Clone BO13238 Report

Search the DGRC for BO13238

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG11638-RA
Protein status:BO13238.pep: Imported from assembly
Sequenced Size:1195

Clone Sequence Records

BO13238.3prime Sequence

628 bp (588 high quality bases) assembled on 2006-05-08

> BO13238.3prime
ATGGTCTAGAAAGCTTGCATCGTAGCTTAGGGAAATGGCCGATTTCGGTG
TGGGCAGCGGCGATGTGGTGTCCACATCCTCGTCGTCGTTCTCCTGCGAG
TCCTCCGGTTCTCCCAATGCGTGGACAAACTCGTAGAAGTCAATGCGCCC
GTCGCCGTCCACGTCCACCTCCTTGATCATGTCCTCAATGTCCTCCTCGT
CGAGATCCTCGCCCAGACACTGCAGCACGGCTCGCAAGTCAGAGGCTGTT
ATGTATCCCCGGTTGTGCTTGTCGAAGACGCGGAAGGCGTCGCGTAGTTC
CCGCTCCTCCTGATCGGCGGAGGATAGACCTGACTTATCCTCGTACGTCA
TGTTTGACAGGATATCAACGAACTCCTCAAAACTGACGTTCCCGTCCCCG
TCCACGTCGATCTCCTGCAACATCTCCTGCAGCTCTTCTACTCTGGCAAA
TTGTCCCAGTGACCGCATCACTGTGCCGAGCTCCTCTTTGGTTATGCAGC
CATCGCCATCCTTGTCAAAGAGCCGGAAGGCCTCCCGGAATTCCCGCATT
TGTCCCTTGGAGATGCAGCGGCGTTTTATGCAGGGTCTCGCCGTCAATTA
GGTTGGGTCCGTCGCCAATTCCCAGCTC

BO13238.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11638-PA 1164 CG11638-RA 604..1161 576..19 2790 100 Minus
CG11638-PA 1164 CG11638-RA 553..606 628..575 245 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11638-RA 2462 CG11638-RA 928..1536 628..19 3010 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1015468..1015697 398..628 1090 99.1 Plus
X 23542271 X 1015140..1015350 189..399 1055 100 Plus
X 23542271 X 1014910..1015079 19..188 850 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:34:33 has no hits.

BO13238.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:40 Download gff for BO13238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11638-PA 553..1164 16..628 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:44 Download gff for BO13238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11638-PA 553..1164 16..628 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:05 Download gff for BO13238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11638-RA 928..1543 12..628 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:47:10 Download gff for BO13238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11638-RA 928..1543 12..628 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:47:10 Download gff for BO13238.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1014903..1015079 12..188 98 <- Plus
X 1015140..1015349 189..398 100 <- Plus
X 1015469..1015697 399..628 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:05 Download gff for BO13238.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 908936..909112 12..188 98 <- Plus
arm_X 909173..909382 189..398 100 <- Plus
arm_X 909502..909730 399..628 99   Plus

BO13238.5prime Sequence

589 bp (539 high quality bases) assembled on 2006-05-08

> BO13238.5prime
GAAGTTATCAGTCGACATGACGAGAAACGCGGCGGTGAGTGGCGATGAAC
CCGACGAGGAGCAGGCGTCAGCGGTAGTCGCTGAAGGTGAGGATCAGGAG
ACTCAAAACCAGGCGATGCAGGATGATGGGCAACCAGGAGGCGAGGGCCA
CCACCTCAGCAGCGAAAAGCAACAATCGACAGAGCAGTGTCGTCAGAGGC
CGCGGAAAAAATTGACGGACAAGCAACCACAACGAAGTGCTGCCAATTCG
CATCCAGAGCAGGCGGATGCGGACACGGACTCCAGCTCCTGCGAAGGCAT
TAAAGTGGGTCAGCGGAGGGGCACGCGGGTGAGCTACGCTCAGAGAAACC
TTCATGGGGCGGAGCTGGAGGACTACGACTACGATGGGGAAGGGGAGGGG
GAGCGGGAGGAAGATGGGGAGGAGGAAGAAGAGGAGGAAGAATCCNANGA
NGACTACGAACAGNCCTCGAAACCGGAGGGACGTCGACCTTCTGCCCGAA
CCGCCTTGAGCGTCCGCAGCAGACGAAAGACGAAAACCCGTCCATTTTGC
TATGCATCCTCGGACTTGGAGCTGGGAATTGGTGACGGA

BO13238.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11638-PA 1164 CG11638-RA 1..573 17..589 2714 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11638-RA 2462 CG11638-RA 376..948 17..589 2776 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1015677..1016247 589..19 2766 98.8 Minus
Blast to na_te.dros performed on 2015-02-13 08:30:06 has no hits.

BO13238.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:41 Download gff for BO13238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11638-PA 1..572 17..588 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:46 Download gff for BO13238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11638-PA 1..572 17..588 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:07 Download gff for BO13238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11638-RA 370..947 9..588 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:15:04 Download gff for BO13238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11638-RA 370..947 9..588 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:15:04 Download gff for BO13238.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1015678..1016251 12..588 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:07 Download gff for BO13238.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 909711..910284 12..588 98   Minus

BO13238.complete Sequence

1195 bp assembled on 2008-08-14

GenBank Submission: FJ632731

> BO13238.complete
GAAGTTATCAGTCGACATGACGAGAAACGCGGCGGTGAGTGGCGATGAAC
CCGACGAGGAGCAGGCGTCAGCGGTAGTCGCTGAAGGTGAGGATCAGGAG
ACTCAAAACCAGGCGATGCAGGATGATGGGCAACCAGGAGGCGAGGGCCA
CCACCTCAGCAGCGAAAAGCAACAATCGACAGAGCAGTGTCGTCAGAGGC
CGCGGAAAAAATTGACGGACAAGCAACCACAACGAAGTGCTGCCAATTCG
CATCCAGAGCAGGCGGATGCGGACACGGACTCCAGCTCCTGCGAAGGCAT
TAAAGTGGGTCAGCGGAGGGGCACGCGGGTGAGCTACGCTCAGAGAAACC
TTCATGGGGCGGAGCTGGAGGACTACGACTACGATGGGGAAGGGGAGGGG
GAGCGGGAGGAAGATGGGGAGGAGGAAGAAGAGGAGGAAGAATCCTACGA
CGACTACGAACAGTCCTCGAAACCGGAGGGACGTCGACCTTCTGCCCGAA
CCGCCTTGAGCGTCCGCAGCAGACGAAAGACGAAAACCCGTCAAATTTGC
TATGCATCCTCGGACTTGGAGCTGGGAATTGGCGACGGACCCAACCTAAT
CGACGGCGAGACCCTGCATAAACGCCGCTGCATCTCCAAGGGACAAATGC
GGGAATTCCGGGAGGCCTTCCGGCTCTTTGACAAGGATGGCGATGGCTGC
ATAACCAAAGAGGAGCTCGGCACAGTGATGCGGTCACTGGGACAATTTGC
CAGAGTAGAAGAGCTGCAGGAGATGTTGCAGGAGATCGACGTGGACGGGG
ACGGGAACGTCAGTTTTGAGGAGTTCGTTGATATCCTGTCAAACATGACG
TACGAGGATAAGTCAGGTCTATCCTCCGCCGATCAGGAGGAGCGGGAACT
ACGCGACGCCTTCCGCGTCTTCGACAAGCACAACCGGGGATACATAACAG
CCTCTGACTTGCGAGCCGTGCTGCAGTGTCTGGGCGAGGATCTCGACGAG
GAGGACATTGAGGACATGATCAAGGAGGTGGACGTGGACGGCGACGGGCG
CATTGACTTCTACGAGTTTGTCCACGCATTGGGAGAACCGGAGGACTCGC
AGGAGAACGACGACGAGGATGTGGACACCACATCGCCGCTGCCCACACCG
AAATCGGCCATTTCCCTAAGCTACGATGCAAGCTTTCTAGACCAT

BO13238.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11638-RA 1164 CG11638-PA 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11638-RA 2462 CG11638-RA 376..1536 17..1177 5805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1015468..1016247 798..19 3900 100 Minus
X 23542271 X 1015140..1015350 1007..797 1055 100 Minus
X 23542271 X 1014910..1015079 1177..1008 850 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:52:51 has no hits.

BO13238.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:23 Download gff for BO13238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11638-RA 370..1543 9..1184 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:12 Download gff for BO13238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11638-RA 376..1536 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:46 Download gff for BO13238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11638-RA 376..1536 17..1179 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:18 Download gff for BO13238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11638-RA 376..1536 17..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:18 Download gff for BO13238.complete
Subject Subject Range Query Range Percent Splice Strand
X 1014907..1015079 1008..1179 98 <- Minus
X 1015140..1015349 798..1007 100 <- Minus
X 1015469..1016248 17..797 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:12 Download gff for BO13238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 908940..909112 1008..1179 98 <- Minus
arm_X 909173..909382 798..1007 100 <- Minus
arm_X 909502..910281 17..797 99   Minus

BO13238.pep Sequence

Translation from 16 to 1195

> BO13238.pep
MTRNAAVSGDEPDEEQASAVVAEGEDQETQNQAMQDDGQPGGEGHHLSSE
KQQSTEQCRQRPRKKLTDKQPQRSAANSHPEQADADTDSSSCEGIKVGQR
RGTRVSYAQRNLHGAELEDYDYDGEGEGEREEDGEEEEEEEESYDDYEQS
SKPEGRRPSARTALSVRSRRKTKTRQICYASSDLELGIGDGPNLIDGETL
HKRRCISKGQMREFREAFRLFDKDGDGCITKEELGTVMRSLGQFARVEEL
QEMLQEIDVDGDGNVSFEEFVDILSNMTYEDKSGLSSADQEERELRDAFR
VFDKHNRGYITASDLRAVLQCLGEDLDEEDIEDMIKEVDVDGDGRIDFYE
FVHALGEPEDSQENDDEDVDTTSPLPTPKSAISLSYDASFLDH

BO13238.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11638-PA 387 CG11638-PA 1..387 1..387 2010 100 Plus
Cam-PD 149 CG8472-PD 5..143 206..352 380 49.7 Plus
Cam-PC 149 CG8472-PC 5..143 206..352 380 49.7 Plus
Cam-PE 149 CG8472-PE 5..143 206..352 380 49.7 Plus
Cam-PB 149 CG8472-PB 5..143 206..352 380 49.7 Plus
Cam-PD 149 CG8472-PD 59..148 190..276 183 44.4 Plus
Cam-PC 149 CG8472-PC 59..148 190..276 183 44.4 Plus
Cam-PE 149 CG8472-PE 59..148 190..276 183 44.4 Plus
Cam-PD 149 CG8472-PD 7..85 289..367 156 36.7 Plus
Cam-PC 149 CG8472-PC 7..85 289..367 156 36.7 Plus
Cam-PE 149 CG8472-PE 7..85 289..367 156 36.7 Plus