Clone Sequence Records
BO13238.3prime Sequence
628 bp (588 high quality bases) assembled on 2006-05-08
> BO13238.3prime
ATGGTCTAGAAAGCTTGCATCGTAGCTTAGGGAAATGGCCGATTTCGGTG
TGGGCAGCGGCGATGTGGTGTCCACATCCTCGTCGTCGTTCTCCTGCGAG
TCCTCCGGTTCTCCCAATGCGTGGACAAACTCGTAGAAGTCAATGCGCCC
GTCGCCGTCCACGTCCACCTCCTTGATCATGTCCTCAATGTCCTCCTCGT
CGAGATCCTCGCCCAGACACTGCAGCACGGCTCGCAAGTCAGAGGCTGTT
ATGTATCCCCGGTTGTGCTTGTCGAAGACGCGGAAGGCGTCGCGTAGTTC
CCGCTCCTCCTGATCGGCGGAGGATAGACCTGACTTATCCTCGTACGTCA
TGTTTGACAGGATATCAACGAACTCCTCAAAACTGACGTTCCCGTCCCCG
TCCACGTCGATCTCCTGCAACATCTCCTGCAGCTCTTCTACTCTGGCAAA
TTGTCCCAGTGACCGCATCACTGTGCCGAGCTCCTCTTTGGTTATGCAGC
CATCGCCATCCTTGTCAAAGAGCCGGAAGGCCTCCCGGAATTCCCGCATT
TGTCCCTTGGAGATGCAGCGGCGTTTTATGCAGGGTCTCGCCGTCAATTA
GGTTGGGTCCGTCGCCAATTCCCAGCTC
BO13238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11638-PA | 1164 | CG11638-RA | 604..1161 | 576..19 | 2790 | 100 | Minus |
CG11638-PA | 1164 | CG11638-RA | 553..606 | 628..575 | 245 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11638-RA | 2462 | CG11638-RA | 928..1536 | 628..19 | 3010 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1015468..1015697 | 398..628 | 1090 | 99.1 | Plus |
X | 23542271 | X | 1015140..1015350 | 189..399 | 1055 | 100 | Plus |
X | 23542271 | X | 1014910..1015079 | 19..188 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:34:33 has no hits.
BO13238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:40 Download gff for
BO13238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-PA | 553..1164 | 16..628 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:44 Download gff for
BO13238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-PA | 553..1164 | 16..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:05 Download gff for
BO13238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-RA | 928..1543 | 12..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:10 Download gff for
BO13238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-RA | 928..1543 | 12..628 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:10 Download gff for
BO13238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1014903..1015079 | 12..188 | 98 | <- | Plus |
X | 1015140..1015349 | 189..398 | 100 | <- | Plus |
X | 1015469..1015697 | 399..628 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:05 Download gff for
BO13238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 908936..909112 | 12..188 | 98 | <- | Plus |
arm_X | 909173..909382 | 189..398 | 100 | <- | Plus |
arm_X | 909502..909730 | 399..628 | 99 | | Plus |
BO13238.5prime Sequence
589 bp (539 high quality bases) assembled on 2006-05-08
> BO13238.5prime
GAAGTTATCAGTCGACATGACGAGAAACGCGGCGGTGAGTGGCGATGAAC
CCGACGAGGAGCAGGCGTCAGCGGTAGTCGCTGAAGGTGAGGATCAGGAG
ACTCAAAACCAGGCGATGCAGGATGATGGGCAACCAGGAGGCGAGGGCCA
CCACCTCAGCAGCGAAAAGCAACAATCGACAGAGCAGTGTCGTCAGAGGC
CGCGGAAAAAATTGACGGACAAGCAACCACAACGAAGTGCTGCCAATTCG
CATCCAGAGCAGGCGGATGCGGACACGGACTCCAGCTCCTGCGAAGGCAT
TAAAGTGGGTCAGCGGAGGGGCACGCGGGTGAGCTACGCTCAGAGAAACC
TTCATGGGGCGGAGCTGGAGGACTACGACTACGATGGGGAAGGGGAGGGG
GAGCGGGAGGAAGATGGGGAGGAGGAAGAAGAGGAGGAAGAATCCNANGA
NGACTACGAACAGNCCTCGAAACCGGAGGGACGTCGACCTTCTGCCCGAA
CCGCCTTGAGCGTCCGCAGCAGACGAAAGACGAAAACCCGTCCATTTTGC
TATGCATCCTCGGACTTGGAGCTGGGAATTGGTGACGGA
BO13238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11638-PA | 1164 | CG11638-RA | 1..573 | 17..589 | 2714 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11638-RA | 2462 | CG11638-RA | 376..948 | 17..589 | 2776 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1015677..1016247 | 589..19 | 2766 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:30:06 has no hits.
BO13238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:41 Download gff for
BO13238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-PA | 1..572 | 17..588 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:46 Download gff for
BO13238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-PA | 1..572 | 17..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:07 Download gff for
BO13238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-RA | 370..947 | 9..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:15:04 Download gff for
BO13238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-RA | 370..947 | 9..588 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:15:04 Download gff for
BO13238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1015678..1016251 | 12..588 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:07 Download gff for
BO13238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 909711..910284 | 12..588 | 98 | | Minus |
BO13238.complete Sequence
1195 bp assembled on 2008-08-14
GenBank Submission: FJ632731
> BO13238.complete
GAAGTTATCAGTCGACATGACGAGAAACGCGGCGGTGAGTGGCGATGAAC
CCGACGAGGAGCAGGCGTCAGCGGTAGTCGCTGAAGGTGAGGATCAGGAG
ACTCAAAACCAGGCGATGCAGGATGATGGGCAACCAGGAGGCGAGGGCCA
CCACCTCAGCAGCGAAAAGCAACAATCGACAGAGCAGTGTCGTCAGAGGC
CGCGGAAAAAATTGACGGACAAGCAACCACAACGAAGTGCTGCCAATTCG
CATCCAGAGCAGGCGGATGCGGACACGGACTCCAGCTCCTGCGAAGGCAT
TAAAGTGGGTCAGCGGAGGGGCACGCGGGTGAGCTACGCTCAGAGAAACC
TTCATGGGGCGGAGCTGGAGGACTACGACTACGATGGGGAAGGGGAGGGG
GAGCGGGAGGAAGATGGGGAGGAGGAAGAAGAGGAGGAAGAATCCTACGA
CGACTACGAACAGTCCTCGAAACCGGAGGGACGTCGACCTTCTGCCCGAA
CCGCCTTGAGCGTCCGCAGCAGACGAAAGACGAAAACCCGTCAAATTTGC
TATGCATCCTCGGACTTGGAGCTGGGAATTGGCGACGGACCCAACCTAAT
CGACGGCGAGACCCTGCATAAACGCCGCTGCATCTCCAAGGGACAAATGC
GGGAATTCCGGGAGGCCTTCCGGCTCTTTGACAAGGATGGCGATGGCTGC
ATAACCAAAGAGGAGCTCGGCACAGTGATGCGGTCACTGGGACAATTTGC
CAGAGTAGAAGAGCTGCAGGAGATGTTGCAGGAGATCGACGTGGACGGGG
ACGGGAACGTCAGTTTTGAGGAGTTCGTTGATATCCTGTCAAACATGACG
TACGAGGATAAGTCAGGTCTATCCTCCGCCGATCAGGAGGAGCGGGAACT
ACGCGACGCCTTCCGCGTCTTCGACAAGCACAACCGGGGATACATAACAG
CCTCTGACTTGCGAGCCGTGCTGCAGTGTCTGGGCGAGGATCTCGACGAG
GAGGACATTGAGGACATGATCAAGGAGGTGGACGTGGACGGCGACGGGCG
CATTGACTTCTACGAGTTTGTCCACGCATTGGGAGAACCGGAGGACTCGC
AGGAGAACGACGACGAGGATGTGGACACCACATCGCCGCTGCCCACACCG
AAATCGGCCATTTCCCTAAGCTACGATGCAAGCTTTCTAGACCAT
BO13238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11638-RA | 1164 | CG11638-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11638-RA | 2462 | CG11638-RA | 376..1536 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1015468..1016247 | 798..19 | 3900 | 100 | Minus |
X | 23542271 | X | 1015140..1015350 | 1007..797 | 1055 | 100 | Minus |
X | 23542271 | X | 1014910..1015079 | 1177..1008 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:52:51 has no hits.
BO13238.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:23 Download gff for
BO13238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-RA | 370..1543 | 9..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:12 Download gff for
BO13238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-RA | 376..1536 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:46 Download gff for
BO13238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-RA | 376..1536 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:18 Download gff for
BO13238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11638-RA | 376..1536 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:18 Download gff for
BO13238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1014907..1015079 | 1008..1179 | 98 | <- | Minus |
X | 1015140..1015349 | 798..1007 | 100 | <- | Minus |
X | 1015469..1016248 | 17..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:12 Download gff for
BO13238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 908940..909112 | 1008..1179 | 98 | <- | Minus |
arm_X | 909173..909382 | 798..1007 | 100 | <- | Minus |
arm_X | 909502..910281 | 17..797 | 99 | | Minus |
BO13238.pep Sequence
Translation from 16 to 1195
> BO13238.pep
MTRNAAVSGDEPDEEQASAVVAEGEDQETQNQAMQDDGQPGGEGHHLSSE
KQQSTEQCRQRPRKKLTDKQPQRSAANSHPEQADADTDSSSCEGIKVGQR
RGTRVSYAQRNLHGAELEDYDYDGEGEGEREEDGEEEEEEEESYDDYEQS
SKPEGRRPSARTALSVRSRRKTKTRQICYASSDLELGIGDGPNLIDGETL
HKRRCISKGQMREFREAFRLFDKDGDGCITKEELGTVMRSLGQFARVEEL
QEMLQEIDVDGDGNVSFEEFVDILSNMTYEDKSGLSSADQEERELRDAFR
VFDKHNRGYITASDLRAVLQCLGEDLDEEDIEDMIKEVDVDGDGRIDFYE
FVHALGEPEDSQENDDEDVDTTSPLPTPKSAISLSYDASFLDH
BO13238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11638-PA | 387 | CG11638-PA | 1..387 | 1..387 | 2010 | 100 | Plus |
Cam-PD | 149 | CG8472-PD | 5..143 | 206..352 | 380 | 49.7 | Plus |
Cam-PC | 149 | CG8472-PC | 5..143 | 206..352 | 380 | 49.7 | Plus |
Cam-PE | 149 | CG8472-PE | 5..143 | 206..352 | 380 | 49.7 | Plus |
Cam-PB | 149 | CG8472-PB | 5..143 | 206..352 | 380 | 49.7 | Plus |
Cam-PD | 149 | CG8472-PD | 59..148 | 190..276 | 183 | 44.4 | Plus |
Cam-PC | 149 | CG8472-PC | 59..148 | 190..276 | 183 | 44.4 | Plus |
Cam-PE | 149 | CG8472-PE | 59..148 | 190..276 | 183 | 44.4 | Plus |
Cam-PD | 149 | CG8472-PD | 7..85 | 289..367 | 156 | 36.7 | Plus |
Cam-PC | 149 | CG8472-PC | 7..85 | 289..367 | 156 | 36.7 | Plus |
Cam-PE | 149 | CG8472-PE | 7..85 | 289..367 | 156 | 36.7 | Plus |