Clone BO13255 Report

Search the DGRC for BO13255

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptArf102F-RA
Protein status:BO13255.pep: validated full length
Sequenced Size:574

Clone Sequence Records

BO13255.3prime Sequence

572 bp (571 high quality bases) assembled on 2006-05-08

> BO13255.3prime
ATGGTCTAGAAAGCTTGCTTTTTTAGCCAATTCAGCTGATAGCCAATCAA
GTCCTTCATAAAGACCGTGCCCTTGGGTAGCACATGTAGACTGAATAAAC
CAGTGGCGATTCCTTAATTGGTTAAGGCGCAACTTGTCCGTAAGCTCGGC
AGCTGTCATTGCATTCGGTAGGTCCTGTTTGTTGGCAAAAACCAAAAGTA
CCGCGTCCCTAAGTTCATCCTCCTGGAGCATGTTCTGTAGTTCTCTTTCA
GCTTCAGTTATACGATCGCGGTCGTTGGAATCCACTACAAATATAAGACC
CTGTGTATTTTGGAAATAGTGTCGCCACAACGGGCGAATTTTGTCTTGGC
CACCAACATCCCAAACGGTAAAACATATATTCTTATATTCCACAGTCTCG
ACATTGAAGCCTATGGTTGGTATGGTGGTTACAATTTCACCCAGCTTTAA
TTTGTACAGAATAGTCGTTTTTCCAGCAGCATCCAAGCCAACCATAAGAA
TACGCATTTGTTTTTTTCCAAACAAACGTGTCAAAAGACTAGATATTGTT
AGTCCCATGTCGACTGATAACT

BO13255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11027-PA 543 Arf102F-RA 1..540 558..19 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
Arf102F-RB 718 CG11027-RB 97..638 560..19 2710 100 Minus
Arf102F-RA 930 CG11027-RA 97..638 560..19 2710 100 Minus
Arf79F-RJ 1464 CG8385-RJ 405..767 495..133 525 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1124435..1124698 492..229 1320 100 Minus
4 1348131 4 1124767..1124893 229..103 635 100 Minus
4 1348131 4 1124950..1125033 102..19 420 100 Minus
4 1348131 4 1124263..1124331 560..492 345 100 Minus
3L 28110227 3L 22869666..22869777 302..413 305 84.8 Plus
Blast to na_te.dros performed on 2015-02-10 15:31:06 has no hits.

BO13255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:05 Download gff for BO13255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11027-PA 1..543 15..558 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:19 Download gff for BO13255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11027-PA 1..543 15..558 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:55:15 Download gff for BO13255.3prime
Subject Subject Range Query Range Percent Splice Strand
Arf102F-RA 97..641 15..560 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:15 Download gff for BO13255.3prime
Subject Subject Range Query Range Percent Splice Strand
Arf102F-RA 97..641 15..560 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:15 Download gff for BO13255.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1124950..1125036 15..102 97   Minus
4 1124263..1124331 492..560 100 -> Minus
4 1124436..1124698 229..491 100 -> Minus
4 1124768..1124893 103..228 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:55:15 Download gff for BO13255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1144889..1144957 492..560 100 -> Minus
arm_4 1145062..1145324 229..491 100 -> Minus
arm_4 1145394..1145519 103..228 100 -> Minus
arm_4 1145576..1145662 15..102 97   Minus

BO13255.5prime Sequence

723 bp (717 high quality bases) assembled on 2006-05-08

> BO13255.5prime
ATTAAAAGGACNNNNNNANNNNNANNTNANNNNNANGNNANCCCTTAAAA
GGGGANNAANAANANNNAGNNNNNNNGAANGNNGGANAGGAAAAAAANAA
AAGGGNAANNNAANGGTTCGCTAGGAGGNNGAAGGAAAAAAGAANANNNN
GNANAAANNAAAGNNGGGNGAAANNGNAANNANNANANNAANNANAGGNN
NNAAGGNAGAGAAGGNGGAANAAAAGAANANANGNNNNANNGNNAGGGAA
GNNGGNGGNAAAGAAAAAANNNGNNNGNNGNGGNGAAANNANNNAAAAAA
NANANAGGGNNAAANANANGNAGGGGAANNNAANGANAGNGATTTTTTTT
NTGAAGNTGAAAGAGAANTANAGAAGATGGTGAAGGAGGATGAANTTAGG
GANGNGGTANTTTTGGTTTTTGNNAANAAANAGGAANTAANGAATGGAAT
GANAGNTGNTGAGNTTAAGGANAAGTTGNGANTTAATNAATTAAGGAATN
GNNATTGGTTTATTNAGTNTATATGTGNTATNNAAGGGNANGGTTTTTAT
GAAGGAATTGATTGGATATNAGATGAATTGGATAAAAAAGNAAGTTTTAT
AGAANATTNGTTTGGNGNGNGGGNNTAGGTAAGTGGTNATAATNATAATT
ATAATNATAATNATAATAANAANTAGAATAGGAGATNNTGGTAATGATTA
GTTGTTGGATTTTNANNAATAAA

BO13255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:01:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Arf102F-RB 718 CG11027-RB 401..638 352..589 553 78.6 Plus
Arf102F-RA 930 CG11027-RA 401..638 352..589 553 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1124772..1124887 384..499 277 78.4 Plus
4 1348131 4 1124950..1125033 506..589 227 82.1 Plus
Blast to na_te.dros performed on 2015-02-13 02:14:41 has no hits.

BO13255.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-09-01 10:09:05 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 03:30:13 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-13 03:30:13 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-09-01 10:09:05 has no hits.

BO13255.complete Sequence

574 bp assembled on 2007-03-23

GenBank Submission: FJ632736

> BO13255.complete
GAAGTTATCAGTCGACATGGGACTAACAATATCTAGTCTTTTGACACGTT
TGTTTGGAAAAAAACAAATGCGTATTCTTATGGTTGGCTTGGATGCTGCT
GGAAAAACGACTATTCTGTACAAATTAAAGCTGGGTGAAATTGTAACCAC
CATACCAACCATAGGCTTCAATGTCGAGACTGTGGAATATAAGAATATAT
GTTTTACCGTTTGGGATGTTGGTGGCCAAGACAAAATTCGCCCGTTGTGG
CGACACTATTTCCAAAATACACAGGGTCTTATATTTGTAGTGGATTCCAA
CGACCGCGATCGTATAACTGAAGCTGAAAGAGAACTACAGAACATGCTCC
AGGAGGATGAACTTAGGGACGCGGTACTTTTGGTTTTTGCCAACAAACAG
GACCTACCGAATGCAATGACAGCTGCCGAGCTTACGGACAAGTTGCGCCT
TAACCAATTAAGGAATCGCCACTGGTTTATTCAGTCTACATGTGCTACCC
AAGGGCACGGTCTTTATGAAGGACTTGATTGGCTATCAGCTGAATTGGCT
AAAAAAGCAAGCTTTCTAGACCAT

BO13255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
Arf102F-RB 543 CG11027-PB 1..540 17..556 2700 100 Plus
Arf102F-RA 543 CG11027-PA 1..540 17..556 2700 100 Plus
Arf79F-RJ 549 CG8385-PJ 64..299 80..315 520 81.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Arf102F-RB 718 CG11027-RB 97..638 15..556 2710 100 Plus
Arf102F-RA 930 CG11027-RA 97..638 15..556 2710 100 Plus
Arf79F-RJ 1464 CG8385-RJ 405..640 80..315 520 81.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1124435..1124698 83..346 1320 100 Plus
4 1348131 4 1124767..1124893 346..472 635 100 Plus
4 1348131 4 1124950..1125033 473..556 420 100 Plus
4 1348131 4 1124263..1124331 15..83 345 100 Plus
3L 28110227 3L 22869666..22869777 273..162 305 84.8 Minus
Blast to na_te.dros performed on 2014-11-27 15:04:55 has no hits.

BO13255.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:59 Download gff for BO13255.complete
Subject Subject Range Query Range Percent Splice Strand
Arf102F-RA 1..543 17..560 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:28 Download gff for BO13255.complete
Subject Subject Range Query Range Percent Splice Strand
Arf102F-RA 90..634 15..560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:11 Download gff for BO13255.complete
Subject Subject Range Query Range Percent Splice Strand
Arf102F-RA 99..632 17..550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:59 Download gff for BO13255.complete
Subject Subject Range Query Range Percent Splice Strand
Arf102F-RA 90..634 15..560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:35 Download gff for BO13255.complete
Subject Subject Range Query Range Percent Splice Strand
Arf102F-RA 99..632 17..550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:35 Download gff for BO13255.complete
Subject Subject Range Query Range Percent Splice Strand
4 1124265..1124331 17..83 100 -> Plus
4 1124436..1124698 84..346 100 -> Plus
4 1124768..1124893 347..472 100 -> Plus
4 1124950..1125027 473..550 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:11 Download gff for BO13255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1144891..1144957 17..83 100 -> Plus
arm_4 1145062..1145324 84..346 100 -> Plus
arm_4 1145394..1145519 347..472 100 -> Plus
arm_4 1145576..1145653 473..550 100   Plus

BO13255.pep Sequence

Translation from 16 to 574

> BO13255.pep
MGLTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
FNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI
TEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRN
RHWFIQSTCATQGHGLYEGLDWLSAELAKKASFLDH

BO13255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
Arf102F-PB 180 CG11027-PB 1..180 1..180 932 100 Plus
Arf102F-PA 180 CG11027-PA 1..180 1..180 932 100 Plus
Arf79F-PJ 182 CG8385-PJ 1..177 1..177 767 83.1 Plus
Arf79F-PI 182 CG8385-PI 1..177 1..177 767 83.1 Plus
Arf79F-PH 182 CG8385-PH 1..177 1..177 767 83.1 Plus