Clone BO13235 Report

Search the DGRC for BO13235

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG6359-RA
Protein status:BO13235.pep: validated full length
Sequenced Size:535

Clone Sequence Records

BO13235.3prime Sequence

533 bp (532 high quality bases) assembled on 2006-05-08

> BO13235.3prime
ATGGTCTAGAAAGCTTGCTGTGTTCCGAATCTTGCCGGGCACGTAGTTCT
TATCTATGACATTCTCCTGCAGGAACATATGCAGGCAGCGCTCGTTCTGC
GCCAGCGGATGTCCGGCTATCTTGTTGATGAAGGCCTCCAGTCCCTTGCG
CCGCTCCTCGATGAAGCTTTCGTCAAAGATGCCCTCGTCGCCGCGGAAGG
GCATCTGCCGCTTCCATGCCTTTCCTGGGAGTGGTGGCACCACAATCTTG
CTATCCCGCTCCAGCTCGTTTCGCAGCCACTCAAAGTCGCTGTAGCGTCG
CCTGACACTGGACTCCTTTACCTTAAAGACGGGCAGATTGGTCCGCATCC
GGACCTCGTAGTCCGTGTAGCGCTTCTTGCCCGCCGCCATGGTGGTCAGC
GGATTGACCACGTCGATCTCCAGGAAGTTGGCGGGCACGGCGTACGCATC
GTCCAGTGTTTGCTTCTTCACGTTTAGGCGGCGGGTGGCGTCGGCGGTTC
CATCGGACTCAACCATCATGTCGACTGATAACT

BO13235.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6359-PA 504 CG6359-RA 1..501 519..19 2505 100 Minus
CG6359-PB 333 CG6359-RB 1..330 348..19 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-RB 1860 CG6359-RB 314..814 519..19 2505 100 Minus
Snx3-RA 1426 CG6359-RA 314..814 519..19 2505 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12629220..12629449 248..19 1150 100 Minus
3R 32079331 3R 12628344..12628520 519..343 885 100 Minus
3R 32079331 3R 12628888..12628984 343..247 485 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:34:54 has no hits.

BO13235.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:37 Download gff for BO13235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6359-PA 1..504 15..519 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:40 Download gff for BO13235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6359-PA 1..504 15..519 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:10 Download gff for BO13235.3prime
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 307..823 8..527 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:42 Download gff for BO13235.3prime
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 307..823 8..527 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:42 Download gff for BO13235.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12628337..12628520 343..527 97 -> Minus
3R 12628889..12628984 247..342 100 -> Minus
3R 12629222..12629458 8..246 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:10 Download gff for BO13235.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8454059..8454242 343..527 97 -> Minus
arm_3R 8454611..8454706 247..342 100 -> Minus
arm_3R 8454944..8455180 8..246 97   Minus

BO13235.5prime Sequence

533 bp (532 high quality bases) assembled on 2006-05-08

> BO13235.5prime
GAAGTTATCACTCGACATGATGGTTGAGTCCGATGGAACCGCCGACGCCA
CCCGCCGCCTAAACGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTG
CCCGCCAACTTCCTGGAGATCGACGTGGTCAATCCGCTGACCACCATGGC
GGCGGGCAAGAAGCGCTACACGGACTACGAGGTCCGGATGCGGACCAATC
TGCCCGTCTTTAAGGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGAC
TTTGAGTGGCTGCGAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCC
ACCACTCCCAGGAAAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACG
AGGGCATCTTTGACGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAG
GCCTTCATCAACAAGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTG
CCTGCATATGTTCCTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCG
GCAAGATTCGGAACACAGCAAGCTTTCTAGACC

BO13235.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6359-PA 504 CG6359-RA 1..501 17..517 2505 100 Plus
CG6359-PB 333 CG6359-RB 1..330 188..517 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-RB 1860 CG6359-RB 314..814 17..517 2505 100 Plus
Snx3-RA 1426 CG6359-RA 314..814 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12629220..12629449 288..517 1150 100 Plus
3R 32079331 3R 12628344..12628520 17..193 885 100 Plus
3R 32079331 3R 12628888..12628984 193..289 485 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:12:34 has no hits.

BO13235.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:38 Download gff for BO13235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6359-PA 1..504 17..521 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:42 Download gff for BO13235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6359-PA 1..504 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:14 Download gff for BO13235.5prime
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 304..823 5..528 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:43 Download gff for BO13235.5prime
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 304..823 5..528 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:43 Download gff for BO13235.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12628334..12628520 5..193 97 -> Plus
3R 12628889..12628984 194..289 100 -> Plus
3R 12629222..12629458 290..528 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:14 Download gff for BO13235.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8454056..8454242 5..193 97 -> Plus
arm_3R 8454611..8454706 194..289 100 -> Plus
arm_3R 8454944..8455180 290..528 97   Plus

BO13235.complete Sequence

535 bp assembled on 2006-10-11

GenBank Submission: FJ632730

> BO13235.complete
GAAGTTATCAGTCGACATGATGGTTGAGTCCGATGGAACCGCCGACGCCA
CCCGCCGCCTAAACGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTG
CCCGCCAACTTCCTGGAGATCGACGTGGTCAATCCGCTGACCACCATGGC
GGCGGGCAAGAAGCGCTACACGGACTACGAGGTCCGGATGCGGACCAATC
TGCCCGTCTTTAAGGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGAC
TTTGAGTGGCTGCGAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCC
ACCACTCCCAGGAAAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACG
AGGGCATCTTTGACGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAG
GCCTTCATCAACAAGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTG
CCTGCATATGTTCCTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCG
GCAAGATTCGGAACACAGCAAGCTTTCTAGACCAT

BO13235.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-RB 504 CG6359-PB 1..501 17..517 2505 100 Plus
Snx3-RA 504 CG6359-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-RB 1860 CG6359-RB 314..814 17..517 2505 100 Plus
Snx3-RA 1426 CG6359-RA 314..814 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12629220..12629449 288..517 1150 100 Plus
3R 32079331 3R 12628344..12628520 17..193 885 100 Plus
3R 32079331 3R 12628888..12628984 193..289 485 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:41:23 has no hits.

BO13235.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:58 Download gff for BO13235.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 1..504 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:36 Download gff for BO13235.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 297..813 9..528 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:58 Download gff for BO13235.complete
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 314..814 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:58 Download gff for BO13235.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 297..813 9..528 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:24 Download gff for BO13235.complete
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 314..814 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:24 Download gff for BO13235.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12628344..12628520 17..193 100 -> Plus
3R 12628889..12628984 194..289 100 -> Plus
3R 12629222..12629449 290..519 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:58 Download gff for BO13235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8454066..8454242 17..193 100 -> Plus
arm_3R 8454611..8454706 194..289 100 -> Plus
arm_3R 8454944..8455171 290..519 99   Plus

BO13235.pep Sequence

Translation from 16 to 535

> BO13235.pep
MMVESDGTADATRRLNVKKQTLDDAYAVPANFLEIDVVNPLTTMAAGKKR
YTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLRNELERDSKIVVPPLPGK
AWKRQMPFRGDEGIFDESFIEERRKGLEAFINKIAGHPLAQNERCLHMFL
QENVIDKNYVPGKIRNTASFLDH

BO13235.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-PB 167 CG6359-PB 1..167 1..167 872 100 Plus
Snx3-PA 167 CG6359-PA 1..167 1..167 872 100 Plus