Clone Sequence Records
BO13247.3prime Sequence
803 bp (669 high quality bases) assembled on 2006-05-08
> BO13247.3prime
ATGGTCTAGAAAGCTTGCAGCCTCGAGAAGCTGGCTATCCATATGCGATT
GGGATGCTTCTAATTCCTTCAATTTGGCCTGCGCCTTGGCCAACATTCGC
GCCTTCCATATTTCGTAGTCCTCCGGTGGGGGCTTATGTGCCTTTTTTGC
CTCATGACCCTTGATATTCTCATTCTGGTTCTCCTTAAGTTTACCCTCCA
TATCGGTGCTAGATGGTACTTTGCTCTCCTTGTGGTGCTTAGCTATCATG
CGTTCCCACTGCTGCTCGAGCAGTTGAAACTGGGAGGGTCGCAAATTACT
GAAGGGCATGAGCTTTGATTTCGAAACCTTCTTTTTGAGCAGGCGGCAGG
CCTGGAACACGGCCATGGTGGCGTACTGAGGATGGCTGGTGTCGGTACCC
ATGTCCTCGGTGGCCGCTACGCCCTTGAAGAGAGTCATTAGCTCTTCCGC
CTTGCGGGCAACTTCGTTGAGACCCAGCTGGACACAGATGTCATTCACGC
TAGCCAGTTTGTTTAGGTCCAGTAGCTTCTCGAACATCCGCTTGTTGTTG
AGGTATTGGCTCTTTCGCAATCCTGACAATTTCAGTGCCTGCTCCTTGTC
GAAAGCGATCCCAATCATGCAGGAAGCGAGATCCGCACACAGCACTATCT
TTCCGTACTCGTTGATCTGCAGAGGGACATTCGTGGAGCGCAGTTCCAGG
AGGCGTACTAGTTCGGTGGGTTTCTCTAGCACGTTTGGCTCCTCCCTTAG
GCCCATTTTCGTAATTAACTGTTCTATTAAGGTAGCCATGTCAACTGATA
ACT
BO13247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1584-PA | 774 | Orc6-RA | 5..771 | 785..19 | 3810 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-RA | 972 | CG1584-RA | 92..862 | 789..19 | 3825 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9845568..9846273 | 19..724 | 3515 | 99.9 | Plus |
| 2R | 25286936 | 2R | 9846329..9846394 | 724..789 | 315 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:54:04 has no hits.
BO13247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:51 Download gff for
BO13247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-PA | 1..774 | 18..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:01 Download gff for
BO13247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1584-PA | 1..774 | 18..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:53:45 Download gff for
BO13247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..870 | 10..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:59:30 Download gff for
BO13247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..870 | 10..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:59:30 Download gff for
BO13247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9845559..9846273 | 10..724 | 99 | <- | Plus |
| 2R | 9846330..9846394 | 725..789 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:53:45 Download gff for
BO13247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5733064..5733778 | 10..724 | 99 | <- | Plus |
| arm_2R | 5733835..5733899 | 725..789 | 98 | | Plus |
BO13247.5prime Sequence
803 bp (729 high quality bases) assembled on 2006-05-08
> BO13247.5prime
GAAGTTATCAGTCGACATGACTACCTTAATAGAACAGTTAATTACGAAAA
TGGGCCTAAGGGAGGAGCCAAACGTGCTAGAGAAAACCACCGAACTAGTA
CGCCTCCTGGAACTGCGCTCCACGAATGTCCCTCTGCAGATCAACGAGTA
CGGAAAGATAGTGCTGTGTGCGGATCTCGCTTCCTGCATGATTGGGATCG
CTTTCGACAAGGAGCAGGCACTGAAATTGTCAGGATTGCGAAAGAGCCAA
TACCTCAACAACAAGCGGATGTTCGAGAAGCTACTGGACCTAAACAAACT
GGCTAGCGTGAATGACATCTGTGTCCAGCTGGGTCTCAACGAAGTTGCCC
GCAAGGCGGAAGAGCTAATGACTCTCTTCAAGGGCGTAGCGGCCACCGAG
GACATGGGTACCGACACCAGCCATCCTCAGTACGCCACCATGGCCGTGTT
CCAGGCCTGCCGCCTGCTCAAAAAGAAGGTTTCGAAATCAAAGCTCATGC
CCTTCAGTAATTTGCGACCCTCCCAGTTTCAACTGCTCGAGCAGCAGTGG
GAACGCATGATAGCTAAGCACCACAAGGAGAGCAAAGTACCATCTAGCAC
CGATATGGAGGGTAAACTTAAGGAGAACCAGAATGAGAATATCAAGGGTC
ATGAGGCAAAAAAGGCACATAAGCCCCCACCGGAGGACTACGAAATATGG
AAGGCGCGAATGTTGGCCAAGGCGCAGGCCAAATTGAAGGAATTAGAAGC
ATCCCAATCGCATATGGATAGCCAGCTTCTCGAGGCTGCAAGCTTTCTAG
ACC
BO13247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1584-PA | 774 | Orc6-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-RA | 972 | CG1584-RA | 92..862 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9845568..9846273 | 787..82 | 3530 | 100 | Minus |
| 2R | 25286936 | 2R | 9846329..9846394 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:33:45 has no hits.
BO13247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:58:52 Download gff for
BO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-PA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:02 Download gff for
BO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1584-PA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:08 Download gff for
BO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..870 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:25 Download gff for
BO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..870 | 17..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:25 Download gff for
BO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9845559..9846273 | 82..796 | 99 | <- | Minus |
| 2R | 9846330..9846394 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:08 Download gff for
BO13247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5733064..5733778 | 82..796 | 99 | <- | Minus |
| arm_2R | 5733835..5733899 | 17..81 | 100 | | Minus |
BO13247.complete Sequence
805 bp assembled on 2007-10-17
GenBank Submission: FJ632735
> BO13247.complete
GAAGTTATCAGTCGACATGACTACCTTAATAGAACAGTTAATTACGAAAA
TGGGCCTAAGGGAGGAGCCAAACGTGCTAGAGAAAACCACCGAACTAGTA
CGCCTCCTGGAACTGCGCTCCACGAATGTCCCTCTGCAGATCAACGAGTA
CGGAAAGATAGTGCTGTGTGCGGATCTCGCTTCCTGCATGATTGGGATCG
CTTTCGACAAGGAGCAGGCACTGAAATTGTCAGGATTGCGAAAGAGCCAA
TACCTCAACAACAAGCGGATGTTCGAGAAGCTACTGGACCTAAACAAACT
GGCTAGCGTGAATGACATCTGTGTCCAGCTGGGTCTCAACGAAGTTGCCC
GCAAGGCGGAAGAGCTAATGACTCTCTTCAAGGGCGTAGCGGCCACCGAG
GACATGGGTACCGACACCAGCCATCCTCAGTACGCCACCATGGCCGTGTT
CCAGGCCTGCCGCCTGCTCAAAAAGAAGGTTTCGAAATCAAAGCTCATGC
CCTTCAGTAATTTGCGACCCTCCCAGTTTCAACTGCTCGAGCAGCAGTGG
GAACGCATGATAGCTAAGCACCACAAGGAGAGCAAAGTACCATCTAGCAC
CGATATGGAGGGTAAACTTAAGGAGAACCAGAATGAGAATATCAAGGGTC
ATGAGGCAAAAAAGGCACATAAGCCCCCACCGGAGGACTACGAAATATGG
AAGGCGCGAATGTTGGCCAAGGCGCAGGCCAAATTGAAGGAATTAGAAGC
ATCCCAATCGCATATGGATAGCCAGCTTCTCGAGGCTGCAAGCTTTCTAG
ACCAT
BO13247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-RA | 774 | CG1584-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-RA | 972 | CG1584-RA | 92..862 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9845568..9846273 | 787..82 | 3530 | 100 | Minus |
| 2R | 25286936 | 2R | 9846329..9846394 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:07:35 has no hits.
BO13247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:49 Download gff for
BO13247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:20 Download gff for
BO13247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 66..844 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:30 Download gff for
BO13247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..862 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:44 Download gff for
BO13247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 66..836 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:23 Download gff for
BO13247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..862 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:23 Download gff for
BO13247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9845566..9846273 | 82..789 | 99 | <- | Minus |
| 2R | 9846330..9846394 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:30 Download gff for
BO13247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5733071..5733778 | 82..789 | 99 | <- | Minus |
| arm_2R | 5733835..5733899 | 17..81 | 100 | | Minus |
BO13247.pep Sequence
Translation from 16 to 805
> BO13247.pep
MTTLIEQLITKMGLREEPNVLEKTTELVRLLELRSTNVPLQINEYGKIVL
CADLASCMIGIAFDKEQALKLSGLRKSQYLNNKRMFEKLLDLNKLASVND
ICVQLGLNEVARKAEELMTLFKGVAATEDMGTDTSHPQYATMAVFQACRL
LKKKVSKSKLMPFSNLRPSQFQLLEQQWERMIAKHHKESKVPSSTDMEGK
LKENQNENIKGHEAKKAHKPPPEDYEIWKARMLAKAQAKLKELEASQSHM
DSQLLEAASFLDH
BO13247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-PA | 257 | CG1584-PA | 1..257 | 1..257 | 1300 | 100 | Plus |
