Clone BO13240 Report

Search the DGRC for BO13240

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG34104-RA
Protein status:BO13240.pep: validated full length
Sequenced Size:1327

Clone Sequence Records

BO13240.5prime Sequence

768 bp (700 high quality bases) assembled on 2006-05-08

> BO13240.5prime
GAAGTTATCAGTCGACATGACTGTGAAATTGGCCAAGCTGTTTGGGGGCG
TGACAACGGGTGGCATTGAGATTCTGGACTCCCCGGGCAATCCGCAACAG
CATCAGGAGCAACAGCATCTGCAGCAACAGCAACAGCAACCACTAACAGC
ACCGCAACAACATATGCAACAGCAACCACCACCTCTGCCGCCACCAAATG
CGAATATGAAGAGTCTCAAGTATTATGAGCACCTGCAGGCCACCTACGAC
TGTCACGATCTGATGGATCATGACCAGGATCAGGATGACTACGAGGACAC
CTGTATGCAGCGCAACCATCCGTATAACAATTCGCAGAGACCGCTTTTGG
GCGACAGGCGACCGCAACTCACTGTGATGAGTGTGGGTAAAAAGGGTGCA
AAGTCTGGGATGCAAGTGCAGAATCTGCCACCATTGCCGCCACTAAGGAC
ATACATCTCACCATATGTGCAGCAACAGAAACGGGATAGCGCGAAGGGAT
TGCATGGATTCAATGACTTCGATGCCCTGTCCCAGCAATATAATCAACAC
CTTCAGAGTCCACACATTGGCTATCCCTATGGCAGTCCACCGTCGCCAAC
GGCTCAATCCAGTGATTTTTGCTTTGATCGCCAAACTGGTTTGGTCATGC
TGCCCGGCACCGCGGGTGGCCAGGTCAGCTCGAGCAGTTCGAGCAACTGC
AGCAGTTCGCACACCACGTCCACCTCCTCGCCCACTAGATATTATCCGGA
TAATCCCGGTCATGCCAC

BO13240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG34104-PA 1296 CG34104-RA 1..752 17..768 3760 100 Plus
CG34104-PB 1749 CG34104-RB 1..752 17..768 3760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
RhoU-RC 2649 CG34104-RC 473..1224 17..768 3760 100 Plus
RhoU-RB 2687 CG34104-RB 511..1262 17..768 3760 100 Plus
RhoU-RA 2228 CG34104-RA 511..1262 17..768 3760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10122197..10122948 17..768 3760 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:14 has no hits.

BO13240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:44 Download gff for BO13240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12094-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:51 Download gff for BO13240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34104-PB 1..752 17..768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:04:33 Download gff for BO13240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34104-RA 503..1262 9..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:28 Download gff for BO13240.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoU-RA 503..1262 9..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:28 Download gff for BO13240.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10122189..10122948 9..768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:04:33 Download gff for BO13240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10016222..10016981 9..768 99   Plus

BO13240.complete Sequence

1327 bp assembled on 2007-10-25

GenBank Submission: FJ632733

> BO13240.complete
GAAGTTATCAGTCGACATGACTGTGAAATTGGCCAAGCTGTTTGGGGGCG
TGACAACGGGTGGCATTGAGATTCTGGACTCCCCGGGCAATCCGCAACAG
CATCAGGAGCAACAGCATCTGCAGCAACAGCAACAGCAACCACTAACAGC
ACCGCAACAACATATGCAACAGCAACCACCACCTCTGCCGCCACCAAATG
CGAATATGAAGAGTCTCAAGTATTATGAGCACCTGCAGGCCACCTACGAC
TGTCACGATCTGATGGATCATGACCAGGATCAGGATGACTACGAGGACAC
CTGTATGCAGCGCAACCATCCGTATAACAATTCGCAGAGACCGCTTTTGG
GCGACAGGCGACCGCAACTCACTGTGATGAGTGTGGGTAAAAAGGGTGCA
AAGTCTGGGATGCAAGTGCAGAATCTGCCACCATTGCCGCCACTAAGGAC
ATACATCTCACCATATGTGCAGCAACAGAAACGGGATAGCGCGAAGGGAT
TGCATGGATTCAATGACTTCGATGCCCTGTCCCAGCAATATAATCAACAC
CTTCAGAGTCCACACATTGGCTATCCCTATGGCAGTCCACCGTCGCCAAC
GGCTCAATCCAGTGATTTTTGCTTTGATCGCCAAACTGGTTTGGTCATGC
TGCCCGGCACCGCGGGTGGCCAGGTCAGCTCGAGCAGTTCGAGCAACTGC
AGCAGTTCGCACACCACGTCCACCTCCTCGCCCACTAGATATTATCCGGA
TAATCCCGGTCATGCCACTGGTCTTTTTGCCTCCCGCTTCGAGGATGACT
TTTGCATGCGTCGTCCTGCCGTCCAGGAAAGTTCATCGCCCATCATTGCC
GGTGGTTGTGGAGGCGGAACAGGATCAGGATCAGGAGTGGCACTAGGAGT
AGGTGGAGGACCCTTCATCTTTGGCATTGCACCGGAGCAGCAGGTCACGG
ATTATGGAAGCAACCCACTGCCACCAACTCCTCCGCAGCTGAAACAACAA
TCTGTGATTAGTCGAAGCCCACTGCAACAATCGCTGAGCGACACAAGTGC
CGCCAGCAGTGGCAAGGGCTCCAAATTCTTATTGCGTAAGCGTAAATCAA
AGAAGACAACCGCAGCAGCCGCAGCAACAACGGAGGCCGCAACAACGGCC
AAAAAGGATGGCAAAAAGGCTATTGCCCAGCCACAGCCTTCGATCAAGTG
CGTCCTGGTGGGCGACGGAGCCGTGGGCAAGACGAATCTGATATTATCGT
ATCTGGAGAATCGCTTCAATCCGGAGCACATACCCACGGCATCAGACATT
TATAATGTGGCAAGCTTTCTAGACCAT

BO13240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
RhoU-RA 1296 CG34104-PA 1..1293 17..1309 6465 100 Plus
RhoU-RC 1749 CG34104-PC 1..1291 17..1307 6455 100 Plus
RhoU-RB 1749 CG34104-PB 1..1291 17..1307 6455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
RhoU-RA 2228 CG34104-RA 511..1803 17..1309 6465 100 Plus
RhoU-RC 2649 CG34104-RC 473..1763 17..1307 6455 100 Plus
RhoU-RB 2687 CG34104-RB 511..1801 17..1307 6455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10122197..10123204 17..1024 5040 100 Plus
X 23542271 X 10133971..10134116 1024..1169 730 100 Plus
X 23542271 X 10134405..10134543 1169..1307 695 100 Plus
Blast to na_te.dros performed 2014-11-27 20:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1034..1139 1086..1187 124 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1547..1605 1106..1167 123 69.4 Plus
roo 9092 roo DM_ROO 9092bp 1126..1178 1106..1158 112 67.9 Plus

BO13240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:48 Download gff for BO13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG34104-RA 1..1296 17..1313 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:47 Download gff for BO13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG34104-RA 497..1806 9..1321 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:55 Download gff for BO13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG34104-RA 511..1803 17..1311 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:56 Download gff for BO13240.complete
Subject Subject Range Query Range Percent Splice Strand
CG34104-RA 505..1797 17..1311 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:34 Download gff for BO13240.complete
Subject Subject Range Query Range Percent Splice Strand
RhoU-RA 511..1803 17..1311 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:34 Download gff for BO13240.complete
Subject Subject Range Query Range Percent Splice Strand
X 10122197..10123204 17..1024 100 -> Plus
X 10133972..10134116 1025..1169 100 -> Plus
X 10134406..10134544 1170..1311 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:55 Download gff for BO13240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10016230..10017237 17..1024 100 -> Plus
arm_X 10028005..10028149 1025..1169 100 -> Plus
arm_X 10028439..10028577 1170..1311 97   Plus

BO13240.pep Sequence

Translation from 16 to 1327

> BO13240.pep
MTVKLAKLFGGVTTGGIEILDSPGNPQQHQEQQHLQQQQQQPLTAPQQHM
QQQPPPLPPPNANMKSLKYYEHLQATYDCHDLMDHDQDQDDYEDTCMQRN
HPYNNSQRPLLGDRRPQLTVMSVGKKGAKSGMQVQNLPPLPPLRTYISPY
VQQQKRDSAKGLHGFNDFDALSQQYNQHLQSPHIGYPYGSPPSPTAQSSD
FCFDRQTGLVMLPGTAGGQVSSSSSSNCSSSHTTSTSSPTRYYPDNPGHA
TGLFASRFEDDFCMRRPAVQESSSPIIAGGCGGGTGSGSGVALGVGGGPF
IFGIAPEQQVTDYGSNPLPPTPPQLKQQSVISRSPLQQSLSDTSAASSGK
GSKFLLRKRKSKKTTAAAAATTEAATTAKKDGKKAIAQPQPSIKCVLVGD
GAVGKTNLILSYLENRFNPEHIPTASDIYNVASFLDH

BO13240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
RhoU-PA 431 CG34104-PA 1..431 1..431 2287 100 Plus
RhoU-PC 582 CG34104-PC 1..430 1..430 2283 100 Plus
RhoU-PB 582 CG34104-PB 1..430 1..430 2283 100 Plus