTCTGCTGCTAATACCATGGCCACCCACGAATGTGATCAGA
ATCCTCTGCTCGCGAGATAACAGCCGACTGGTGCGCAAAATAGTGCGCTC
CAAATGGACTCCCATTCTGGACAAGCATCAGGTGAAGCTGCCGCTGGAGT
GCCCGCTCCATCCGTTCCGGGATGTCTTTGCCCCCCGCCAGGATGCCAAG
CAGAGGGATCGACCTACTCAGTGGACGTGCAGGAAATGTGGCAAGAGCTT
CTACCAGGAGAAGCATCTGGACTTACATTTCGACACACGCCACAAGAGCA
TCATCAATGAGGCGGAGGATGCCGTTTGCCTGGCCGACTTCTGCGACATT
ATGCGGTGTGAGGTATTTGAAACGGAGGACGCATCTAGCCTGAAGTTTGG
TGACCAGCACATTGTCACGGACATCGAGGTCTGGGGCGACTCCCTGGGCC
AGAACTCCGCGTTGGCCAAAGCGAATGCTGCCTACTTGAGCTTAATACCT
AGAACTTCCACATTGGGTGCCTCGCGTGCCGCCAAAGTACAAAATCGTCA
ATTACTTCAAGACAAGCCAAGCCAGGCCAGCAAGCAGAATCAGTCACCGG
CAGGTGAGCGAACACATCCCCAATCCCACCACCATCCCCGAGATCGTGCA
TCCACCACAGCCAATCCCCTTCGCCTAGATCCATCGCCGGAGGACGGGTC
GGCGGCTAGGCCCAGGTCGGCGGGCGAAAAGCTGCTTAACA
BO13228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4133-PA | 2004 | CG4133-RA | 1..775 | 17..791 | 3850 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4133-RC | 2642 | CG4133-RC | 271..1045 | 17..791 | 3860 | 99.9 | Plus |
CG4133-RA | 2629 | CG4133-RA | 271..1045 | 17..791 | 3860 | 99.9 | Plus |
CG4133-RB | 2554 | CG4133-RB | 271..907 | 17..653 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 456793..457035 | 549..791 | 1200 | 99.6 | Plus |
2L | 23513712 | 2L | 456537..456729 | 360..552 | 965 | 100 | Plus |
2L | 23513712 | 2L | 456287..456469 | 180..362 | 915 | 100 | Plus |
2L | 23513712 | 2L | 456084..456225 | 42..183 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:55:49 has no hits.
BO13228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:26 Download gff for
BO13228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:23 Download gff for
BO13228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-PA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:18:47 Download gff for
BO13228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-RA | 262..1044 | 7..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:06 Download gff for
BO13228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-RA | 262..1044 | 7..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:06 Download gff for
BO13228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 456086..456223 | 44..181 | 100 | -> | Plus |
2L | 456289..456468 | 182..361 | 100 | -> | Plus |
2L | 456539..456729 | 362..552 | 100 | -> | Plus |
2L | 456797..457034 | 553..790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:18:47 Download gff for
BO13228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 456086..456223 | 44..181 | 100 | -> | Plus |
arm_2L | 456289..456468 | 182..361 | 100 | -> | Plus |
arm_2L | 456539..456729 | 362..552 | 100 | -> | Plus |
arm_2L | 456797..457034 | 553..790 | 99 | | Plus |
BO13228.complete Sequence
2035 bp assembled on 2008-08-14
GenBank Submission: FJ632727
> BO13228.complete
GAAGTTATCAGTCGACATGTCGCCTAAATATCATAATTTCGAGATTGCAC
TGGTCTACTTTCTGCTGCTAATACCATGGCCACCCACGAATGTGATCAGA
ATCCTCTGCTCGCGAGATAACAGCCGACTGGTGCGCAAAATAGTGCGCTC
CAAATGGACTCCCATTCTGGACAAGCATCAGGTGAAGCTGCCGCTGGAGT
GCCCGCTCCATCCGTTCCGGGATGTCTTTGCCCCCCGCCAGGATGCCAAG
CAGAGGGATCGACCTACTCAGTGGACGTGCAGGAAATGTGGCAAGAGCTT
CTACCAGGAGAAGCATCTGGACTTACATTTCGACACACGCCACAAGAGCA
TCATCAATGAGGCGGAGGATGCCGTTTGCCTGGCCGACTTCTGCGACATT
ATGCGGTGTGAGGTATTTGAAACGGAGGACGCATCTAGCCTGAAGTTTGG
TGACCAGCACATTGTCACGGACATCGAGGTCTGGGGCGACTCCCTGGGCC
AGAACTCCGCGTTGGCCAAAGCGAATGCTGCCTACTTGAGCTTAATACCT
AGAACTTCCACATTGGGTGCCTCGCGTGCCGCCAAAGTACAAAATCGTCA
ATTACTTCAAGACAAGCCAAGCCAGGCCAGCAAGCAGAATCAGTCACCGG
CAGGTGAGCGAACACATCCCCAATCCCACCACCATCCCCGAGATCGTGCA
TCCACCACAGCCAATCCCCTTCGCCTAGATCCATCGCCGGAGGACGGGTC
GGCGGCTAGGCCCAGGTCGGCGGGCGAGAAGCTGCTTAACAAGCTTAAGG
AGCTGGGGAAGGCGCACCTAAAGCCGGCAGCGGATCCGGAGGCCAGCAGG
CAGAACGAGACCGGCGAGGAGGAGGACGAAAAGGGGAGTGGACAACCTGA
GGGCAGTGGCCAGTCCGCTGATGAGGTCAAAACGGAGGAGGGATCGGGGG
CTAATGGAAACGGAAACAAGGCCAGAGCCAATTGCAAGCCGGAGGAGTTG
AGTAAGCTGAAGAACCGCTGCGAGATCCTGCTAAGGAGCTGCATCGGGGG
ATTGCTGCTGTCCATGTCGGATCAGGCCTTCAAGGAGATGGAAGATGAAA
TGAACAAGGCGGTGTGCTGGTACTTGACTTGCGATCGATACTGGGAGGAT
GGTCCCTTGGAGCCCCGAGCCTTTCCCTGGGGTCTAATCGTGATCCTGAT
CTTCGTACTCTCCACTGGGATCTGCTTCTGCTACTACATTATCTGGATCC
TGTTCGACTCCGAAGAAACGACAATCAACGCGAACCACTACTACGGCCAG
GGATCCATCGGCGCCGGCGGGAGCATCTACATGCCAGGAGCAGCAGCGGG
TCATCACTACCATGTGGACTATGCCACGCGGCACGACCTCGACCTGGACG
CCGGCGGGATAGCTGGTCAGCAGCAGCAACAGCAGCACCTGCTTCAGGAG
CAGCAGTACTATTACCAACAGCAGCAGCAACAGCAGCAGCAGGCAGCATC
CGTTCGGGACTTGTACCCGGAGCAGGTTCAGTATCATCGCCACAGTCCGC
GGCACTACATCGCCGATCAGCGTCCGGTGGGGCCAACAGTGGGCACGCCC
ACCCAAGGGGCCGTTCGCAGCAGCTCCTCCAACGCCAACACGCCGTTGCA
CCATCGGGTGCAGCATTCGGGACAGCATCCCCACCTGCAACATCGTCACT
CGACGAGCCTGGCCTACCCACAGGACATTTTAGACCGACGCGACTATACA
AGTAGCTCCTCTCGCCAGATTGCCACCAACATAGTGGCTGGATCAGGATC
GGGACAAGGCGCTGGAGCTCCTGGCGATACACAGCGTCACTACAACACGC
ATCCGCGGCCGCTGGAAACGAGGCATCGCCATGTGGGTTCCTCGCAGCAA
TCCCTTCGTGCCTCTGCCTCCACGCACGAGATTGTGCAGCAGGAGGCGGG
TCTGGGTCAGAACGAGCACTACATCTACGTGACCTATCCACCGGACCTCA
AGAAGCGCTACTTCGAGGCAAGCTTTCTAGACCAT
BO13228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4133-RA | 2004 | CG4133-PA | 1..2001 | 17..2017 | 10005 | 100 | Plus |
CG4133-RC | 1752 | CG4133-PC | 1..1752 | 17..1755 | 8530 | 99.3 | Plus |
CG4133-RB | 1929 | CG4133-PB | 636..1926 | 727..2017 | 6455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4133-RA | 2629 | CG4133-RA | 271..2271 | 17..2017 | 10005 | 100 | Plus |
CG4133-RC | 2642 | CG4133-RC | 271..2284 | 17..2017 | 9840 | 99.4 | Plus |
CG4133-RB | 2554 | CG4133-RB | 906..2196 | 727..2017 | 6455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 457628..458387 | 1258..2017 | 3800 | 100 | Plus |
2L | 23513712 | 2L | 456793..457338 | 549..1094 | 2730 | 100 | Plus |
2L | 23513712 | 2L | 456537..456729 | 360..552 | 965 | 100 | Plus |
2L | 23513712 | 2L | 456287..456469 | 180..362 | 915 | 100 | Plus |
2L | 23513712 | 2L | 457398..457562 | 1093..1257 | 825 | 100 | Plus |
2L | 23513712 | 2L | 456084..456225 | 42..183 | 710 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1310..1360 | 1069..1019 | 120 | 70.6 | Minus |
BO13228.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:31 Download gff for
BO13228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-RA | 250..2265 | 7..2023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:34 Download gff for
BO13228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-RA | 271..2271 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:22 Download gff for
BO13228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-RA | 259..2259 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:23 Download gff for
BO13228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4133-RA | 271..2271 | 17..2019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:23 Download gff for
BO13228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 456086..456223 | 44..181 | 100 | -> | Plus |
2L | 456289..456468 | 182..361 | 100 | -> | Plus |
2L | 456539..456729 | 362..552 | 100 | -> | Plus |
2L | 455801..455827 | 17..43 | 100 | -> | Plus |
2L | 456797..457338 | 553..1094 | 100 | -> | Plus |
2L | 457400..457562 | 1095..1257 | 100 | -> | Plus |
2L | 457628..458387 | 1258..2019 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:34 Download gff for
BO13228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 455801..455827 | 17..43 | 100 | -> | Plus |
arm_2L | 456086..456223 | 44..181 | 100 | -> | Plus |
arm_2L | 456289..456468 | 182..361 | 100 | -> | Plus |
arm_2L | 456539..456729 | 362..552 | 100 | -> | Plus |
arm_2L | 456797..457338 | 553..1094 | 100 | -> | Plus |
arm_2L | 457400..457562 | 1095..1257 | 100 | -> | Plus |
arm_2L | 457628..458387 | 1258..2019 | 99 | | Plus |
BO13228.pep Sequence
Translation from 16 to 2035
> BO13228.pep
MSPKYHNFEIALVYFLLLIPWPPTNVIRILCSRDNSRLVRKIVRSKWTPI
LDKHQVKLPLECPLHPFRDVFAPRQDAKQRDRPTQWTCRKCGKSFYQEKH
LDLHFDTRHKSIINEAEDAVCLADFCDIMRCEVFETEDASSLKFGDQHIV
TDIEVWGDSLGQNSALAKANAAYLSLIPRTSTLGASRAAKVQNRQLLQDK
PSQASKQNQSPAGERTHPQSHHHPRDRASTTANPLRLDPSPEDGSAARPR
SAGEKLLNKLKELGKAHLKPAADPEASRQNETGEEEDEKGSGQPEGSGQS
ADEVKTEEGSGANGNGNKARANCKPEELSKLKNRCEILLRSCIGGLLLSM
SDQAFKEMEDEMNKAVCWYLTCDRYWEDGPLEPRAFPWGLIVILIFVLST
GICFCYYIIWILFDSEETTINANHYYGQGSIGAGGSIYMPGAAAGHHYHV
DYATRHDLDLDAGGIAGQQQQQQHLLQEQQYYYQQQQQQQQQAASVRDLY
PEQVQYHRHSPRHYIADQRPVGPTVGTPTQGAVRSSSSNANTPLHHRVQH
SGQHPHLQHRHSTSLAYPQDILDRRDYTSSSSRQIATNIVAGSGSGQGAG
APGDTQRHYNTHPRPLETRHRHVGSSQQSLRASASTHEIVQQEAGLGQNE
HYIYVTYPPDLKKRYFEASFLDH
BO13228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4133-PA | 667 | CG4133-PA | 1..667 | 1..667 | 3576 | 100 | Plus |
CG4133-PB | 642 | CG4133-PB | 1..642 | 1..667 | 3400 | 96.3 | Plus |
CG4133-PC | 583 | CG4133-PC | 1..414 | 1..414 | 2217 | 100 | Plus |
dar1-PB | 751 | CG12029-PB | 307..491 | 468..659 | 162 | 31 | Plus |