Clone Sequence Records
BO13252.complete Sequence
1720 bp assembled on 2009-10-20
GenBank Submission: KX796134
> BO13252.complete
GAAGTTATCAGTCGACATGTTGATCTCGTGCAAATGCTCGAATTTCGTTG
CTTCGACTTCGAAATTGCAGCGCAGCAACAGCAGCAGCGGCGCAGGGGGC
CGCGTGGGCGGTGCAGAGGTCGCCAGCGGCGAGGTACCCACCGCGATCCT
CCTGTCGCAGGTGTTCCAGCAGAAGTATCCTCTGGACTTCGTCTTCTACA
GCCATATCATGGAGTTCTTTAAGCACGCCTATGGTCCCATTCCAGACCTC
ACCGTGGCTGTGATTAATCAGCGGGAGCTGTTGTATGGTCTCACCCTGGA
AGCCGCTGGCCAGAGTTGGCAGCTGAGCCTGTGCATCAACTGCAAGGAGG
TGCTATGCGCCAAGCGATTGACGGCGGGCGCCGGGGCCACGCCCACTCTC
TACCTCATCAACTGCACGCTGTTGACCAGCAGCGAGGAGCTGGCTCAACG
GAAGTCCAACAAAGCCTTCTCGGAGACCTTCGAGCTGCTGATCATGGATC
ACACAGGCAGTGACTCTGGATCCACTCGACCCACCAGTGGACTATCCAAC
TCCGCATCGAGTCTAAGCATCGGATCCCTGTCTTCGAATCCCACTGATGC
CAGGGTGCAGAGATTGAGAATGATACAAGCGCACCAGCAGGCGCGATTGC
AGGAGGAGATTGTGGAGACAAATGAGAGAATCGAGCGGTATACGCGCACT
CAGTTCCAGTTACTAAACAGTTTCCGGGAGAAATCGGATCAGGACTGCGC
GTTGCTATTCAAAGTTATTCGTGCGTTGCCCGAGCAGGCCTCGGAGCTAC
TCGATCGTGCCATGCTCCCTGCCCTTGATGTGGCGGCCAATCAGCCGCAG
AGTGCGACTGCCCGGCGCAGGAACACCATCAGCAGCCGGCGGGAGTTGAA
TGGTGGACCCACCACACCCACTACTACGTTGACACATCCGCCCAACTTCC
TATCGCTGAACCAGCAGCCGCAGCAACAGTTGCTGGCGCAGCAACAGCAG
CAACAGTTGCAGGCGCAACAGCAGCAGCAGCAGCAGGCCCCGCAGAGTGT
CTCGATGGCCAGGAAGATGTCGCACTTTGACACACCGCCCGCCACCCCAG
AAGCCACGCCCATGAGCGTGGGCAACAGCCCCACCTTCCGGCAGCAATCA
GCAGCCGGCGGTGCTGGTGGTCCACCCACCCAGACGTTGACCCCAAATGG
AGTGGGTCAGTCCAGTGTTAACGAAGATGCAGATGACTGCCTGTTCGATC
TGGAGGATGTGGATGCTCCGGTTCCGGTTCAGTCCGTGCCTGTGCCTAGC
TACACGCGTAGCCTGATCTACCAGCAGCAGCCTCAGCACAATCCCTTCCA
GCAGCTGAGCCAACAAAATGGCCTACGAAGTGTCCTAGATGACGAAGCTG
CGGATGAAGCTGAAGATGCTCTGGACCCGGATAGCTCCATTTCCATACCA
GTGCGAGGCGGAGGGCGTCCTAGCCATGCGCAGTTGATGAACTTCGCCCG
GAGTCTGCCCATCGAGATAGCAAACACCACGCTGGCCGAGAGAGCTGCTG
TGGCCAACAACAATAACTTCGGGCAGGGCTGCGAGGAGGGAATGGACAAC
ATCGACATAGCGGCAAGCATCCAAGCGCTGACCAGAAGTGTCCATGGCGA
GGCTGTTTTTGGGGACTTGCCACGGCCCCGCCTGCGATCTCAGATCGAGG
GCGCAAGCTTTCTAGACCAT
BO13252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| L-RA | 1689 | CG10109-PA | 1..1686 | 17..1702 | 8430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| L-RA | 2632 | CG10109-RA | 394..2080 | 16..1702 | 8435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14495152..14496340 | 227..1415 | 5945 | 100 | Plus |
| 2R | 25286936 | 2R | 14481580..14481791 | 16..227 | 1060 | 100 | Plus |
| 2R | 25286936 | 2R | 14496405..14496580 | 1414..1589 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 14496645..14496760 | 1587..1702 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:18:03 has no hits.
BO13252.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-20 10:49:30 Download gff for
BO13252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 384..2064 | 22..1704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:04 Download gff for
BO13252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 400..2080 | 22..1704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:34 Download gff for
BO13252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 400..2080 | 22..1704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:34 Download gff for
BO13252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14481586..14481790 | 22..226 | 100 | -> | Plus |
| 2R | 14495152..14496340 | 227..1415 | 100 | -> | Plus |
| 2R | 14496407..14496579 | 1416..1588 | 100 | -> | Plus |
| 2R | 14496647..14496760 | 1589..1704 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:04 Download gff for
BO13252.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10369091..10369295 | 22..226 | 100 | -> | Plus |
| arm_2R | 10382657..10383845 | 227..1415 | 100 | -> | Plus |
| arm_2R | 10383912..10384084 | 1416..1588 | 100 | -> | Plus |
| arm_2R | 10384152..10384265 | 1589..1704 | 98 | | Plus |
BO13252.3prime Sequence
680 bp (546 high quality bases) assembled on 2006-05-08
> BO13252.3prime
ATGGTCTAGAAAGCTTGCGCCCTCGATCTGAGATCGCAGGCGGGGCCGTG
GCAAGTCCCCAAAAACAGCCTCGCCATGGACACTTCTGGTCAGCGCTTGG
ATGCTTGCCGCTATGTCGATGTTGTCCATTCCCTCCTCGCAGCCCTGCCC
GAAGTTATTGTTGTTGGCCACAGCAGCTCTCTCGGCCAGCGTGGTGTTTG
CTATCTCGATGGGCAGACTCCGGGCGAAGTTCATCAACTGCGCATGGCTA
GGACGCCCTCCGCCTCGCACTGGTATGGAAATGGAGCTATCCGGGTCCAG
AGCATCTTCAGCTTCATCCGCAGCTTCGTCATCTAGGACACTTCGTAGGC
CATTTTGTTGGCTCAGCTGCTGGAAGGGATTGTGCTGAGGCTGCTGCTGG
TAGATCAGGCTACGCGTGTAGCTAGGCACAGGCACGGACTGAACCGGAAC
CGGAGCATCCACATCCTCCAGATCGAACAGGCAGTCATCTGCATCTTCGT
TAACACTGGACTGACCCACTCCATTTTGGGGTCAACGTCTGGGTGGGTGG
ACCACCAGCACCGCCGGCTGCTGATTGCTGCCGGAAGGTGGGGCTGTTGC
CCACGCTCATGGGCGTGGCTTCTGGGGTGGCGGGCGGTGTGTCAAAGTGC
GACTTCTTCCCTGGGCATTCAAACACTCTG
BO13252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10109-PA | 1689 | L-RA | 1179..1686 | 526..19 | 2540 | 100 | Minus |
| CG10109-PA | 1689 | L-RA | 1046..1181 | 660..525 | 655 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| L-RA | 2632 | CG10109-RA | 1421..2080 | 680..19 | 3185 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14495987..14496340 | 660..306 | 1710 | 99.4 | Minus |
| 2R | 25286936 | 2R | 14496405..14496580 | 307..132 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 14496645..14496760 | 134..19 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:39:53 has no hits.
BO13252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:59:00 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:14 Download gff for
BO13252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10109-PA | 1027..1689 | 18..680 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:22:01 Download gff for
BO13252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 1421..2085 | 12..680 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:46 Download gff for
BO13252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 1421..2085 | 12..680 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:46 Download gff for
BO13252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14495968..14496340 | 306..680 | 98 | -> | Minus |
| 2R | 14496407..14496579 | 133..305 | 100 | -> | Minus |
| 2R | 14496647..14496765 | 12..132 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:22:01 Download gff for
BO13252.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10383473..10383845 | 306..680 | 98 | -> | Minus |
| arm_2R | 10383912..10384084 | 133..305 | 100 | -> | Minus |
| arm_2R | 10384152..10384270 | 12..132 | 97 | | Minus |
BO13252.5prime Sequence
649 bp (636 high quality bases) assembled on 2006-05-08
> BO13252.5prime
GAAGTTATCAGTCGACATGTTGATCTCGTGCAAATGCTCGAATTTCGTTG
CTTCGACTTCGAAATTGCAGCGCAGCAACAGCAGCAGCGGCGCAGGGGGC
CGCGTGGGCGGTGCAGAGGTCGCCAGCGGCGAGGTACCCACCGCGATCCT
CCTGTCGCAGGTGTTCCAGCAGAAGTATCCTCTGGACTTCGTCTTCTACA
GCCATATCATGGAGTTCTTTAAGCACGCCTATGGTCCCATTCCAGACCTC
ACCGTGGCTGTGATTAATCAGCGGGAGCTGTTGTATGGTCTCACCCTGGA
AGCCGCTGGCCAGAGTTGGCAGCTGAGCCTGTGCATCAACTGCAAGGAGG
TGCTATGCGCCAAGCGATTGACGGCGGGCGCCGGGGCCACGCCCACTCTC
TACCTCATCAACTGCACGCTGTTGACCAGCAGCGAGGAGCTGGCTCAACG
GAAGTCCAACAAAGCCTTCTCGGAGACCTTCGAGCTGCTGATCATGGATC
ACACAGGCAGTGACTCTGGATCCACTCGACCCACCAGTGGACTATCCAAC
TCCGCATCGAGTCTAAGCATCGGATCCCTGTCTTCGAATCCCACTGATGC
CAGGGTGCAGAGATTGAGAATGATACAAGCGCACCAGCAGGCGCGATTG
BO13252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10109-PA | 1689 | L-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| L-RA | 2632 | CG10109-RA | 394..1027 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14495152..14495574 | 227..649 | 2115 | 100 | Plus |
| 2R | 25286936 | 2R | 14481580..14481791 | 16..227 | 1060 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 157..214 | 72..129 | 110 | 65.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9187..9244 | 72..129 | 110 | 65.5 | Plus |
BO13252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:59:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:15 Download gff for
BO13252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10109-PA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:51 Download gff for
BO13252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 394..1027 | 16..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:53 Download gff for
BO13252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| L-RA | 394..1027 | 16..649 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:53 Download gff for
BO13252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14481580..14481790 | 16..226 | 100 | -> | Plus |
| 2R | 14495152..14495574 | 227..649 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:51 Download gff for
BO13252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10369085..10369295 | 16..226 | 100 | -> | Plus |
| arm_2R | 10382657..10383079 | 227..649 | 100 | | Plus |
BO13252.pep Sequence
Translation from 16 to 1720
> BO13252.pep
MLISCKCSNFVASTSKLQRSNSSSGAGGRVGGAEVASGEVPTAILLSQVF
QQKYPLDFVFYSHIMEFFKHAYGPIPDLTVAVINQRELLYGLTLEAAGQS
WQLSLCINCKEVLCAKRLTAGAGATPTLYLINCTLLTSSEELAQRKSNKA
FSETFELLIMDHTGSDSGSTRPTSGLSNSASSLSIGSLSSNPTDARVQRL
RMIQAHQQARLQEEIVETNERIERYTRTQFQLLNSFREKSDQDCALLFKV
IRALPEQASELLDRAMLPALDVAANQPQSATARRRNTISSRRELNGGPTT
PTTTLTHPPNFLSLNQQPQQQLLAQQQQQQLQAQQQQQQQAPQSVSMARK
MSHFDTPPATPEATPMSVGNSPTFRQQSAAGGAGGPPTQTLTPNGVGQSS
VNEDADDCLFDLEDVDAPVPVQSVPVPSYTRSLIYQQQPQHNPFQQLSQQ
NGLRSVLDDEAADEAEDALDPDSSISIPVRGGGRPSHAQLMNFARSLPIE
IANTTLAERAAVANNNNFGQGCEEGMDNIDIAASIQALTRSVHGEAVFGD
LPRPRLRSQIEGASFLDH
BO13252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| L-PA | 562 | CG10109-PA | 1..562 | 1..562 | 2855 | 100 | Plus |
