Clone BO13246 Report

Search the DGRC for BO13246

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptmspo-RA
Protein status:BO13246.pep: Imported from assembly
Sequenced Size:1837

Clone Sequence Records

BO13246.3prime Sequence

806 bp (733 high quality bases) assembled on 2006-05-08

> BO13246.3prime
ATGGTCTAGAAAGCTTGCTGTGTCGGAATCGGACCAATTAAAATAGGTCT
GCGACCCGTGACAGTTGCGCTCGGTGCCGCACCACTTGGACTGCTGGAGC
GCCGGGCACTGTCGTCCGCCCCTCTTGCCGTGCTTTATGACCTTGCGGTA
GCGATGCATCTCGCCGACGCCGCAACTTTTGCTGCAGGCCGTCCACTCGG
ACCAGTGGCTCACGCGGCAATCACGACGACGCTGCGCGGAGCTCCGCCTG
CGGGTGGCAGCACCACCGCCCACCGCACCACCGGCCTTGCCACCACCAAT
CGCGGATGGTGTCGGTTTGGAGGCGTTTGCATCGCTGGCATCTGCGGCAC
GCCGATAGCTGCTGGCGATGCTCTGCAGGATCGCATGCTTGTCGTTCTTC
GGCACCACACTGACCACCTGACCAGGTGCCGGCTGCAGGCTGTTGTTGCT
GCCATAGATGGGATTCATTTTGGCCAACAGCTGGGACCGAATGCGCTGCC
TCTCGTCGTCGTTCTGCTGCAACTGCTGCTGCTCCGTTTGTCGTTCCCGT
TCGATGCTGGCGGACAACTCGTTGTTCATCTCCACGTGATTGTGCTCCGC
GTCCAGGTGGGTCTGGGTCTGGACCGTCTCGTACTTGCGATCGTCCTCGG
CAATGTTAAACACCTCGCTCAGCTCGTACTCCTTCAGCTTGATAAACTGG
AACGTGGCGATGGGCGGCAATCGTTTGCTCTTCGGGATATAAAAGCTACC
CGCAGGATGTCCAGGATAACGCGAGGTGATCCGATAGATGACGCCCTGAG
GTTCTG

BO13246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10145-PA 1806 mspo-RA 1087..1803 735..19 3585 100 Minus
CG10145-PA 1806 mspo-RA 1016..1083 806..739 340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
mspo-RB 3131 CG10145-RB 1370..2157 806..19 3895 99.7 Minus
mspo-RA 2574 CG10145-RA 1370..2157 806..19 3895 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14672652..14673076 33..457 2125 100 Plus
2R 25286936 2R 14679943..14680174 458..689 1160 100 Plus
2R 25286936 2R 14683545..14683667 684..806 555 96.7 Plus
Blast to na_te.dros performed 2015-02-10 16:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2371 559..512 120 75 Minus

BO13246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:49 Download gff for BO13246.3prime
Subject Subject Range Query Range Percent Splice Strand
mspo-PA 1016..1806 16..806 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:58 Download gff for BO13246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10145-PA 1016..1806 16..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:03 Download gff for BO13246.3prime
Subject Subject Range Query Range Percent Splice Strand
mspo-RA 1370..2161 15..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:02 Download gff for BO13246.3prime
Subject Subject Range Query Range Percent Splice Strand
mspo-RA 1370..2161 15..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:02 Download gff for BO13246.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14672654..14673076 35..457 100 <- Plus
2R 14679943..14680172 458..687 100 <- Plus
2R 14683549..14683667 688..806 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:03 Download gff for BO13246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10560159..10560581 35..457 100 <- Plus
arm_2R 10567448..10567677 458..687 100 <- Plus
arm_2R 10571054..10571172 688..806 98   Plus

BO13246.5prime Sequence

778 bp (767 high quality bases) assembled on 2006-05-08

> BO13246.5prime
GAAGTTATCACTCGACATGGGAGCGACACCGAAAACAGACTTTCCGGCTC
ACTGGCTGCTGTGTATCCTTCTGGCTCTCGGCTCCTTATCCTCGAAAGCG
AATGCCGTTAGTGCTTATGGCGCCTCCTTCATTTCGAACCCATCCATATA
TGCATACAGTGTCGAAAATCAGCCGGATGAACGCGAGTCCAGGGACAACA
ACATCAAGTTTGCCGCTGAGCACGGCAATCTGAATTCCAATTCCAATCTG
AATCGTAATTACTACTACACCGATGATCCCAGTCCCGTTTCCAATCTGAA
TCCGACTGCCTCGCTGGCCACGCCTCCCGCCACCCAGCCCGCCCCGCAGA
CGGGCTGCACCCTGGACCGCCTGGCCGTCTACAAGGTCGTCTTGCACACC
TACTGGACCCGGGAGCTCTTCCCCAAGCACTATCCCGACTGGCGACCCAC
CGCCCAGTGGACCAAGACATTAGGTCGCACCCACAATGCCAACTATGCAC
TGTACCACATTGGACAACCGGCGACGGCGGCTGTCAAACAGTTTGCGGAA
TCGGGACGAACGGATCTGCTGGACAGCAATGCCGGCGAGCAGCAGCAGGT
CCAGATGCAGCTGCAGTCGCAGATGCAGGCGGGCAAATCCCCATCAGGTG
GGATCAGCAGCGGCACGACTAGTTTCAACGCCACAGCCGCATCCACAGCC
ACACCCACTGGTGGTAGTGGTGGCAGCGGTGGCAGCGGTGGCAGCGGTGG
CACTGGCACCACCACCGCCGAGCGCAAC

BO13246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10145-PA 1806 mspo-RA 1..760 17..776 3800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
mspo-RB 3131 CG10145-RB 351..1114 13..776 3805 99.9 Plus
mspo-RA 2574 CG10145-RA 351..1114 13..776 3805 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14712810..14713272 475..13 2300 99.8 Minus
2R 25286936 2R 14684305..14684609 776..472 1525 100 Minus
Xmm 1049845 Xmm 780128..780174 710..756 190 93.6 Plus
Xmm 1049845 Xmm 745118..745160 752..710 185 95.3 Minus
Xmm 1049845 Xmm 943923..943973 706..756 180 90.2 Plus
Blast to na_te.dros performed 2015-02-13 08:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 679..721 748..706 161 86 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 684..717 752..719 152 94.1 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 631..777 658..512 144 61.5 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 689..722 756..723 134 88.2 Minus

BO13246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:50 Download gff for BO13246.5prime
Subject Subject Range Query Range Percent Splice Strand
mspo-PA 1..762 17..778 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:00 Download gff for BO13246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10145-PA 1..762 17..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:16 Download gff for BO13246.5prime
Subject Subject Range Query Range Percent Splice Strand
mspo-RA 346..1116 5..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:22 Download gff for BO13246.5prime
Subject Subject Range Query Range Percent Splice Strand
mspo-RA 346..1116 5..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:22 Download gff for BO13246.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14684303..14684607 474..778 99 <- Minus
2R 14712812..14713277 5..473 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:16 Download gff for BO13246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10571808..10572112 474..778 99 <- Minus
arm_2R 10600317..10600782 5..473 98   Minus

BO13246.complete Sequence

1837 bp assembled on 2008-08-14

GenBank Submission: FJ632734

> BO13246.complete
GAAGTTATCACTCGACATGGGAGCGACACCGAAAACAGACTTTCCGGCTC
ACTGGCTGCTGTGTATCCTTCTGGCTCTCGGCTCCTTATCCTCGAAAGCG
AATGCCGTTAGTGCTTATGGCGCCTCCTTCATTTCGAACCCATCCATATA
TGCATACAGTGTCGAAAATCAGCCGGATGAACGCGAGTCCAGGGACAACA
ACATCAAGTTTGCCGCTGAGCACGGCAATCTGAATTCCAATTCCAATCTG
AATCGTAATTACTACTACACCGATGATCCCAGTCCCGTTTCCAATCTGAA
TCCGACTGCCTCGCTGGCCACGCCTCCCGCCACCCAGCCCGCCCCGCAGA
CGGGCTGCACCCTGGACCGCCTGGCCGTCTACAAGGTCGTCTTGCACACC
TACTGGACCCGGGAGCTCTTCCCCAAGCACTATCCCGACTGGCGACCCAC
CGCCCAGTGGACCAAGACATTAGGTCGCACCCACAATGCCAACTATGCAC
TGTACCACATTGGACAACCGGCGACGGCGGCTGTCAAACAGTTTGCGGAA
TCGGGACGAACGGATCTGCTGGACAGCAATGCCGGCGAGCAGCAGCAGGT
CCAGATGCAGCTGCAGTCGCAGATGCAGGCGGGCAAATCCCCATCAGGTG
GGATCAGCAGCGGCACGACTAGTTTCAACGCCACAGCCGCATCCACAGCC
ACACCCACTGGTGGTAGTGGTGGCAGCGGTGGCAGCGGTGGCAGCGGTGG
CACTGGCACCACCACCGCCGAGCGCAGCGTGTTCGATGAGTTCAGCATGC
CGGCGATTCCGATGGGCGCCGGACGCAGTGAGGCAAAAGTGTTTGTCGAC
AGCAATCACAGTCTGGTCTCGCTAATGACACGCATTGTTCCCTCGCCGGA
CTGGTTCATCGGCGTGGATTCGTTCGAGCTCTGCGTGGGTGGCTCCTGGA
TCGATACGGTGACCGTTGAGCTGGATCCTTTGGATGCGGGCACGGATAAT
GGCTTCACCTTCACGGCGCCCAACTGGCCAACAGAACCTCAGGGCGTCAT
CTATCGGATCACCTCGCGTTATCCTGGACATCCTGCGGGTAGCTTTTATT
ATCCGAAGAGCAAACGATTGCCGCCCATCGCCACGTTCCAGTTTATCAAG
CTGAAGGAGTACGAGCTGAGCGAGGTGTTTAACATTGCCGAGGACGATCG
CAAGTACGAGACGGTCCAGACCCAGACCCACCTGGACGCGGAGCACAATC
ACGTGGAGATGAACAACGAGTTGTCCGCCAGCATCGAACGGGAACGACAA
ACGGAGCAGCAGCAGTTGCAGCAGAACGACGACGAGAGGCAGCGCATTCG
GTCCCAGCTGTTGGCCAAAATGAATCCCATCTATGGCAGCAACAACAGCC
TGCAGCCGGCACCTGGTCAGGTGGTCAGTGTGGTGCCGAAGAACGACAAG
CATGCGATCCTGCAGAGCATCGCCAGCAGCTATCGGCGTGCCGCAGATGC
CAGCGATGCAAACGCCTCCAAACCGACACCATCCGCGATTGGTGGTGGCA
AGGCCGGTGGTGCGGTGGGCGGTGGTGCTGCCACCCGCAGGCGGAGCTCC
GCGCAGCGTCGTCGTGATTGCCGCGTGAGCCACTGGTCCGAGTGGACGGC
CTGCAGCAAAAGTTGCGGCGTCGGCGAGATGCATCGCTACCGCAAGGTCA
TAAAGCACGGCAAGAGGGGCGGACGACAGTGCCCGGCGCTCCAGCAGTCC
AAGTGGTGCGGCACCGAGCGCAACTGTCACGGGTCGCAGACCTATTTTAA
TTGGTCCGATTCCGACACAGCAAGCTTTCTAGACCAT

BO13246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
mspo-RB 1806 CG10145-PB 1..1803 17..1819 9015 100 Plus
mspo-RA 1806 CG10145-PA 1..1803 17..1819 9015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
mspo-RB 3131 CG10145-RB 351..2157 13..1819 9020 99.9 Plus
mspo-RA 2574 CG10145-RA 351..2157 13..1819 9020 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14712810..14713272 475..13 2300 99.8 Minus
2R 25286936 2R 14684153..14684609 928..472 2285 100 Minus
2R 25286936 2R 14672652..14673076 1805..1381 2125 100 Minus
2R 25286936 2R 14679943..14680174 1380..1149 1160 100 Minus
2R 25286936 2R 14683545..14683772 1154..927 1125 99.6 Minus
Xmm 1049845 Xmm 780128..780174 710..756 190 93.6 Plus
Xmm 1049845 Xmm 745118..745160 752..710 185 95.3 Minus
Blast to na_te.dros performed 2014-11-26 16:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 679..721 748..706 161 86 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 684..717 752..719 152 94.1 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 631..777 658..512 144 61.5 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 689..722 756..723 134 88.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2371 1279..1326 120 75 Plus

BO13246.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:57 Download gff for BO13246.complete
Subject Subject Range Query Range Percent Splice Strand
mspo-RA 345..2160 5..1823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:06 Download gff for BO13246.complete
Subject Subject Range Query Range Percent Splice Strand
mspo-RA 355..2157 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:29 Download gff for BO13246.complete
Subject Subject Range Query Range Percent Splice Strand
mspo-RA 354..2156 17..1821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:36 Download gff for BO13246.complete
Subject Subject Range Query Range Percent Splice Strand
mspo-RA 355..2157 17..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:36 Download gff for BO13246.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14672654..14673076 1381..1803 100 <- Minus
2R 14679943..14680172 1151..1380 100 <- Minus
2R 14683549..14683770 929..1150 100 <- Minus
2R 14684153..14684607 474..928 100 <- Minus
2R 14712812..14713268 17..473 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:06 Download gff for BO13246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10560159..10560581 1381..1803 100 <- Minus
arm_2R 10571658..10572112 474..928 100 <- Minus
arm_2R 10567448..10567677 1151..1380 100 <- Minus
arm_2R 10571054..10571275 929..1150 100 <- Minus
arm_2R 10600317..10600773 17..473 100   Minus

BO13246.pep Sequence

Translation from 16 to 1837

> BO13246.pep
MGATPKTDFPAHWLLCILLALGSLSSKANAVSAYGASFISNPSIYAYSVE
NQPDERESRDNNIKFAAEHGNLNSNSNLNRNYYYTDDPSPVSNLNPTASL
ATPPATQPAPQTGCTLDRLAVYKVVLHTYWTRELFPKHYPDWRPTAQWTK
TLGRTHNANYALYHIGQPATAAVKQFAESGRTDLLDSNAGEQQQVQMQLQ
SQMQAGKSPSGGISSGTTSFNATAASTATPTGGSGGSGGSGGSGGTGTTT
AERSVFDEFSMPAIPMGAGRSEAKVFVDSNHSLVSLMTRIVPSPDWFIGV
DSFELCVGGSWIDTVTVELDPLDAGTDNGFTFTAPNWPTEPQGVIYRITS
RYPGHPAGSFYYPKSKRLPPIATFQFIKLKEYELSEVFNIAEDDRKYETV
QTQTHLDAEHNHVEMNNELSASIERERQTEQQQLQQNDDERQRIRSQLLA
KMNPIYGSNNSLQPAPGQVVSVVPKNDKHAILQSIASSYRRAADASDANA
SKPTPSAIGGGKAGGAVGGGAATRRRSSAQRRRDCRVSHWSEWTACSKSC
GVGEMHRYRKVIKHGKRGGRQCPALQQSKWCGTERNCHGSQTYFNWSDSD
TASFLDH

BO13246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
mspo-PB 601 CG10145-PB 1..601 1..601 3196 100 Plus
mspo-PA 601 CG10145-PA 1..601 1..601 3196 100 Plus
fat-spondin-PA 763 CG6953-PA 285..551 271..573 279 27.4 Plus
CG17739-PA 873 CG17739-PA 172..393 106..383 249 25.6 Plus
CG30046-PC 839 CG30046-PC 281..564 262..590 246 25.3 Plus