Clone BO13228 Report

Search the DGRC for BO13228

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG4133-RA
Protein status:BO13228.pep: Imported from assembly
Sequenced Size:2035

Clone Sequence Records

BO13228.3prime Sequence

704 bp (636 high quality bases) assembled on 2006-05-08

> BO13228.3prime
ATGGTCTAGAAAGCTTGCCTCGAAGTAGCGCTTCTTGAGGTCCGGTGGAT
AGGTCACGTAGATGTAGTGCTCGTTCTGACCCAGACCCGCCTCCTGCTGC
ACAATCTCGTGCGTGGAGGCAGAGGCACGAAGGGATTGCTGCGAGGAACC
CACATGGCGATGCCTCGTTTCCAGCGGCCGCGGATGCGTGTTGTAGTGAC
GCTGTGTATCGCCAGGAGCTCCAGCGCCTTGTCCCGATCCTGATCCAGCC
ACTATGTTGGTGGCAATCTGGCGAGAGGAGCTACTTGTATAGTCGCGTCG
GTCTAAAATGTCCTGTGGGTAGGCCAGGCTCGTCGAGTGACGATGTTGCA
GGTGGGGATGCTGTCCCGAATGCTGCACCCGATGGTGCAACGGCGTGTTG
GCGTTGGAGGAGCTGCTGCGAACGGCCCCTTGGGTGGGCGTGCCCACTGT
TGGCCCCACCGGACGCTGATCGGCGATGTAGTGCCGCGGACTGTGGCGAT
GATACTGAACCTGCTCCGGGTACAAGTCCCGAACGGATGCTGCCTGCTGC
TGCTGTTGCTGCTGCTGTTGGTAATAGTACTGCTGCTCCTGAAGCAGGTG
CTGCTGTTGCTGCTGCTGACCAGCTATCCCGCCGGCGTCCAGGGTCCGAG
GTCGTGCCGCGTGGCATAGTCCACATGGTAGTGATGACCCGCTGCTGCTC
CTGG

BO13228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-PA 2004 CG4133-RA 1377..2001 643..19 3125 100 Minus
CG4133-PA 2004 CG4133-RA 1318..1375 704..647 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-RC 2642 CG4133-RC 1601..2284 704..19 3380 99.7 Minus
CG4133-RB 2554 CG4133-RB 1513..2196 704..19 3380 99.7 Minus
CG4133-RA 2629 CG4133-RA 1588..2271 704..19 3380 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 457704..458387 704..19 3350 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 18:53:44 has no hits.

BO13228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:25 Download gff for BO13228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-PA 1318..2004 16..704 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:22 Download gff for BO13228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-PA 1318..2004 16..704 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:57 Download gff for BO13228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1588..2277 13..704 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:15 Download gff for BO13228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1588..2277 13..704 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:15 Download gff for BO13228.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 457704..458393 13..704 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:57 Download gff for BO13228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 457704..458393 13..704 99   Minus

BO13228.5prime Sequence

791 bp (719 high quality bases) assembled on 2006-05-08

> BO13228.5prime
GAAGTTATCAGTCGACATGTCGCCTAAATATCATAATTTCGAGATTGCAC
TGGTCTACTTTCTGCTGCTAATACCATGGCCACCCACGAATGTGATCAGA
ATCCTCTGCTCGCGAGATAACAGCCGACTGGTGCGCAAAATAGTGCGCTC
CAAATGGACTCCCATTCTGGACAAGCATCAGGTGAAGCTGCCGCTGGAGT
GCCCGCTCCATCCGTTCCGGGATGTCTTTGCCCCCCGCCAGGATGCCAAG
CAGAGGGATCGACCTACTCAGTGGACGTGCAGGAAATGTGGCAAGAGCTT
CTACCAGGAGAAGCATCTGGACTTACATTTCGACACACGCCACAAGAGCA
TCATCAATGAGGCGGAGGATGCCGTTTGCCTGGCCGACTTCTGCGACATT
ATGCGGTGTGAGGTATTTGAAACGGAGGACGCATCTAGCCTGAAGTTTGG
TGACCAGCACATTGTCACGGACATCGAGGTCTGGGGCGACTCCCTGGGCC
AGAACTCCGCGTTGGCCAAAGCGAATGCTGCCTACTTGAGCTTAATACCT
AGAACTTCCACATTGGGTGCCTCGCGTGCCGCCAAAGTACAAAATCGTCA
ATTACTTCAAGACAAGCCAAGCCAGGCCAGCAAGCAGAATCAGTCACCGG
CAGGTGAGCGAACACATCCCCAATCCCACCACCATCCCCGAGATCGTGCA
TCCACCACAGCCAATCCCCTTCGCCTAGATCCATCGCCGGAGGACGGGTC
GGCGGCTAGGCCCAGGTCGGCGGGCGAAAAGCTGCTTAACA

BO13228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-PA 2004 CG4133-RA 1..775 17..791 3850 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-RC 2642 CG4133-RC 271..1045 17..791 3860 99.9 Plus
CG4133-RA 2629 CG4133-RA 271..1045 17..791 3860 99.9 Plus
CG4133-RB 2554 CG4133-RB 271..907 17..653 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 456793..457035 549..791 1200 99.6 Plus
2L 23513712 2L 456537..456729 360..552 965 100 Plus
2L 23513712 2L 456287..456469 180..362 915 100 Plus
2L 23513712 2L 456084..456225 42..183 710 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:55:49 has no hits.

BO13228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:26 Download gff for BO13228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-PA 1..774 17..790 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:23 Download gff for BO13228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-PA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:18:47 Download gff for BO13228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 262..1044 7..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:06 Download gff for BO13228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 262..1044 7..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:06 Download gff for BO13228.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 456086..456223 44..181 100 -> Plus
2L 456289..456468 182..361 100 -> Plus
2L 456539..456729 362..552 100 -> Plus
2L 456797..457034 553..790 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:18:47 Download gff for BO13228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 456086..456223 44..181 100 -> Plus
arm_2L 456289..456468 182..361 100 -> Plus
arm_2L 456539..456729 362..552 100 -> Plus
arm_2L 456797..457034 553..790 99   Plus

BO13228.complete Sequence

2035 bp assembled on 2008-08-14

GenBank Submission: FJ632727

> BO13228.complete
GAAGTTATCAGTCGACATGTCGCCTAAATATCATAATTTCGAGATTGCAC
TGGTCTACTTTCTGCTGCTAATACCATGGCCACCCACGAATGTGATCAGA
ATCCTCTGCTCGCGAGATAACAGCCGACTGGTGCGCAAAATAGTGCGCTC
CAAATGGACTCCCATTCTGGACAAGCATCAGGTGAAGCTGCCGCTGGAGT
GCCCGCTCCATCCGTTCCGGGATGTCTTTGCCCCCCGCCAGGATGCCAAG
CAGAGGGATCGACCTACTCAGTGGACGTGCAGGAAATGTGGCAAGAGCTT
CTACCAGGAGAAGCATCTGGACTTACATTTCGACACACGCCACAAGAGCA
TCATCAATGAGGCGGAGGATGCCGTTTGCCTGGCCGACTTCTGCGACATT
ATGCGGTGTGAGGTATTTGAAACGGAGGACGCATCTAGCCTGAAGTTTGG
TGACCAGCACATTGTCACGGACATCGAGGTCTGGGGCGACTCCCTGGGCC
AGAACTCCGCGTTGGCCAAAGCGAATGCTGCCTACTTGAGCTTAATACCT
AGAACTTCCACATTGGGTGCCTCGCGTGCCGCCAAAGTACAAAATCGTCA
ATTACTTCAAGACAAGCCAAGCCAGGCCAGCAAGCAGAATCAGTCACCGG
CAGGTGAGCGAACACATCCCCAATCCCACCACCATCCCCGAGATCGTGCA
TCCACCACAGCCAATCCCCTTCGCCTAGATCCATCGCCGGAGGACGGGTC
GGCGGCTAGGCCCAGGTCGGCGGGCGAGAAGCTGCTTAACAAGCTTAAGG
AGCTGGGGAAGGCGCACCTAAAGCCGGCAGCGGATCCGGAGGCCAGCAGG
CAGAACGAGACCGGCGAGGAGGAGGACGAAAAGGGGAGTGGACAACCTGA
GGGCAGTGGCCAGTCCGCTGATGAGGTCAAAACGGAGGAGGGATCGGGGG
CTAATGGAAACGGAAACAAGGCCAGAGCCAATTGCAAGCCGGAGGAGTTG
AGTAAGCTGAAGAACCGCTGCGAGATCCTGCTAAGGAGCTGCATCGGGGG
ATTGCTGCTGTCCATGTCGGATCAGGCCTTCAAGGAGATGGAAGATGAAA
TGAACAAGGCGGTGTGCTGGTACTTGACTTGCGATCGATACTGGGAGGAT
GGTCCCTTGGAGCCCCGAGCCTTTCCCTGGGGTCTAATCGTGATCCTGAT
CTTCGTACTCTCCACTGGGATCTGCTTCTGCTACTACATTATCTGGATCC
TGTTCGACTCCGAAGAAACGACAATCAACGCGAACCACTACTACGGCCAG
GGATCCATCGGCGCCGGCGGGAGCATCTACATGCCAGGAGCAGCAGCGGG
TCATCACTACCATGTGGACTATGCCACGCGGCACGACCTCGACCTGGACG
CCGGCGGGATAGCTGGTCAGCAGCAGCAACAGCAGCACCTGCTTCAGGAG
CAGCAGTACTATTACCAACAGCAGCAGCAACAGCAGCAGCAGGCAGCATC
CGTTCGGGACTTGTACCCGGAGCAGGTTCAGTATCATCGCCACAGTCCGC
GGCACTACATCGCCGATCAGCGTCCGGTGGGGCCAACAGTGGGCACGCCC
ACCCAAGGGGCCGTTCGCAGCAGCTCCTCCAACGCCAACACGCCGTTGCA
CCATCGGGTGCAGCATTCGGGACAGCATCCCCACCTGCAACATCGTCACT
CGACGAGCCTGGCCTACCCACAGGACATTTTAGACCGACGCGACTATACA
AGTAGCTCCTCTCGCCAGATTGCCACCAACATAGTGGCTGGATCAGGATC
GGGACAAGGCGCTGGAGCTCCTGGCGATACACAGCGTCACTACAACACGC
ATCCGCGGCCGCTGGAAACGAGGCATCGCCATGTGGGTTCCTCGCAGCAA
TCCCTTCGTGCCTCTGCCTCCACGCACGAGATTGTGCAGCAGGAGGCGGG
TCTGGGTCAGAACGAGCACTACATCTACGTGACCTATCCACCGGACCTCA
AGAAGCGCTACTTCGAGGCAAGCTTTCTAGACCAT

BO13228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-RA 2004 CG4133-PA 1..2001 17..2017 10005 100 Plus
CG4133-RC 1752 CG4133-PC 1..1752 17..1755 8530 99.3 Plus
CG4133-RB 1929 CG4133-PB 636..1926 727..2017 6455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-RA 2629 CG4133-RA 271..2271 17..2017 10005 100 Plus
CG4133-RC 2642 CG4133-RC 271..2284 17..2017 9840 99.4 Plus
CG4133-RB 2554 CG4133-RB 906..2196 727..2017 6455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 457628..458387 1258..2017 3800 100 Plus
2L 23513712 2L 456793..457338 549..1094 2730 100 Plus
2L 23513712 2L 456537..456729 360..552 965 100 Plus
2L 23513712 2L 456287..456469 180..362 915 100 Plus
2L 23513712 2L 457398..457562 1093..1257 825 100 Plus
2L 23513712 2L 456084..456225 42..183 710 100 Plus
Blast to na_te.dros performed 2014-11-27 10:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1310..1360 1069..1019 120 70.6 Minus

BO13228.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:31 Download gff for BO13228.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 250..2265 7..2023 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:34 Download gff for BO13228.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 271..2271 17..2019 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:22 Download gff for BO13228.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 259..2259 17..2019 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:23 Download gff for BO13228.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 271..2271 17..2019 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:23 Download gff for BO13228.complete
Subject Subject Range Query Range Percent Splice Strand
2L 456086..456223 44..181 100 -> Plus
2L 456289..456468 182..361 100 -> Plus
2L 456539..456729 362..552 100 -> Plus
2L 455801..455827 17..43 100 -> Plus
2L 456797..457338 553..1094 100 -> Plus
2L 457400..457562 1095..1257 100 -> Plus
2L 457628..458387 1258..2019 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:34 Download gff for BO13228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 455801..455827 17..43 100 -> Plus
arm_2L 456086..456223 44..181 100 -> Plus
arm_2L 456289..456468 182..361 100 -> Plus
arm_2L 456539..456729 362..552 100 -> Plus
arm_2L 456797..457338 553..1094 100 -> Plus
arm_2L 457400..457562 1095..1257 100 -> Plus
arm_2L 457628..458387 1258..2019 99   Plus

BO13228.pep Sequence

Translation from 16 to 2035

> BO13228.pep
MSPKYHNFEIALVYFLLLIPWPPTNVIRILCSRDNSRLVRKIVRSKWTPI
LDKHQVKLPLECPLHPFRDVFAPRQDAKQRDRPTQWTCRKCGKSFYQEKH
LDLHFDTRHKSIINEAEDAVCLADFCDIMRCEVFETEDASSLKFGDQHIV
TDIEVWGDSLGQNSALAKANAAYLSLIPRTSTLGASRAAKVQNRQLLQDK
PSQASKQNQSPAGERTHPQSHHHPRDRASTTANPLRLDPSPEDGSAARPR
SAGEKLLNKLKELGKAHLKPAADPEASRQNETGEEEDEKGSGQPEGSGQS
ADEVKTEEGSGANGNGNKARANCKPEELSKLKNRCEILLRSCIGGLLLSM
SDQAFKEMEDEMNKAVCWYLTCDRYWEDGPLEPRAFPWGLIVILIFVLST
GICFCYYIIWILFDSEETTINANHYYGQGSIGAGGSIYMPGAAAGHHYHV
DYATRHDLDLDAGGIAGQQQQQQHLLQEQQYYYQQQQQQQQQAASVRDLY
PEQVQYHRHSPRHYIADQRPVGPTVGTPTQGAVRSSSSNANTPLHHRVQH
SGQHPHLQHRHSTSLAYPQDILDRRDYTSSSSRQIATNIVAGSGSGQGAG
APGDTQRHYNTHPRPLETRHRHVGSSQQSLRASASTHEIVQQEAGLGQNE
HYIYVTYPPDLKKRYFEASFLDH

BO13228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-PA 667 CG4133-PA 1..667 1..667 3576 100 Plus
CG4133-PB 642 CG4133-PB 1..642 1..667 3400 96.3 Plus
CG4133-PC 583 CG4133-PC 1..414 1..414 2217 100 Plus
dar1-PB 751 CG12029-PB 307..491 468..659 162 31 Plus