Clone BO13233 Report

Search the DGRC for BO13233

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG18294-RA
Protein status:BO13233.pep: validated full length
Sequenced Size:457

Clone Sequence Records

BO13233.3prime Sequence

455 bp (454 high quality bases) assembled on 2006-05-08

> BO13233.3prime
ATGGTCTAGAAAGCTTGCAAGAAGAACAGGAGCTGATGGCAAGGCACTGT
ATGCCAAAGGCGAGGTGTAAGCCAAGGAGGAAATGTGGGCCAATGGAGCA
GCAGCGTACTTGGCCACAACAGGAGCAGCCAATGGAGCAGCAGCGTACTT
GGCCACCACAGGAGCGGCCAATGGAGCAGCAGCGTACTTGGCCACCACAG
GAGCGGCAACGGGAGCAATCACAGGAGCAGCGGCGATTCCATTGTAGTTC
CTGGCGATAACCTGGCTACTGGTGGCGGTCACAACTGGAGCGGGAGCAGC
TACCACGGCAGCAGGAGCTGAGTAAGCCAGAGGAGCAGAGTAAGCCAGAG
GAGCAGTGTAAGCAAGGGGAGCACCCAGAAGTCCAGGCTTGGCAGCAGCG
CAGGCAACGATAGCCAGAATAACAACGGCGGATTTGAACATGTCGACTGA
TAACT

BO13233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-PA 426 CG18294-RA 1..423 441..19 2115 100 Minus
CG12519-PA 396 CG12519-RA 1..299 441..143 1445 99.3 Minus
CG14096-PA 369 CG14096-RA 1..269 441..173 1295 99.2 Minus
CG32213-PA 465 CG32213-RA 154..300 345..199 585 95.9 Minus
CG32208-PA 465 825-Oak-RA 154..300 345..199 585 95.9 Minus
CG32214-PA 426 CG32214-RA 154..300 345..199 585 95.9 Minus
CG33255-PA 768 CG33255-RA 229..387 405..247 570 94.3 Minus
CG32213-PA 465 CG32213-RA 107..186 410..331 375 98.7 Minus
CG32208-PA 465 825-Oak-RA 107..186 410..331 375 98.7 Minus
CG32214-PA 426 CG32214-RA 107..186 410..331 375 98.7 Minus
CG12519-PA 396 CG12519-RA 235..299 168..104 275 96.9 Minus
CG33255-PA 768 CG33255-RA 566..645 299..220 250 92.5 Minus
CG32212-PA 336 CG32212-RA 174..258 259..175 225 90.5 Minus
CG12519-PA 396 CG12519-RA 238..275 126..89 165 97.3 Minus
CG14096-PA 369 CG14096-RA 235..269 168..134 150 97.1 Minus
CG33255-PA 768 CG33255-RA 637..666 204..175 150 100 Minus
CG33255-PA 768 CG33255-RA 637..666 165..136 150 100 Minus
CG32212-PA 336 CG32212-RA 64..113 378..329 150 92 Minus
CG33255-PA 768 CG33255-RA 140..172 275..307 140 96.9 Plus
CG33255-PA 768 CG33255-RA 634..666 129..97 140 96.9 Minus
CG32213-PA 465 CG32213-RA 291..368 181..104 140 87.1 Minus
CG32208-PA 465 825-Oak-RA 291..368 181..104 140 87.1 Minus
CG32213-PA 465 CG32213-RA 307..368 204..143 135 88.7 Minus
CG32208-PA 465 825-Oak-RA 307..368 204..143 135 88.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-RA 507 CG18294-RA 55..477 441..19 2115 100 Minus
CG12519-RB 600 CG12519-RB 53..360 441..134 1480 98.7 Minus
CG12519-RA 507 CG12519-RA 53..360 441..134 1480 98.7 Minus
CG18294-RA 507 CG18294-RA 279..368 178..89 375 94.4 Minus
CG18294-RA 507 CG18294-RA 318..407 217..128 375 94.4 Minus
CG12519-RB 600 CG12519-RB 277..360 178..95 315 91.7 Minus
CG18294-RA 507 CG18294-RA 279..330 139..88 185 90.4 Minus
CG18294-RA 507 CG18294-RA 357..408 217..166 185 90.4 Minus
CG12519-RB 600 CG12519-RB 277..327 139..89 180 90.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19475047..19475457 19..429 2055 100 Plus
3L 28110227 3L 19472610..19472905 429..134 1420 98.6 Minus
3L 28110227 3L 19466699..19466962 166..429 1260 98.5 Plus
3L 28110227 3L 19471808..19472096 125..419 745 84.4 Plus
3L 28110227 3L 19475971..19476259 419..125 745 84.4 Minus
3L 28110227 3L 19478373..19478568 409..214 740 91.8 Minus
3L 28110227 3L 19423849..19424044 409..214 725 91.3 Minus
3L 28110227 3L 19467481..19467687 419..195 700 88.4 Minus
3L 28110227 3L 19488045..19488279 409..166 615 84.4 Minus
3L 28110227 3L 19475117..19475206 128..217 375 94.4 Plus
3L 28110227 3L 19475156..19475245 89..178 375 94.4 Plus
3L 28110227 3L 19423125..19423224 212..311 320 88 Plus
3L 28110227 3L 19472822..19472905 178..95 315 91.7 Minus
3L 28110227 3L 19424757..19424836 299..220 310 92.5 Minus
3L 28110227 3L 19471817..19471903 95..181 255 86.2 Plus
3L 28110227 3L 19476164..19476250 181..95 255 86.2 Minus
3L 28110227 3L 19464433..19464518 215..300 220 83.7 Plus
3L 28110227 3L 19475116..19475167 166..217 185 90.4 Plus
3L 28110227 3L 19475194..19475245 88..139 185 90.4 Plus
3L 28110227 3L 19472822..19472872 139..89 180 90.2 Minus
Blast to na_te.dros performed 2015-02-10 16:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 281..356 147 69.7 Plus

BO13233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:33 Download gff for BO13233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-PA 1..426 18..441 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:34 Download gff for BO13233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-PA 1..426 18..441 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:43 Download gff for BO13233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 49..488 10..451 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:12 Download gff for BO13233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 49..488 10..451 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:12 Download gff for BO13233.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19475036..19475457 10..429 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:43 Download gff for BO13233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19468136..19468557 10..429 99 <- Plus

BO13233.5prime Sequence

455 bp (454 high quality bases) assembled on 2006-05-08

> BO13233.5prime
GAAGTTATCACTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCCGCTCCTGT
GGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGTTGTGGCCAAGT
ACGCTGCTGCTCCATTGGCCCACATTTCCTCCTTGGCTTACACCTCGCCT
TTGGCATACAGTGCCTTGCCATCAGCTCCTGTTCTTCTTGCAAGCTTTCT
AGACC

BO13233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-PA 426 CG18294-RA 1..423 17..439 2115 100 Plus
CG12519-PA 396 CG12519-RA 1..299 17..315 1445 99.3 Plus
CG14096-PA 369 CG14096-RA 1..269 17..285 1295 99.2 Plus
CG32213-PA 465 CG32213-RA 154..300 113..259 585 95.9 Plus
CG32208-PA 465 825-Oak-RA 154..300 113..259 585 95.9 Plus
CG32214-PA 426 CG32214-RA 154..300 113..259 585 95.9 Plus
CG33255-PA 768 CG33255-RA 229..387 53..211 570 94.3 Plus
CG32213-PA 465 CG32213-RA 107..186 48..127 375 98.7 Plus
CG32208-PA 465 825-Oak-RA 107..186 48..127 375 98.7 Plus
CG32214-PA 426 CG32214-RA 107..186 48..127 375 98.7 Plus
CG12519-PA 396 CG12519-RA 235..299 290..354 275 96.9 Plus
CG33255-PA 768 CG33255-RA 566..645 159..238 250 92.5 Plus
CG32212-PA 336 CG32212-RA 174..258 199..283 225 90.5 Plus
CG12519-PA 396 CG12519-RA 238..275 332..369 165 97.3 Plus
CG14096-PA 369 CG14096-RA 235..269 290..324 150 97.1 Plus
CG33255-PA 768 CG33255-RA 637..666 254..283 150 100 Plus
CG33255-PA 768 CG33255-RA 637..666 293..322 150 100 Plus
CG32212-PA 336 CG32212-RA 64..113 80..129 150 92 Plus
CG33255-PA 768 CG33255-RA 634..666 329..361 140 96.9 Plus
CG33255-PA 768 CG33255-RA 140..172 183..151 140 96.9 Minus
CG32213-PA 465 CG32213-RA 291..368 277..354 140 87.1 Plus
CG32208-PA 465 825-Oak-RA 291..368 277..354 140 87.1 Plus
CG32213-PA 465 CG32213-RA 307..368 254..315 135 88.7 Plus
CG32208-PA 465 825-Oak-RA 307..368 254..315 135 88.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-RA 507 CG18294-RA 55..477 17..439 2115 100 Plus
CG12519-RB 600 CG12519-RB 53..360 17..324 1480 98.7 Plus
CG12519-RA 507 CG12519-RA 53..360 17..324 1480 98.7 Plus
CG18294-RA 507 CG18294-RA 279..368 280..369 375 94.4 Plus
CG18294-RA 507 CG18294-RA 318..407 241..330 375 94.4 Plus
CG12519-RB 600 CG12519-RB 277..360 280..363 315 91.7 Plus
CG18294-RA 507 CG18294-RA 279..330 319..370 185 90.4 Plus
CG18294-RA 507 CG18294-RA 357..408 241..292 185 90.4 Plus
CG12519-RB 600 CG12519-RB 277..327 319..369 180 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19475047..19475457 439..29 2055 100 Minus
3L 28110227 3L 19472610..19472905 29..324 1420 98.6 Plus
3L 28110227 3L 19466699..19466962 292..29 1260 98.5 Minus
3L 28110227 3L 19471808..19472096 333..39 745 84.4 Minus
3L 28110227 3L 19475971..19476259 39..333 745 84.4 Plus
3L 28110227 3L 19478373..19478568 49..244 740 91.8 Plus
3L 28110227 3L 19423849..19424044 49..244 725 91.3 Plus
3L 28110227 3L 19467481..19467687 39..263 700 88.4 Plus
3L 28110227 3L 19488045..19488279 49..292 615 84.4 Plus
3L 28110227 3L 19475117..19475206 330..241 375 94.4 Minus
3L 28110227 3L 19475156..19475245 369..280 375 94.4 Minus
3L 28110227 3L 19423125..19423224 246..147 320 88 Minus
3L 28110227 3L 19472822..19472905 280..363 315 91.7 Plus
3L 28110227 3L 19424757..19424836 159..238 310 92.5 Plus
3L 28110227 3L 19471817..19471903 363..277 255 86.2 Minus
3L 28110227 3L 19476164..19476250 277..363 255 86.2 Plus
3L 28110227 3L 19464433..19464518 243..158 220 83.7 Minus
3L 28110227 3L 19475116..19475167 292..241 185 90.4 Minus
3L 28110227 3L 19475194..19475245 370..319 185 90.4 Minus
3L 28110227 3L 19472822..19472872 319..369 180 90.2 Plus
Blast to na_te.dros performed 2015-02-13 08:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 177..102 147 69.7 Minus

BO13233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:34 Download gff for BO13233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-PA 1..426 17..440 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:36 Download gff for BO13233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-PA 1..426 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:09 Download gff for BO13233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 49..488 7..448 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:15:43 Download gff for BO13233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 49..488 7..448 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:15:43 Download gff for BO13233.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19475036..19475457 29..448 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:09 Download gff for BO13233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19468136..19468557 29..448 99 <- Minus

BO13233.complete Sequence

457 bp assembled on 2006-10-11

GenBank Submission: FJ632728

> BO13233.complete
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCCGCTCCTGT
GGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGTTGTGGCCAAGT
ACGCTGCTGCTCCATTGGCCCACATTTCCTCCTTGGCTTACACCTCGCCT
TTGGCATACAGTGCCTTGCCATCAGCTCCTGTTCTTCTTGCAAGCTTTCT
AGACCAT

BO13233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-RA 426 CG18294-PA 1..423 17..439 2115 100 Plus
CG12519-RB 396 CG12519-PB 1..308 17..324 1480 98.7 Plus
CG12519-RA 396 CG12519-PA 1..308 17..324 1480 98.7 Plus
CG18294-RA 426 CG18294-PA 225..314 280..369 375 94.4 Plus
CG18294-RA 426 CG18294-PA 264..353 241..330 375 94.4 Plus
CG12519-RB 396 CG12519-PB 225..308 280..363 315 91.7 Plus
CG18294-RA 426 CG18294-PA 225..276 319..370 185 90.4 Plus
CG18294-RA 426 CG18294-PA 303..354 241..292 185 90.4 Plus
CG12519-RB 396 CG12519-PB 225..275 319..369 180 90.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-RA 507 CG18294-RA 55..477 17..439 2115 100 Plus
CG12519-RB 600 CG12519-RB 53..360 17..324 1480 98.7 Plus
CG12519-RA 507 CG12519-RA 53..360 17..324 1480 98.7 Plus
CG18294-RA 507 CG18294-RA 318..407 241..330 375 94.4 Plus
CG18294-RA 507 CG18294-RA 279..368 280..369 375 94.4 Plus
CG12519-RB 600 CG12519-RB 277..360 280..363 315 91.7 Plus
CG18294-RA 507 CG18294-RA 357..408 241..292 185 90.4 Plus
CG18294-RA 507 CG18294-RA 279..330 319..370 185 90.4 Plus
CG12519-RB 600 CG12519-RB 277..327 319..369 180 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19475047..19475457 439..29 2055 100 Minus
3L 28110227 3L 19472610..19472905 29..324 1420 98.6 Plus
3L 28110227 3L 19466699..19466962 292..29 1260 98.5 Minus
3L 28110227 3L 19471808..19472096 333..39 745 84.4 Minus
3L 28110227 3L 19475971..19476259 39..333 745 84.4 Plus
3L 28110227 3L 19478373..19478568 49..244 740 91.8 Plus
3L 28110227 3L 19423849..19424044 49..244 725 91.3 Plus
3L 28110227 3L 19467481..19467687 39..263 700 88.4 Plus
3L 28110227 3L 19488045..19488279 49..292 615 84.4 Plus
3L 28110227 3L 19475117..19475206 330..241 375 94.4 Minus
3L 28110227 3L 19475156..19475245 369..280 375 94.4 Minus
3L 28110227 3L 19423125..19423224 246..147 320 88 Minus
3L 28110227 3L 19472822..19472905 280..363 315 91.7 Plus
3L 28110227 3L 19424757..19424836 159..238 310 92.5 Plus
3L 28110227 3L 19471817..19471903 363..277 255 86.2 Minus
3L 28110227 3L 19476164..19476250 277..363 255 86.2 Plus
3L 28110227 3L 19464433..19464518 243..158 220 83.7 Minus
3L 28110227 3L 19475116..19475167 292..241 185 90.4 Minus
3L 28110227 3L 19475194..19475245 370..319 185 90.4 Minus
3L 28110227 3L 19472822..19472872 319..369 180 90.2 Plus
Blast to na_te.dros performed 2014-11-27 07:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2777..2849 177..102 147 69.7 Minus

BO13233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:57 Download gff for BO13233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 1..426 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:33 Download gff for BO13233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 45..484 7..448 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:56 Download gff for BO13233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 60..477 22..441 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:57 Download gff for BO13233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 45..484 7..448 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:13 Download gff for BO13233.complete
Subject Subject Range Query Range Percent Splice Strand
CG18294-RA 60..477 22..441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:13 Download gff for BO13233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19475045..19475457 29..441 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:56 Download gff for BO13233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19468145..19468557 29..441 99   Minus

BO13233.pep Sequence

Translation from 16 to 457

> BO13233.pep
MFKSAVVILAIVACAAAKPGLLGAPLAYTAPLAYSAPLAYSAPAAVVAAP
APVVTATSSQVIARNYNGIAAAPVIAPVAAPVVAKYAAAPLAAPVVAKYA
AAPLAAPVVAKYAAAPLAHISSLAYTSPLAYSALPSAPVLLASFLDH

BO13233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG18294-PA 141 CG18294-PA 1..141 1..141 678 100 Plus
CG12519-PB 131 CG12519-PB 1..131 1..141 560 85.8 Plus
CG12519-PA 131 CG12519-PA 1..131 1..141 560 85.8 Plus
CG14096-PA 122 CG14096-PA 1..122 1..141 486 76.8 Plus
825-Oak-PB 129 CG32208-PB 1..128 1..145 480 77.2 Plus