Clone BO13239 Report

Search the DGRC for BO13239

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptSod-RA
Protein status:BO13239.pep: validated full length
Sequenced Size:493

Clone Sequence Records

BO13239.3prime Sequence

491 bp (490 high quality bases) assembled on 2006-05-08

> BO13239.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGCAATGCCAATAACGCCGCACCCGA
TGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGTCCACCCTGG
CCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATGCT
GTCGGCGCCGAAGAGCGTAATCTTGGAGTCGGTGATGTTGACCTTGGTGG
GGCAGTCGCCGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGATTC
TCGTCGACGGGAGCGCCATGCTCCTTGCCATACGGATTGAAGTGCGGTCC
GGACGACATGCAGCCATTGGTGTTGTCACCGAACTCGTGCACGTGGAATC
CGTGCAGACCCTTGGCCAGGCCGCACACCTCACCGGAGACCTTCACGGGC
GTACCGCTGCTCTCCTGTTCGAAGAAAACCGTGCCCTTGGCATCGCCGTT
AATTACGCAGACAGCTTTAACCACCATGTCGACTGATAACT

BO13239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11793-PA 462 Sod-RA 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sod-RA 735 CG11793-RA 93..560 486..19 2310 99.6 Minus
Sod-RD 777 CG11793-RD 210..602 411..19 1965 100 Minus
Sod-RD 777 CG11793-RD 93..167 486..412 345 97.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11112456..11112850 19..413 1975 100 Plus
3L 28110227 3L 11113574..11113648 412..486 345 97.3 Plus
Blast to na_te.dros performed on 2015-02-10 16:53:08 has no hits.

BO13239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:42 Download gff for BO13239.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod-PA 1..462 15..477 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:48 Download gff for BO13239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11793-PA 1..462 15..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:40 Download gff for BO13239.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 87..565 13..491 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:10 Download gff for BO13239.3prime
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 87..565 13..491 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:10 Download gff for BO13239.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11112451..11112848 13..411 99 <- Plus
3L 11113574..11113650 412..491 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:40 Download gff for BO13239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11105551..11105948 13..411 99 <- Plus
arm_3L 11106674..11106750 412..491 93   Plus

BO13239.5prime Sequence

491 bp (490 high quality bases) assembled on 2006-05-08

> BO13239.5prime
GAAGTTATCACTCGACATGGTGGTTAAAGCTGTCTGCGTAATTAACGGCG
ATGCCAAGGGCACGGTTTTCTTCGAACAGGAGAGCAGCGGTACGCCCGTG
AAGGTCTCCGGTGAGGTGTGCGGCCTGGCCAAGGGTCTGCACGGATTCCA
CGTGCACGAGTTCGGTGACAACACCAATGGCTGCATGTCGTCCGGACCGC
ACTTCAATCCGTATGGCAAGGAGCATGGCGCTCCCGTCGACGAGAATCGT
CACCTGGGCGATCTGGGCAACATTGAGGCCACCGGCGACTGCCCCACCAA
GGTCAACATCACCGACTCCAAGATTACGCTCTTCGGCGCCGACAGCATCA
TCGGACGCACCGTTGTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGT
GGACACGAGCTGAGCAAGTCAACGGGCAACGCTGGTGCCCGCATCGGGTG
CGGCGTTATTGGCATTGCCAAGGTCGCAAGCTTTCTAGACC

BO13239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11793-PA 462 Sod-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sod-RA 735 CG11793-RA 93..560 8..475 2310 99.6 Plus
Sod-RD 777 CG11793-RD 210..602 83..475 1965 100 Plus
Sod-RD 777 CG11793-RD 93..167 8..82 345 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11112456..11112850 475..81 1975 100 Minus
3L 28110227 3L 11113574..11113648 82..8 345 97.3 Minus
Blast to na_te.dros performed on 2015-02-11 09:59:23 has no hits.

BO13239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:43 Download gff for BO13239.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod-PA 1..462 17..479 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:50 Download gff for BO13239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11793-PA 1..462 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:57 Download gff for BO13239.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 90..565 2..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:28 Download gff for BO13239.5prime
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 90..565 2..481 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:28 Download gff for BO13239.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11112451..11112848 83..481 99 <- Minus
3L 11113574..11113651 2..82 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:57 Download gff for BO13239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11105551..11105948 83..481 99 <- Minus
arm_3L 11106674..11106751 2..82 93   Minus

BO13239.complete Sequence

493 bp assembled on 2006-10-11

GenBank Submission: FJ632732

> BO13239.complete
GAAGTTATCAGTCGACATGGTGGTTAAAGCTGTCTGCGTAATTAACGGCG
ATGCCAAGGGCACGGTTTTCTTCGAACAGGAGAGCAGCGGTACGCCCGTG
AAGGTCTCCGGTGAGGTGTGCGGCCTGGCCAAGGGTCTGCACGGATTCCA
CGTGCACGAGTTCGGTGACAACACCAATGGCTGCATGTCGTCCGGACCGC
ACTTCAATCCGTATGGCAAGGAGCATGGCGCTCCCGTCGACGAGAATCGT
CACCTGGGCGATCTGGGCAACATTGAGGCCACCGGCGACTGCCCCACCAA
GGTCAACATCACCGACTCCAAGATTACGCTCTTCGGCGCCGACAGCATCA
TCGGACGCACCGTTGTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGT
GGACACGAGCTGAGCAAGTCAACGGGCAACGCTGGTGCCCGCATCGGGTG
CGGCGTTATTGGCATTGCCAAGGTCGCAAGCTTTCTAGACCAT

BO13239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Sod-RA 462 CG11793-PA 1..459 17..475 2295 100 Plus
Sod-RD 504 CG11793-PD 109..501 83..475 1965 100 Plus
Sod-RD 504 CG11793-PD 1..66 17..82 330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
Sod-RA 735 CG11793-RA 93..560 8..475 2310 99.6 Plus
Sod-RD 777 CG11793-RD 210..602 83..475 1965 100 Plus
Sod-RD 777 CG11793-RD 93..167 8..82 345 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11112456..11112850 475..81 1975 100 Minus
3L 28110227 3L 11113574..11113648 82..8 345 97.3 Minus
Blast to na_te.dros performed on 2014-11-27 01:31:12 has no hits.

BO13239.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:30 Download gff for BO13239.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 1..462 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:05 Download gff for BO13239.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 88..563 2..481 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:53 Download gff for BO13239.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 102..560 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:30 Download gff for BO13239.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 88..563 2..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:06 Download gff for BO13239.complete
Subject Subject Range Query Range Percent Splice Strand
Sod-RA 102..560 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:06 Download gff for BO13239.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11112454..11112848 83..477 99 <- Minus
3L 11113574..11113639 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:53 Download gff for BO13239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11105554..11105948 83..477 99 <- Minus
arm_3L 11106674..11106739 17..82 100   Minus

BO13239.pep Sequence

Translation from 16 to 493

> BO13239.pep
MVVKAVCVINGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFG
DNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITD
SKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI
AKVASFLDH

BO13239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sod-PA 153 CG11793-PA 1..153 1..153 818 100 Plus
Sod-PD 167 CG11793-PD 1..167 1..153 793 91.6 Plus
Sod3-PA 181 CG9027-PA 40..180 10..150 374 55.3 Plus
Sod3-PB 181 CG9027-PB 40..180 10..150 374 55.3 Plus
Sod3-PD 217 CG9027-PD 40..180 10..150 374 55.3 Plus