Clone Sequence Records
BO13239.3prime Sequence
491 bp (490 high quality bases) assembled on 2006-05-08
> BO13239.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGCAATGCCAATAACGCCGCACCCGA
TGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGTCCACCCTGG
CCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATGCT
GTCGGCGCCGAAGAGCGTAATCTTGGAGTCGGTGATGTTGACCTTGGTGG
GGCAGTCGCCGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGATTC
TCGTCGACGGGAGCGCCATGCTCCTTGCCATACGGATTGAAGTGCGGTCC
GGACGACATGCAGCCATTGGTGTTGTCACCGAACTCGTGCACGTGGAATC
CGTGCAGACCCTTGGCCAGGCCGCACACCTCACCGGAGACCTTCACGGGC
GTACCGCTGCTCTCCTGTTCGAAGAAAACCGTGCCCTTGGCATCGCCGTT
AATTACGCAGACAGCTTTAACCACCATGTCGACTGATAACT
BO13239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11793-PA | 462 | Sod-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod-RA | 735 | CG11793-RA | 93..560 | 486..19 | 2310 | 99.6 | Minus |
Sod-RD | 777 | CG11793-RD | 210..602 | 411..19 | 1965 | 100 | Minus |
Sod-RD | 777 | CG11793-RD | 93..167 | 486..412 | 345 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11112456..11112850 | 19..413 | 1975 | 100 | Plus |
3L | 28110227 | 3L | 11113574..11113648 | 412..486 | 345 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:53:08 has no hits.
BO13239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:42 Download gff for
BO13239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-PA | 1..462 | 15..477 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:48 Download gff for
BO13239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11793-PA | 1..462 | 15..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:18:40 Download gff for
BO13239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 87..565 | 13..491 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:10 Download gff for
BO13239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 87..565 | 13..491 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:10 Download gff for
BO13239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11112451..11112848 | 13..411 | 99 | <- | Plus |
3L | 11113574..11113650 | 412..491 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:18:40 Download gff for
BO13239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11105551..11105948 | 13..411 | 99 | <- | Plus |
arm_3L | 11106674..11106750 | 412..491 | 93 | | Plus |
BO13239.5prime Sequence
491 bp (490 high quality bases) assembled on 2006-05-08
> BO13239.5prime
GAAGTTATCACTCGACATGGTGGTTAAAGCTGTCTGCGTAATTAACGGCG
ATGCCAAGGGCACGGTTTTCTTCGAACAGGAGAGCAGCGGTACGCCCGTG
AAGGTCTCCGGTGAGGTGTGCGGCCTGGCCAAGGGTCTGCACGGATTCCA
CGTGCACGAGTTCGGTGACAACACCAATGGCTGCATGTCGTCCGGACCGC
ACTTCAATCCGTATGGCAAGGAGCATGGCGCTCCCGTCGACGAGAATCGT
CACCTGGGCGATCTGGGCAACATTGAGGCCACCGGCGACTGCCCCACCAA
GGTCAACATCACCGACTCCAAGATTACGCTCTTCGGCGCCGACAGCATCA
TCGGACGCACCGTTGTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGT
GGACACGAGCTGAGCAAGTCAACGGGCAACGCTGGTGCCCGCATCGGGTG
CGGCGTTATTGGCATTGCCAAGGTCGCAAGCTTTCTAGACC
BO13239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11793-PA | 462 | Sod-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod-RA | 735 | CG11793-RA | 93..560 | 8..475 | 2310 | 99.6 | Plus |
Sod-RD | 777 | CG11793-RD | 210..602 | 83..475 | 1965 | 100 | Plus |
Sod-RD | 777 | CG11793-RD | 93..167 | 8..82 | 345 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11112456..11112850 | 475..81 | 1975 | 100 | Minus |
3L | 28110227 | 3L | 11113574..11113648 | 82..8 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:59:23 has no hits.
BO13239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:43 Download gff for
BO13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-PA | 1..462 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:50 Download gff for
BO13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11793-PA | 1..462 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:57 Download gff for
BO13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 90..565 | 2..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:28 Download gff for
BO13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 90..565 | 2..481 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:28 Download gff for
BO13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11112451..11112848 | 83..481 | 99 | <- | Minus |
3L | 11113574..11113651 | 2..82 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:57 Download gff for
BO13239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11105551..11105948 | 83..481 | 99 | <- | Minus |
arm_3L | 11106674..11106751 | 2..82 | 93 | | Minus |
BO13239.complete Sequence
493 bp assembled on 2006-10-11
GenBank Submission: FJ632732
> BO13239.complete
GAAGTTATCAGTCGACATGGTGGTTAAAGCTGTCTGCGTAATTAACGGCG
ATGCCAAGGGCACGGTTTTCTTCGAACAGGAGAGCAGCGGTACGCCCGTG
AAGGTCTCCGGTGAGGTGTGCGGCCTGGCCAAGGGTCTGCACGGATTCCA
CGTGCACGAGTTCGGTGACAACACCAATGGCTGCATGTCGTCCGGACCGC
ACTTCAATCCGTATGGCAAGGAGCATGGCGCTCCCGTCGACGAGAATCGT
CACCTGGGCGATCTGGGCAACATTGAGGCCACCGGCGACTGCCCCACCAA
GGTCAACATCACCGACTCCAAGATTACGCTCTTCGGCGCCGACAGCATCA
TCGGACGCACCGTTGTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGT
GGACACGAGCTGAGCAAGTCAACGGGCAACGCTGGTGCCCGCATCGGGTG
CGGCGTTATTGGCATTGCCAAGGTCGCAAGCTTTCTAGACCAT
BO13239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod-RA | 462 | CG11793-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Sod-RD | 504 | CG11793-PD | 109..501 | 83..475 | 1965 | 100 | Plus |
Sod-RD | 504 | CG11793-PD | 1..66 | 17..82 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod-RA | 735 | CG11793-RA | 93..560 | 8..475 | 2310 | 99.6 | Plus |
Sod-RD | 777 | CG11793-RD | 210..602 | 83..475 | 1965 | 100 | Plus |
Sod-RD | 777 | CG11793-RD | 93..167 | 8..82 | 345 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11112456..11112850 | 475..81 | 1975 | 100 | Minus |
3L | 28110227 | 3L | 11113574..11113648 | 82..8 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:31:12 has no hits.
BO13239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:30 Download gff for
BO13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 1..462 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:05 Download gff for
BO13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 88..563 | 2..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:53 Download gff for
BO13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 102..560 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:30 Download gff for
BO13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 88..563 | 2..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:06 Download gff for
BO13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod-RA | 102..560 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:06 Download gff for
BO13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11112454..11112848 | 83..477 | 99 | <- | Minus |
3L | 11113574..11113639 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:53 Download gff for
BO13239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11105554..11105948 | 83..477 | 99 | <- | Minus |
arm_3L | 11106674..11106739 | 17..82 | 100 | | Minus |
BO13239.pep Sequence
Translation from 16 to 493
> BO13239.pep
MVVKAVCVINGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFG
DNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITD
SKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI
AKVASFLDH
BO13239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod-PA | 153 | CG11793-PA | 1..153 | 1..153 | 818 | 100 | Plus |
Sod-PD | 167 | CG11793-PD | 1..167 | 1..153 | 793 | 91.6 | Plus |
Sod3-PA | 181 | CG9027-PA | 40..180 | 10..150 | 374 | 55.3 | Plus |
Sod3-PB | 181 | CG9027-PB | 40..180 | 10..150 | 374 | 55.3 | Plus |
Sod3-PD | 217 | CG9027-PD | 40..180 | 10..150 | 374 | 55.3 | Plus |