Clone Sequence Records
BO13255.3prime Sequence
572 bp (571 high quality bases) assembled on 2006-05-08
> BO13255.3prime
ATGGTCTAGAAAGCTTGCTTTTTTAGCCAATTCAGCTGATAGCCAATCAA
GTCCTTCATAAAGACCGTGCCCTTGGGTAGCACATGTAGACTGAATAAAC
CAGTGGCGATTCCTTAATTGGTTAAGGCGCAACTTGTCCGTAAGCTCGGC
AGCTGTCATTGCATTCGGTAGGTCCTGTTTGTTGGCAAAAACCAAAAGTA
CCGCGTCCCTAAGTTCATCCTCCTGGAGCATGTTCTGTAGTTCTCTTTCA
GCTTCAGTTATACGATCGCGGTCGTTGGAATCCACTACAAATATAAGACC
CTGTGTATTTTGGAAATAGTGTCGCCACAACGGGCGAATTTTGTCTTGGC
CACCAACATCCCAAACGGTAAAACATATATTCTTATATTCCACAGTCTCG
ACATTGAAGCCTATGGTTGGTATGGTGGTTACAATTTCACCCAGCTTTAA
TTTGTACAGAATAGTCGTTTTTCCAGCAGCATCCAAGCCAACCATAAGAA
TACGCATTTGTTTTTTTCCAAACAAACGTGTCAAAAGACTAGATATTGTT
AGTCCCATGTCGACTGATAACT
BO13255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11027-PA | 543 | Arf102F-RA | 1..540 | 558..19 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf102F-RB | 718 | CG11027-RB | 97..638 | 560..19 | 2710 | 100 | Minus |
Arf102F-RA | 930 | CG11027-RA | 97..638 | 560..19 | 2710 | 100 | Minus |
Arf79F-RJ | 1464 | CG8385-RJ | 405..767 | 495..133 | 525 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1124435..1124698 | 492..229 | 1320 | 100 | Minus |
4 | 1348131 | 4 | 1124767..1124893 | 229..103 | 635 | 100 | Minus |
4 | 1348131 | 4 | 1124950..1125033 | 102..19 | 420 | 100 | Minus |
4 | 1348131 | 4 | 1124263..1124331 | 560..492 | 345 | 100 | Minus |
3L | 28110227 | 3L | 22869666..22869777 | 302..413 | 305 | 84.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:31:06 has no hits.
BO13255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:05 Download gff for
BO13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11027-PA | 1..543 | 15..558 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:19 Download gff for
BO13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11027-PA | 1..543 | 15..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:55:15 Download gff for
BO13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf102F-RA | 97..641 | 15..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:15 Download gff for
BO13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf102F-RA | 97..641 | 15..560 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:15 Download gff for
BO13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1124950..1125036 | 15..102 | 97 | | Minus |
4 | 1124263..1124331 | 492..560 | 100 | -> | Minus |
4 | 1124436..1124698 | 229..491 | 100 | -> | Minus |
4 | 1124768..1124893 | 103..228 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:55:15 Download gff for
BO13255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1144889..1144957 | 492..560 | 100 | -> | Minus |
arm_4 | 1145062..1145324 | 229..491 | 100 | -> | Minus |
arm_4 | 1145394..1145519 | 103..228 | 100 | -> | Minus |
arm_4 | 1145576..1145662 | 15..102 | 97 | | Minus |
BO13255.5prime Sequence
723 bp (717 high quality bases) assembled on 2006-05-08
> BO13255.5prime
ATTAAAAGGACNNNNNNANNNNNANNTNANNNNNANGNNANCCCTTAAAA
GGGGANNAANAANANNNAGNNNNNNNGAANGNNGGANAGGAAAAAAANAA
AAGGGNAANNNAANGGTTCGCTAGGAGGNNGAAGGAAAAAAGAANANNNN
GNANAAANNAAAGNNGGGNGAAANNGNAANNANNANANNAANNANAGGNN
NNAAGGNAGAGAAGGNGGAANAAAAGAANANANGNNNNANNGNNAGGGAA
GNNGGNGGNAAAGAAAAAANNNGNNNGNNGNGGNGAAANNANNNAAAAAA
NANANAGGGNNAAANANANGNAGGGGAANNNAANGANAGNGATTTTTTTT
NTGAAGNTGAAAGAGAANTANAGAAGATGGTGAAGGAGGATGAANTTAGG
GANGNGGTANTTTTGGTTTTTGNNAANAAANAGGAANTAANGAATGGAAT
GANAGNTGNTGAGNTTAAGGANAAGTTGNGANTTAATNAATTAAGGAATN
GNNATTGGTTTATTNAGTNTATATGTGNTATNNAAGGGNANGGTTTTTAT
GAAGGAATTGATTGGATATNAGATGAATTGGATAAAAAAGNAAGTTTTAT
AGAANATTNGTTTGGNGNGNGGGNNTAGGTAAGTGGTNATAATNATAATT
ATAATNATAATNATAATAANAANTAGAATAGGAGATNNTGGTAATGATTA
GTTGTTGGATTTTNANNAATAAA
BO13255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:01:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf102F-RB | 718 | CG11027-RB | 401..638 | 352..589 | 553 | 78.6 | Plus |
Arf102F-RA | 930 | CG11027-RA | 401..638 | 352..589 | 553 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1124772..1124887 | 384..499 | 277 | 78.4 | Plus |
4 | 1348131 | 4 | 1124950..1125033 | 506..589 | 227 | 82.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:14:41 has no hits.
BO13255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-09-01 10:09:05 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 03:30:13 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-13 03:30:13 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-09-01 10:09:05 has no hits.
BO13255.complete Sequence
574 bp assembled on 2007-03-23
GenBank Submission: FJ632736
> BO13255.complete
GAAGTTATCAGTCGACATGGGACTAACAATATCTAGTCTTTTGACACGTT
TGTTTGGAAAAAAACAAATGCGTATTCTTATGGTTGGCTTGGATGCTGCT
GGAAAAACGACTATTCTGTACAAATTAAAGCTGGGTGAAATTGTAACCAC
CATACCAACCATAGGCTTCAATGTCGAGACTGTGGAATATAAGAATATAT
GTTTTACCGTTTGGGATGTTGGTGGCCAAGACAAAATTCGCCCGTTGTGG
CGACACTATTTCCAAAATACACAGGGTCTTATATTTGTAGTGGATTCCAA
CGACCGCGATCGTATAACTGAAGCTGAAAGAGAACTACAGAACATGCTCC
AGGAGGATGAACTTAGGGACGCGGTACTTTTGGTTTTTGCCAACAAACAG
GACCTACCGAATGCAATGACAGCTGCCGAGCTTACGGACAAGTTGCGCCT
TAACCAATTAAGGAATCGCCACTGGTTTATTCAGTCTACATGTGCTACCC
AAGGGCACGGTCTTTATGAAGGACTTGATTGGCTATCAGCTGAATTGGCT
AAAAAAGCAAGCTTTCTAGACCAT
BO13255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf102F-RB | 543 | CG11027-PB | 1..540 | 17..556 | 2700 | 100 | Plus |
Arf102F-RA | 543 | CG11027-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Arf79F-RJ | 549 | CG8385-PJ | 64..299 | 80..315 | 520 | 81.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf102F-RB | 718 | CG11027-RB | 97..638 | 15..556 | 2710 | 100 | Plus |
Arf102F-RA | 930 | CG11027-RA | 97..638 | 15..556 | 2710 | 100 | Plus |
Arf79F-RJ | 1464 | CG8385-RJ | 405..640 | 80..315 | 520 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1124435..1124698 | 83..346 | 1320 | 100 | Plus |
4 | 1348131 | 4 | 1124767..1124893 | 346..472 | 635 | 100 | Plus |
4 | 1348131 | 4 | 1124950..1125033 | 473..556 | 420 | 100 | Plus |
4 | 1348131 | 4 | 1124263..1124331 | 15..83 | 345 | 100 | Plus |
3L | 28110227 | 3L | 22869666..22869777 | 273..162 | 305 | 84.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:04:55 has no hits.
BO13255.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:59 Download gff for
BO13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf102F-RA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:28 Download gff for
BO13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf102F-RA | 90..634 | 15..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:11 Download gff for
BO13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf102F-RA | 99..632 | 17..550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:59 Download gff for
BO13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf102F-RA | 90..634 | 15..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:35 Download gff for
BO13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf102F-RA | 99..632 | 17..550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:35 Download gff for
BO13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1124265..1124331 | 17..83 | 100 | -> | Plus |
4 | 1124436..1124698 | 84..346 | 100 | -> | Plus |
4 | 1124768..1124893 | 347..472 | 100 | -> | Plus |
4 | 1124950..1125027 | 473..550 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:11 Download gff for
BO13255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1144891..1144957 | 17..83 | 100 | -> | Plus |
arm_4 | 1145062..1145324 | 84..346 | 100 | -> | Plus |
arm_4 | 1145394..1145519 | 347..472 | 100 | -> | Plus |
arm_4 | 1145576..1145653 | 473..550 | 100 | | Plus |
BO13255.pep Sequence
Translation from 16 to 574
> BO13255.pep
MGLTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
FNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRI
TEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRN
RHWFIQSTCATQGHGLYEGLDWLSAELAKKASFLDH
BO13255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf102F-PB | 180 | CG11027-PB | 1..180 | 1..180 | 932 | 100 | Plus |
Arf102F-PA | 180 | CG11027-PA | 1..180 | 1..180 | 932 | 100 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 1..177 | 1..177 | 767 | 83.1 | Plus |
Arf79F-PI | 182 | CG8385-PI | 1..177 | 1..177 | 767 | 83.1 | Plus |
Arf79F-PH | 182 | CG8385-PH | 1..177 | 1..177 | 767 | 83.1 | Plus |