Clone Sequence Records
BO13234.complete Sequence
2095 bp assembled on 2009-09-17
GenBank Submission: FJ632729
> BO13234.complete
GAAGTTATCAGTCGACATGAGCGAGAACGAGAAGCGTCCCGATCTGGAGG
ATCAGGATCAGGATCAGAATCAGGAGCAGGCTGGCGGCAGGAAAATGGAG
ATCCTGCTGGAACTAAACCTAAAGCAGAAGCTGGCCACCCGACTAGGCAC
CATCCTGCTGGCCACAGTGATCTTCGGCGCCTTTTGCTGGGACAACGCGT
TGGCCAGTCTAACACTGGGAGCAGTGGTGGCTCTCCTGCTCAGAAATCCC
ACCTTCGTCTTTGCCTTGGTAATGACCGCGTCCAGGGACCTAAAGGCTTT
CCAGCGATTCGTGGCCCTCAACATCTACCTGCTAAGAAAGGATCGCGGCG
GATTCACTGTGGCCCGCTGTTTCCAGGACCAGGCCAGACGCCGCCCCAAA
AAGACATGCTTCGTGATGGACGATCGCCATTTAAGCTTTGCAGAGGCTCT
GGAGTTTAGCCAAAAGATAGCTGGATATTTTAGCGATCGCGGCCTGGAGA
GGGGCGACTGTGTGGCCCTACTAATGGAAACGCGTCTGGAGTATCCCTGC
ATTTGGTTGGGTCTCTCCCAGCTCGGGGTAATCACAGCCCTTATTAACTC
CAATCTGCGCGGGGAGTCTCTGCTGCACTCCATCAAAGTGGCCAATGCCA
AGGCCCTAATTGTGGGCAGTGAACTCCTGGATGTGCTGGTATCACTTAGG
GAGAAGGAGCAGTTGGACGAGGTGCCCATCTATCAGTACACAGATGACGA
GGTTCGCGGGGTGGCTGGACATGATCTTTTGCCAGGAGCTGTGGACTTGG
TTACTGCTCTAAAGACCCAAAAGAAACTGGAGCTACCGAGTGCTGTCTGT
CCTGGAGAAGCTCGTTCCAAATTGCTCTACGTTTACACCTCTGGAACTAC
GGGCTTGCCCAAAGCAGCTGTGATCACCAACCTGCGGTTCCTCTTCATGT
CTGCAGGATCCTACTACATGCTCAAGATGTCCAGCGACGATGTGGTGTAC
GATCCCCTTCCCCTCTACCACACCGCTGGTGGAATTGTGGGAGTGGGCAA
TGCCATCCTCAATGGATCCACGGTGGTGCTGCGCAAAAAGTTCTCGGCCA
GGAACTTCTGGCTTGACTGCGATCGCCACAACTGCACTGTGGCCCAGTAT
ATCGGGGAGCTGTGTCGCTATCTTCTGGCCACCTCCTACTCCCCCGATCA
GCAGAAGCACAACCTGCGTCTGATGTACGGAAATGGACTGAGGCCACAGA
TCTGGTCGCAGTTCGTCCGTCGCTTCGGTATTCCGCACATAGGAGAAATT
TACGGCGCCACCGAGGGAAACTCCAACCTGATCAACATCACCAACCGAGT
GGGGGCCATCGGATTTGTTCCCGTCTACGGATCGAGCCTCTACCCTGTTC
AAGTCCTGCGGTGCGACGAGTACACGGGTGAGCTGCTCAAGGACTCCAAG
GGTCACTGCATCAGGTGTCAGCCTGGGCAAGCGGGTCTCCTGGTGGGCAA
GGTGGACGCTCGGCGGGCCGTGAGTGCCTTCCATGGATACGCCGATAAGG
GAGCCTCGGAGCAGAAGCTCCTTCGAAATGTCTTCACATCCGGAGACGTC
TTCTTTAACTCGGGCGACATGGTGGTGCGAGACATACTCGGTTACTTTTA
CTTCAAGGATCGCACGGGAGACACCTTCCGCTGGCGGGGTGAAAACGTCG
CCACCCAGGAAGTGGAGGCCATTATCACGAACTGTGTTGGCTTGGAGGAC
TGCGTGGTCTATGGCGTGCAGATCCCCCATGTGGAGGGCAAGGCGGGAAT
GGCGGCGATTGTGGATCCGGAGCGCAAGGTGGACATGGATTACCTGTCCG
TGGTGCTGCGGGGCAGTTTGCCTCCGTACGCTCGCCCCCTGTTCATCCGA
CTGCTGGACGAGATTCCGCGCACCGCCACCTTCAAGCTGAAGAAACGGGA
GTTGGCCAAAGAGGCGTATGACATCGGCCAGCTCTCAGATCCCATATACT
ACCTGAATCGGGACGGTATCTACAGACCACTCAGTCAGGAGCAGCACGAG
TTGCTGCGATCGGGAAAGGCGGGACTCGCAAGCTTTCTAGACCAT
BO13234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-RA | 2064 | CG3394-PA | 1..2061 | 17..2077 | 10305 | 100 | Plus |
| CG3394-RB | 1986 | CG3394-PB | 1..1983 | 95..2077 | 9915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-RA | 2308 | CG3394-RA | 125..2185 | 17..2077 | 10305 | 100 | Plus |
| CG3394-RB | 2357 | CG3394-RB | 175..2234 | 18..2077 | 10300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24295908..24297384 | 295..1771 | 7385 | 100 | Plus |
| 2R | 25286936 | 2R | 24297678..24297988 | 1767..2077 | 1555 | 100 | Plus |
| 2R | 25286936 | 2R | 24295573..24295850 | 18..295 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:40:04 has no hits.
BO13234.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:14 Download gff for
BO13234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 124..2184 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:13 Download gff for
BO13234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 125..2185 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:19 Download gff for
BO13234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 124..2184 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:05 Download gff for
BO13234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 125..2185 | 17..2079 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:05 Download gff for
BO13234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24295571..24295849 | 17..294 | 99 | -> | Plus |
| 2R | 24295908..24297384 | 295..1771 | 100 | -> | Plus |
| 2R | 24297683..24297988 | 1772..2079 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:13 Download gff for
BO13234.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20183094..20183372 | 17..294 | 99 | -> | Plus |
| arm_2R | 20183431..20184907 | 295..1771 | 100 | -> | Plus |
| arm_2R | 20185206..20185511 | 1772..2079 | 99 | | Plus |
BO13234.3prime Sequence
813 bp (737 high quality bases) assembled on 2006-05-08
> BO13234.3prime
ATGGTCTAGAAAGCTTGCGAGTCCCGCCTTTCCCGATCGCAGCAACTCGT
GCTGCTCCTGACTGAGTGGTCTGTAGATACCGTCCCGATTCAGGTAGTAT
ATGGGATCTGAGAGCTGGCCGATGTCATACGCCTCTTTGGCCAACTCCCG
TTTCTTCAGCTTGAAGGTGGCGGTGCGCGGAATCTCGTCCAGCAGTCGGA
TGAACAGGGGGCGAGCGTACGGAGGCAAACTGCCCCGCAGCACCACGGAC
AGGTAATCCATGTCCACCTTGCGCTCCGGATCCACAATCGCCGCCATTCC
CGCCTTGCCCTCCACATGGGGGATCTGCACGCCATAGACCACGCAGTCCT
CCAAGCCAACACAGTTCGTGATAATGGCCTCCACTTCCTGGGTGGCGACG
TTTTCACCCCGCCAGCGGAAGGTGTCTCCCGTGCGATCCTTGAAGTAAAA
GTAACCGAGTATGTCTCGCACCACCATGTCGCCCGAGTTAAAGAAGACGT
CTCCGGATGTGAAGACATTTCGAAGGAGCTTCTGCTCCGAGGCTCCCTTA
TCGGCGTATCCATGGAAGGCACTCACGGCCCGCCGAGCGTCCACCTTGCC
CACCAGGAGACCCGCTTGCCCAGGCTGACACCTGATGCAGTGACCCTTGG
AGTCCTTGAGCAGCTCACCCGTGTACTCGTCGCACCGCAGGACTTGAACA
GGGTAGAGGCTCGATCCGTAGACGGGAACAAATCCGATGGCCCCCACTCG
GTTGGTGATGTTGATCAGGTTGGAGTTTCCCTCGGTGGCGCCGTAAATTT
CTCCTATGTGCGG
BO13234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-PA | 2064 | CG3394-RA | 1267..2061 | 813..19 | 3975 | 100 | Minus |
| CG3394-PB | 1986 | CG3394-RB | 1189..1983 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-RB | 2357 | CG3394-RB | 1440..2234 | 813..19 | 3975 | 100 | Minus |
| CG3394-RA | 2308 | CG3394-RA | 1391..2185 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24296896..24297384 | 813..325 | 2445 | 100 | Minus |
| 2R | 25286936 | 2R | 24297678..24297988 | 329..19 | 1555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:23:32 has no hits.
BO13234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:35 Download gff for
BO13234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-PB | 1189..1986 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:37 Download gff for
BO13234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-PB | 1189..1986 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:00:03 Download gff for
BO13234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 1391..2185 | 19..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:40 Download gff for
BO13234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 1391..2185 | 19..813 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:40 Download gff for
BO13234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24296896..24297384 | 325..813 | 100 | -> | Minus |
| 2R | 24297683..24297988 | 19..324 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:00:03 Download gff for
BO13234.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20184419..20184907 | 325..813 | 100 | -> | Minus |
| arm_2R | 20185206..20185511 | 19..324 | 100 | | Minus |
BO13234.5prime Sequence
826 bp (702 high quality bases) assembled on 2006-05-08
> BO13234.5prime
GAAGTTATCAGTCGACATGAGCGAGAACGAGAAGCGTCCCGATCTGGAGG
ATCAGGATCAGGATCAGAATCAGGAGCAGGCTGGCGGCAGGAAAATGGAG
ATCCTGCTGGAACTAAACCTAAAGCAGAAGCTGGCCACCCGACTAGGCAC
CATCCTGCTGGCCACAGTGATCTTCGGCGCCTTTTGCTGGGACAACGCGT
TGGCCAGTCTAACACTGGGAGCAGTGGTGGCTCTCCTGCTCAGAAATCCC
ACCTTCGTCTTTGCCTTGGTAATGACCGCGTCCAGGGACCTAAAGGCTTT
CCAGCGATTCGTGGCCCTCAACATCTACCTGCTAAGAAAGGATCGCGGCG
GATTCACTGTGGCCCGCTGTTTCCAGGACCAGGCCAGACGCCGCCCCAAA
AAGACATGCTTCGTGATGGACGATCGCCATTTAAGCTTTGCAGAGGCTCT
GGAGTTTAGCCAAAAGATAGCTGGATATTTTAGCGATCGCGGCCTGGAGA
GGGGCGACTGTGTGGCCCTACTAATGGAAACGCGTCTGGAGTATCCCTGC
ATTTGGTTGGGTCTCTCCCAGCTCGGGGTAATCACAGCCCTTATTAACTC
CAATCTGCGCGGGGAGTCTCTGCTGCACTCCATCAAAGTGGCCAATGCCA
AGGCCCTAATTGTGGGCAGTGAACTCCTGGATGTGCTGGTATCACTTAGG
GAGAAGGAGCAGTTGGACGAGGTGCCCATCTATCAGTACACAGATGACGA
GGTTCGCGGGGTGGCTGGACATGATCTTTTGCCAGGAGCTGTGGACTTGG
TTACTGCTCTAAAGACCCAAAAGAAA
BO13234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-PA | 2064 | CG3394-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
| CG3394-PB | 1986 | CG3394-RB | 1..732 | 95..826 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-RA | 2308 | CG3394-RA | 125..934 | 17..826 | 4050 | 100 | Plus |
| CG3394-RB | 2357 | CG3394-RB | 175..983 | 18..826 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24295908..24296439 | 295..826 | 2660 | 100 | Plus |
| 2R | 25286936 | 2R | 24295573..24295850 | 18..295 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:25 has no hits.
BO13234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:36 Download gff for
BO13234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:39 Download gff for
BO13234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:35 Download gff for
BO13234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 125..931 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:31 Download gff for
BO13234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 125..931 | 17..823 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:31 Download gff for
BO13234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24295569..24295849 | 14..294 | 99 | -> | Plus |
| 2R | 24295908..24296436 | 295..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:35 Download gff for
BO13234.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20183092..20183372 | 14..294 | 99 | -> | Plus |
| arm_2R | 20183431..20183959 | 295..823 | 100 | | Plus |
BO13234.pep Sequence
Translation from 16 to 2095
> BO13234.pep
MSENEKRPDLEDQDQDQNQEQAGGRKMEILLELNLKQKLATRLGTILLAT
VIFGAFCWDNALASLTLGAVVALLLRNPTFVFALVMTASRDLKAFQRFVA
LNIYLLRKDRGGFTVARCFQDQARRRPKKTCFVMDDRHLSFAEALEFSQK
IAGYFSDRGLERGDCVALLMETRLEYPCIWLGLSQLGVITALINSNLRGE
SLLHSIKVANAKALIVGSELLDVLVSLREKEQLDEVPIYQYTDDEVRGVA
GHDLLPGAVDLVTALKTQKKLELPSAVCPGEARSKLLYVYTSGTTGLPKA
AVITNLRFLFMSAGSYYMLKMSSDDVVYDPLPLYHTAGGIVGVGNAILNG
STVVLRKKFSARNFWLDCDRHNCTVAQYIGELCRYLLATSYSPDQQKHNL
RLMYGNGLRPQIWSQFVRRFGIPHIGEIYGATEGNSNLINITNRVGAIGF
VPVYGSSLYPVQVLRCDEYTGELLKDSKGHCIRCQPGQAGLLVGKVDARR
AVSAFHGYADKGASEQKLLRNVFTSGDVFFNSGDMVVRDILGYFYFKDRT
GDTFRWRGENVATQEVEAIITNCVGLEDCVVYGVQIPHVEGKAGMAAIVD
PERKVDMDYLSVVLRGSLPPYARPLFIRLLDEIPRTATFKLKKRELAKEA
YDIGQLSDPIYYLNRDGIYRPLSQEQHELLRSGKAGLASFLDH
BO13234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-PA | 687 | CG3394-PA | 1..687 | 1..687 | 3550 | 100 | Plus |
| CG3394-PB | 661 | CG3394-PB | 1..661 | 27..687 | 3413 | 100 | Plus |
| Fatp-PE | 626 | CG7400-PE | 8..617 | 67..678 | 1438 | 47.4 | Plus |
| Fatp-PB | 626 | CG7400-PB | 8..617 | 67..678 | 1438 | 47.4 | Plus |
| Fatp-PA | 626 | CG7400-PA | 8..617 | 67..678 | 1438 | 47.4 | Plus |
