Clone Sequence Records
BO13235.3prime Sequence
533 bp (532 high quality bases) assembled on 2006-05-08
> BO13235.3prime
ATGGTCTAGAAAGCTTGCTGTGTTCCGAATCTTGCCGGGCACGTAGTTCT
TATCTATGACATTCTCCTGCAGGAACATATGCAGGCAGCGCTCGTTCTGC
GCCAGCGGATGTCCGGCTATCTTGTTGATGAAGGCCTCCAGTCCCTTGCG
CCGCTCCTCGATGAAGCTTTCGTCAAAGATGCCCTCGTCGCCGCGGAAGG
GCATCTGCCGCTTCCATGCCTTTCCTGGGAGTGGTGGCACCACAATCTTG
CTATCCCGCTCCAGCTCGTTTCGCAGCCACTCAAAGTCGCTGTAGCGTCG
CCTGACACTGGACTCCTTTACCTTAAAGACGGGCAGATTGGTCCGCATCC
GGACCTCGTAGTCCGTGTAGCGCTTCTTGCCCGCCGCCATGGTGGTCAGC
GGATTGACCACGTCGATCTCCAGGAAGTTGGCGGGCACGGCGTACGCATC
GTCCAGTGTTTGCTTCTTCACGTTTAGGCGGCGGGTGGCGTCGGCGGTTC
CATCGGACTCAACCATCATGTCGACTGATAACT
BO13235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6359-PA | 504 | CG6359-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
CG6359-PB | 333 | CG6359-RB | 1..330 | 348..19 | 1650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx3-RB | 1860 | CG6359-RB | 314..814 | 519..19 | 2505 | 100 | Minus |
Snx3-RA | 1426 | CG6359-RA | 314..814 | 519..19 | 2505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12629220..12629449 | 248..19 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 12628344..12628520 | 519..343 | 885 | 100 | Minus |
3R | 32079331 | 3R | 12628888..12628984 | 343..247 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:34:54 has no hits.
BO13235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:37 Download gff for
BO13235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6359-PA | 1..504 | 15..519 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:40 Download gff for
BO13235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6359-PA | 1..504 | 15..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:10 Download gff for
BO13235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx3-RA | 307..823 | 8..527 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:42 Download gff for
BO13235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx3-RA | 307..823 | 8..527 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:42 Download gff for
BO13235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12628337..12628520 | 343..527 | 97 | -> | Minus |
3R | 12628889..12628984 | 247..342 | 100 | -> | Minus |
3R | 12629222..12629458 | 8..246 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:10 Download gff for
BO13235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8454059..8454242 | 343..527 | 97 | -> | Minus |
arm_3R | 8454611..8454706 | 247..342 | 100 | -> | Minus |
arm_3R | 8454944..8455180 | 8..246 | 97 | | Minus |
BO13235.5prime Sequence
533 bp (532 high quality bases) assembled on 2006-05-08
> BO13235.5prime
GAAGTTATCACTCGACATGATGGTTGAGTCCGATGGAACCGCCGACGCCA
CCCGCCGCCTAAACGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTG
CCCGCCAACTTCCTGGAGATCGACGTGGTCAATCCGCTGACCACCATGGC
GGCGGGCAAGAAGCGCTACACGGACTACGAGGTCCGGATGCGGACCAATC
TGCCCGTCTTTAAGGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGAC
TTTGAGTGGCTGCGAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCC
ACCACTCCCAGGAAAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACG
AGGGCATCTTTGACGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAG
GCCTTCATCAACAAGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTG
CCTGCATATGTTCCTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCG
GCAAGATTCGGAACACAGCAAGCTTTCTAGACC
BO13235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6359-PA | 504 | CG6359-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
CG6359-PB | 333 | CG6359-RB | 1..330 | 188..517 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx3-RB | 1860 | CG6359-RB | 314..814 | 17..517 | 2505 | 100 | Plus |
Snx3-RA | 1426 | CG6359-RA | 314..814 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12629220..12629449 | 288..517 | 1150 | 100 | Plus |
3R | 32079331 | 3R | 12628344..12628520 | 17..193 | 885 | 100 | Plus |
3R | 32079331 | 3R | 12628888..12628984 | 193..289 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:12:34 has no hits.
BO13235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:38 Download gff for
BO13235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6359-PA | 1..504 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:42 Download gff for
BO13235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6359-PA | 1..504 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:14 Download gff for
BO13235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx3-RA | 304..823 | 5..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:43 Download gff for
BO13235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx3-RA | 304..823 | 5..528 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:43 Download gff for
BO13235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12628334..12628520 | 5..193 | 97 | -> | Plus |
3R | 12628889..12628984 | 194..289 | 100 | -> | Plus |
3R | 12629222..12629458 | 290..528 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:14 Download gff for
BO13235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8454056..8454242 | 5..193 | 97 | -> | Plus |
arm_3R | 8454611..8454706 | 194..289 | 100 | -> | Plus |
arm_3R | 8454944..8455180 | 290..528 | 97 | | Plus |
BO13235.complete Sequence
535 bp assembled on 2006-10-11
GenBank Submission: FJ632730
> BO13235.complete
GAAGTTATCAGTCGACATGATGGTTGAGTCCGATGGAACCGCCGACGCCA
CCCGCCGCCTAAACGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTG
CCCGCCAACTTCCTGGAGATCGACGTGGTCAATCCGCTGACCACCATGGC
GGCGGGCAAGAAGCGCTACACGGACTACGAGGTCCGGATGCGGACCAATC
TGCCCGTCTTTAAGGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGAC
TTTGAGTGGCTGCGAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCC
ACCACTCCCAGGAAAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACG
AGGGCATCTTTGACGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAG
GCCTTCATCAACAAGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTG
CCTGCATATGTTCCTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCG
GCAAGATTCGGAACACAGCAAGCTTTCTAGACCAT
BO13235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx3-RB | 504 | CG6359-PB | 1..501 | 17..517 | 2505 | 100 | Plus |
Snx3-RA | 504 | CG6359-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx3-RB | 1860 | CG6359-RB | 314..814 | 17..517 | 2505 | 100 | Plus |
Snx3-RA | 1426 | CG6359-RA | 314..814 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12629220..12629449 | 288..517 | 1150 | 100 | Plus |
3R | 32079331 | 3R | 12628344..12628520 | 17..193 | 885 | 100 | Plus |
3R | 32079331 | 3R | 12628888..12628984 | 193..289 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:41:23 has no hits.
BO13235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:58 Download gff for
BO13235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6359-RA | 1..504 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:36 Download gff for
BO13235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6359-RA | 297..813 | 9..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:58 Download gff for
BO13235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx3-RA | 314..814 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:58 Download gff for
BO13235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6359-RA | 297..813 | 9..528 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:24 Download gff for
BO13235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx3-RA | 314..814 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:24 Download gff for
BO13235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12628344..12628520 | 17..193 | 100 | -> | Plus |
3R | 12628889..12628984 | 194..289 | 100 | -> | Plus |
3R | 12629222..12629449 | 290..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:58 Download gff for
BO13235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8454066..8454242 | 17..193 | 100 | -> | Plus |
arm_3R | 8454611..8454706 | 194..289 | 100 | -> | Plus |
arm_3R | 8454944..8455171 | 290..519 | 99 | | Plus |
BO13235.pep Sequence
Translation from 16 to 535
> BO13235.pep
MMVESDGTADATRRLNVKKQTLDDAYAVPANFLEIDVVNPLTTMAAGKKR
YTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLRNELERDSKIVVPPLPGK
AWKRQMPFRGDEGIFDESFIEERRKGLEAFINKIAGHPLAQNERCLHMFL
QENVIDKNYVPGKIRNTASFLDH
BO13235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx3-PB | 167 | CG6359-PB | 1..167 | 1..167 | 872 | 100 | Plus |
Snx3-PA | 167 | CG6359-PA | 1..167 | 1..167 | 872 | 100 | Plus |