Clone Sequence Records
BO13246.3prime Sequence
806 bp (733 high quality bases) assembled on 2006-05-08
> BO13246.3prime
ATGGTCTAGAAAGCTTGCTGTGTCGGAATCGGACCAATTAAAATAGGTCT
GCGACCCGTGACAGTTGCGCTCGGTGCCGCACCACTTGGACTGCTGGAGC
GCCGGGCACTGTCGTCCGCCCCTCTTGCCGTGCTTTATGACCTTGCGGTA
GCGATGCATCTCGCCGACGCCGCAACTTTTGCTGCAGGCCGTCCACTCGG
ACCAGTGGCTCACGCGGCAATCACGACGACGCTGCGCGGAGCTCCGCCTG
CGGGTGGCAGCACCACCGCCCACCGCACCACCGGCCTTGCCACCACCAAT
CGCGGATGGTGTCGGTTTGGAGGCGTTTGCATCGCTGGCATCTGCGGCAC
GCCGATAGCTGCTGGCGATGCTCTGCAGGATCGCATGCTTGTCGTTCTTC
GGCACCACACTGACCACCTGACCAGGTGCCGGCTGCAGGCTGTTGTTGCT
GCCATAGATGGGATTCATTTTGGCCAACAGCTGGGACCGAATGCGCTGCC
TCTCGTCGTCGTTCTGCTGCAACTGCTGCTGCTCCGTTTGTCGTTCCCGT
TCGATGCTGGCGGACAACTCGTTGTTCATCTCCACGTGATTGTGCTCCGC
GTCCAGGTGGGTCTGGGTCTGGACCGTCTCGTACTTGCGATCGTCCTCGG
CAATGTTAAACACCTCGCTCAGCTCGTACTCCTTCAGCTTGATAAACTGG
AACGTGGCGATGGGCGGCAATCGTTTGCTCTTCGGGATATAAAAGCTACC
CGCAGGATGTCCAGGATAACGCGAGGTGATCCGATAGATGACGCCCTGAG
GTTCTG
BO13246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10145-PA | 1806 | mspo-RA | 1087..1803 | 735..19 | 3585 | 100 | Minus |
CG10145-PA | 1806 | mspo-RA | 1016..1083 | 806..739 | 340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mspo-RB | 3131 | CG10145-RB | 1370..2157 | 806..19 | 3895 | 99.7 | Minus |
mspo-RA | 2574 | CG10145-RA | 1370..2157 | 806..19 | 3895 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14672652..14673076 | 33..457 | 2125 | 100 | Plus |
2R | 25286936 | 2R | 14679943..14680174 | 458..689 | 1160 | 100 | Plus |
2R | 25286936 | 2R | 14683545..14683667 | 684..806 | 555 | 96.7 | Plus |
Blast to na_te.dros performed 2015-02-10 16:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2371 | 559..512 | 120 | 75 | Minus |
BO13246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:49 Download gff for
BO13246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-PA | 1016..1806 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:42:58 Download gff for
BO13246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10145-PA | 1016..1806 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:19:03 Download gff for
BO13246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-RA | 1370..2161 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:02 Download gff for
BO13246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-RA | 1370..2161 | 15..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:02 Download gff for
BO13246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14672654..14673076 | 35..457 | 100 | <- | Plus |
2R | 14679943..14680172 | 458..687 | 100 | <- | Plus |
2R | 14683549..14683667 | 688..806 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:19:03 Download gff for
BO13246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10560159..10560581 | 35..457 | 100 | <- | Plus |
arm_2R | 10567448..10567677 | 458..687 | 100 | <- | Plus |
arm_2R | 10571054..10571172 | 688..806 | 98 | | Plus |
BO13246.5prime Sequence
778 bp (767 high quality bases) assembled on 2006-05-08
> BO13246.5prime
GAAGTTATCACTCGACATGGGAGCGACACCGAAAACAGACTTTCCGGCTC
ACTGGCTGCTGTGTATCCTTCTGGCTCTCGGCTCCTTATCCTCGAAAGCG
AATGCCGTTAGTGCTTATGGCGCCTCCTTCATTTCGAACCCATCCATATA
TGCATACAGTGTCGAAAATCAGCCGGATGAACGCGAGTCCAGGGACAACA
ACATCAAGTTTGCCGCTGAGCACGGCAATCTGAATTCCAATTCCAATCTG
AATCGTAATTACTACTACACCGATGATCCCAGTCCCGTTTCCAATCTGAA
TCCGACTGCCTCGCTGGCCACGCCTCCCGCCACCCAGCCCGCCCCGCAGA
CGGGCTGCACCCTGGACCGCCTGGCCGTCTACAAGGTCGTCTTGCACACC
TACTGGACCCGGGAGCTCTTCCCCAAGCACTATCCCGACTGGCGACCCAC
CGCCCAGTGGACCAAGACATTAGGTCGCACCCACAATGCCAACTATGCAC
TGTACCACATTGGACAACCGGCGACGGCGGCTGTCAAACAGTTTGCGGAA
TCGGGACGAACGGATCTGCTGGACAGCAATGCCGGCGAGCAGCAGCAGGT
CCAGATGCAGCTGCAGTCGCAGATGCAGGCGGGCAAATCCCCATCAGGTG
GGATCAGCAGCGGCACGACTAGTTTCAACGCCACAGCCGCATCCACAGCC
ACACCCACTGGTGGTAGTGGTGGCAGCGGTGGCAGCGGTGGCAGCGGTGG
CACTGGCACCACCACCGCCGAGCGCAAC
BO13246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10145-PA | 1806 | mspo-RA | 1..760 | 17..776 | 3800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mspo-RB | 3131 | CG10145-RB | 351..1114 | 13..776 | 3805 | 99.9 | Plus |
mspo-RA | 2574 | CG10145-RA | 351..1114 | 13..776 | 3805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14712810..14713272 | 475..13 | 2300 | 99.8 | Minus |
2R | 25286936 | 2R | 14684305..14684609 | 776..472 | 1525 | 100 | Minus |
Xmm | 1049845 | Xmm | 780128..780174 | 710..756 | 190 | 93.6 | Plus |
Xmm | 1049845 | Xmm | 745118..745160 | 752..710 | 185 | 95.3 | Minus |
Xmm | 1049845 | Xmm | 943923..943973 | 706..756 | 180 | 90.2 | Plus |
Blast to na_te.dros performed 2015-02-13 08:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 679..721 | 748..706 | 161 | 86 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 684..717 | 752..719 | 152 | 94.1 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..777 | 658..512 | 144 | 61.5 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 689..722 | 756..723 | 134 | 88.2 | Minus |
BO13246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:50 Download gff for
BO13246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-PA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:00 Download gff for
BO13246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10145-PA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:16 Download gff for
BO13246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-RA | 346..1116 | 5..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:22 Download gff for
BO13246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-RA | 346..1116 | 5..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:22 Download gff for
BO13246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14684303..14684607 | 474..778 | 99 | <- | Minus |
2R | 14712812..14713277 | 5..473 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:16 Download gff for
BO13246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10571808..10572112 | 474..778 | 99 | <- | Minus |
arm_2R | 10600317..10600782 | 5..473 | 98 | | Minus |
BO13246.complete Sequence
1837 bp assembled on 2008-08-14
GenBank Submission: FJ632734
> BO13246.complete
GAAGTTATCACTCGACATGGGAGCGACACCGAAAACAGACTTTCCGGCTC
ACTGGCTGCTGTGTATCCTTCTGGCTCTCGGCTCCTTATCCTCGAAAGCG
AATGCCGTTAGTGCTTATGGCGCCTCCTTCATTTCGAACCCATCCATATA
TGCATACAGTGTCGAAAATCAGCCGGATGAACGCGAGTCCAGGGACAACA
ACATCAAGTTTGCCGCTGAGCACGGCAATCTGAATTCCAATTCCAATCTG
AATCGTAATTACTACTACACCGATGATCCCAGTCCCGTTTCCAATCTGAA
TCCGACTGCCTCGCTGGCCACGCCTCCCGCCACCCAGCCCGCCCCGCAGA
CGGGCTGCACCCTGGACCGCCTGGCCGTCTACAAGGTCGTCTTGCACACC
TACTGGACCCGGGAGCTCTTCCCCAAGCACTATCCCGACTGGCGACCCAC
CGCCCAGTGGACCAAGACATTAGGTCGCACCCACAATGCCAACTATGCAC
TGTACCACATTGGACAACCGGCGACGGCGGCTGTCAAACAGTTTGCGGAA
TCGGGACGAACGGATCTGCTGGACAGCAATGCCGGCGAGCAGCAGCAGGT
CCAGATGCAGCTGCAGTCGCAGATGCAGGCGGGCAAATCCCCATCAGGTG
GGATCAGCAGCGGCACGACTAGTTTCAACGCCACAGCCGCATCCACAGCC
ACACCCACTGGTGGTAGTGGTGGCAGCGGTGGCAGCGGTGGCAGCGGTGG
CACTGGCACCACCACCGCCGAGCGCAGCGTGTTCGATGAGTTCAGCATGC
CGGCGATTCCGATGGGCGCCGGACGCAGTGAGGCAAAAGTGTTTGTCGAC
AGCAATCACAGTCTGGTCTCGCTAATGACACGCATTGTTCCCTCGCCGGA
CTGGTTCATCGGCGTGGATTCGTTCGAGCTCTGCGTGGGTGGCTCCTGGA
TCGATACGGTGACCGTTGAGCTGGATCCTTTGGATGCGGGCACGGATAAT
GGCTTCACCTTCACGGCGCCCAACTGGCCAACAGAACCTCAGGGCGTCAT
CTATCGGATCACCTCGCGTTATCCTGGACATCCTGCGGGTAGCTTTTATT
ATCCGAAGAGCAAACGATTGCCGCCCATCGCCACGTTCCAGTTTATCAAG
CTGAAGGAGTACGAGCTGAGCGAGGTGTTTAACATTGCCGAGGACGATCG
CAAGTACGAGACGGTCCAGACCCAGACCCACCTGGACGCGGAGCACAATC
ACGTGGAGATGAACAACGAGTTGTCCGCCAGCATCGAACGGGAACGACAA
ACGGAGCAGCAGCAGTTGCAGCAGAACGACGACGAGAGGCAGCGCATTCG
GTCCCAGCTGTTGGCCAAAATGAATCCCATCTATGGCAGCAACAACAGCC
TGCAGCCGGCACCTGGTCAGGTGGTCAGTGTGGTGCCGAAGAACGACAAG
CATGCGATCCTGCAGAGCATCGCCAGCAGCTATCGGCGTGCCGCAGATGC
CAGCGATGCAAACGCCTCCAAACCGACACCATCCGCGATTGGTGGTGGCA
AGGCCGGTGGTGCGGTGGGCGGTGGTGCTGCCACCCGCAGGCGGAGCTCC
GCGCAGCGTCGTCGTGATTGCCGCGTGAGCCACTGGTCCGAGTGGACGGC
CTGCAGCAAAAGTTGCGGCGTCGGCGAGATGCATCGCTACCGCAAGGTCA
TAAAGCACGGCAAGAGGGGCGGACGACAGTGCCCGGCGCTCCAGCAGTCC
AAGTGGTGCGGCACCGAGCGCAACTGTCACGGGTCGCAGACCTATTTTAA
TTGGTCCGATTCCGACACAGCAAGCTTTCTAGACCAT
BO13246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mspo-RB | 1806 | CG10145-PB | 1..1803 | 17..1819 | 9015 | 100 | Plus |
mspo-RA | 1806 | CG10145-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mspo-RB | 3131 | CG10145-RB | 351..2157 | 13..1819 | 9020 | 99.9 | Plus |
mspo-RA | 2574 | CG10145-RA | 351..2157 | 13..1819 | 9020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14712810..14713272 | 475..13 | 2300 | 99.8 | Minus |
2R | 25286936 | 2R | 14684153..14684609 | 928..472 | 2285 | 100 | Minus |
2R | 25286936 | 2R | 14672652..14673076 | 1805..1381 | 2125 | 100 | Minus |
2R | 25286936 | 2R | 14679943..14680174 | 1380..1149 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 14683545..14683772 | 1154..927 | 1125 | 99.6 | Minus |
Xmm | 1049845 | Xmm | 780128..780174 | 710..756 | 190 | 93.6 | Plus |
Xmm | 1049845 | Xmm | 745118..745160 | 752..710 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-26 16:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 679..721 | 748..706 | 161 | 86 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 684..717 | 752..719 | 152 | 94.1 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..777 | 658..512 | 144 | 61.5 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 689..722 | 756..723 | 134 | 88.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2371 | 1279..1326 | 120 | 75 | Plus |
BO13246.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:57 Download gff for
BO13246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-RA | 345..2160 | 5..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:06 Download gff for
BO13246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-RA | 355..2157 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:29 Download gff for
BO13246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-RA | 354..2156 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:36 Download gff for
BO13246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mspo-RA | 355..2157 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:36 Download gff for
BO13246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14672654..14673076 | 1381..1803 | 100 | <- | Minus |
2R | 14679943..14680172 | 1151..1380 | 100 | <- | Minus |
2R | 14683549..14683770 | 929..1150 | 100 | <- | Minus |
2R | 14684153..14684607 | 474..928 | 100 | <- | Minus |
2R | 14712812..14713268 | 17..473 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:06 Download gff for
BO13246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10560159..10560581 | 1381..1803 | 100 | <- | Minus |
arm_2R | 10571658..10572112 | 474..928 | 100 | <- | Minus |
arm_2R | 10567448..10567677 | 1151..1380 | 100 | <- | Minus |
arm_2R | 10571054..10571275 | 929..1150 | 100 | <- | Minus |
arm_2R | 10600317..10600773 | 17..473 | 100 | | Minus |
BO13246.pep Sequence
Translation from 16 to 1837
> BO13246.pep
MGATPKTDFPAHWLLCILLALGSLSSKANAVSAYGASFISNPSIYAYSVE
NQPDERESRDNNIKFAAEHGNLNSNSNLNRNYYYTDDPSPVSNLNPTASL
ATPPATQPAPQTGCTLDRLAVYKVVLHTYWTRELFPKHYPDWRPTAQWTK
TLGRTHNANYALYHIGQPATAAVKQFAESGRTDLLDSNAGEQQQVQMQLQ
SQMQAGKSPSGGISSGTTSFNATAASTATPTGGSGGSGGSGGSGGTGTTT
AERSVFDEFSMPAIPMGAGRSEAKVFVDSNHSLVSLMTRIVPSPDWFIGV
DSFELCVGGSWIDTVTVELDPLDAGTDNGFTFTAPNWPTEPQGVIYRITS
RYPGHPAGSFYYPKSKRLPPIATFQFIKLKEYELSEVFNIAEDDRKYETV
QTQTHLDAEHNHVEMNNELSASIERERQTEQQQLQQNDDERQRIRSQLLA
KMNPIYGSNNSLQPAPGQVVSVVPKNDKHAILQSIASSYRRAADASDANA
SKPTPSAIGGGKAGGAVGGGAATRRRSSAQRRRDCRVSHWSEWTACSKSC
GVGEMHRYRKVIKHGKRGGRQCPALQQSKWCGTERNCHGSQTYFNWSDSD
TASFLDH
BO13246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mspo-PB | 601 | CG10145-PB | 1..601 | 1..601 | 3196 | 100 | Plus |
mspo-PA | 601 | CG10145-PA | 1..601 | 1..601 | 3196 | 100 | Plus |
fat-spondin-PA | 763 | CG6953-PA | 285..551 | 271..573 | 279 | 27.4 | Plus |
CG17739-PA | 873 | CG17739-PA | 172..393 | 106..383 | 249 | 25.6 | Plus |
CG30046-PC | 839 | CG30046-PC | 281..564 | 262..590 | 246 | 25.3 | Plus |