Clone BO13257 Report

Search the DGRC for BO13257

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptMst85C-RA
Protein status:BO13257.pep: Imported from assembly
Sequenced Size:760

Clone Sequence Records

BO13257.3prime Sequence

710 bp (647 high quality bases) assembled on 2006-05-08

> BO13257.3prime
ATGGTCTAGAAAGCTTGCCAGGTCTTCGTCCATGTGCTCCTGCTCAGACT
TGTTAAGATTCACGCTGCACGTGTTGTTGTTCTCGAAGAACTCCAGATCG
TCATCGTAGTCATCCAGCTCCTGGACCGCCGGTGCCGCAGCCATGGGTGC
CACTATTTGGGGCGACACCATCTTGACTTCCGGCATCGGCATCGGCATCT
GCAGTGGCGAAGGCTGCCAAGGGACCAAGGCGGTGCAGGGACGTGGTATG
GACTTGATTAGCCACTCCGGTGGTATTACAGGTGGAGCGGAACCGGGACC
CGATCCTGGCTTAAGGCCATCACAAATTACGATGCGATTGGCATTGCGCA
GTTTCTGCTCCAGTTCCATGGCCGCCATTTGATAGGCGGGATTGGGGTGG
TGGGTCTTCCCGGTGCTGGTGGATGGTATATCATCCGTGGCCAGTCCGCC
CGTAACGCTGGCCACGCTGTTGTTGTTGCTAACAACGGCCGTGGCGGCGA
CATTGATCTTCGGATCCAGCGATAGACCGCTGAAATGCTGGGTGATCCTC
TCCTCGGTTATAAGCATTTTGGGTGGTAGCACTGCCGGTGCCGGCTGCTC
GGATTTTCGCTTATGCTGCCATTTTACCAGATCATTCTCCACCGAATTGC
CGAAGGTGCTGCAGCTCCCGAATCCGAAGTCCATGATACCGCCCCGGAGG
AGGCGCATTG

BO13257.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11993-PA 729 Mst85C-RA 51..726 694..19 3380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mst85C-RB 1330 CG11993-RB 154..844 710..19 3435 99.9 Minus
Mst85C-RA 1352 CG11993-RA 176..866 710..19 3435 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9051187..9051745 577..19 2795 100 Minus
3R 32079331 3R 9050996..9051127 710..578 615 99.2 Minus
Blast to na_te.dros performed on 2015-02-10 15:29:01 has no hits.

BO13257.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:08 Download gff for BO13257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11993-PA 36..729 18..710 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:24 Download gff for BO13257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11993-PA 36..729 18..710 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:55:09 Download gff for BO13257.3prime
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 176..870 13..710 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:57 Download gff for BO13257.3prime
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 176..870 13..710 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:57 Download gff for BO13257.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9050996..9051127 578..710 99 -> Minus
3R 9051187..9051749 13..577 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:55:09 Download gff for BO13257.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4876718..4876849 578..710 99 -> Minus
arm_3R 4876909..4877471 13..577 99   Minus

BO13257.5prime Sequence

758 bp (711 high quality bases) assembled on 2006-05-08

> BO13257.5prime
GAAGTTATCCCTCGACATGAAGCCCCAGAGCAAGCGGAAATCATTCCCAT
TCAATGCGCCTCCTCCGGGCGGTATCATGGACTTCGGATTCGGGAGCTGC
AGCACCTTCGGCAATTCGGTGGAGAATGATCTGGTAAAATGGCAGCATAA
GCGAAAATCCGAGCAGCCGGCACCGGCAGTGCTACCACCCAAAATGCTTA
TAACCGAGGAGAGGATCACCCAGCATTTCAGCGGTCTATCGCTGGATCCG
AAGATCAATGTCGCCGCCACGGCCGTTGTTAGCAACAACAACAGCGTGGC
CAGCGTTACGGGCGGACTGGCCACGGATGATATACCATCCACCAGCACCG
GGAAGACCCACCACCCCAATCCCGCCTATCAAATGGCGGCCATGGAACTG
GAGCAGAAACTGCGCAATGCCAATCGCATCGTAATTTGTGATGGCCTTAA
GCCAGGATCGGGTCCCGGTTCCGCTCCACCTGTAATACCACCGGAGTGGC
TAATCAAGTCCATACCACGTCCCTGCACCGCCTTGGTCCCTTGGCAGCCT
TCGCCACTGCAGATGCCGATGCCGATGCCGGAAGTCAAGATGGTGTCGCC
CCAAATAGTGGCACCCATGGCTGCGGCACCGGCGGTCCAGGAGCTGGATG
ACTACGATGACGATCTGGAGTTCTTCGAGAACAACAACACGTGCAGCGTG
AATCTTAACAAGTCTGAGCAGGAGCACATGGACGAAGACCTGGCAAGCTT
TCTAGACC

BO13257.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11993-PA 729 Mst85C-RA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mst85C-RB 1330 CG11993-RB 119..844 17..742 3630 100 Plus
Mst85C-RA 1352 CG11993-RA 141..866 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9051187..9051745 184..742 2795 100 Plus
3R 32079331 3R 9050961..9051127 17..183 835 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:32:28 has no hits.

BO13257.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:09 Download gff for BO13257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11993-PA 1..729 17..743 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:25 Download gff for BO13257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11993-PA 1..729 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:59 Download gff for BO13257.5prime
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 139..870 13..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:41 Download gff for BO13257.5prime
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 139..870 13..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:41 Download gff for BO13257.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9050959..9051127 13..183 98 -> Plus
3R 9051187..9051749 184..748 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:59 Download gff for BO13257.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4876681..4876849 13..183 98 -> Plus
arm_3R 4876909..4877471 184..748 99   Plus

BO13257.complete Sequence

760 bp assembled on 2008-08-14

GenBank Submission: FJ632737

> BO13257.complete
GAAGTTATCCCTCGACATGAAGCCCCAGAGCAAGCGGAAATCATTCCCAT
TCAATGCGCCTCCTCCGGGCGGTATCATGGACTTCGGATTCGGGAGCTGC
AGCACCTTCGGCAATTCGGTGGAGAATGATCTGGTAAAATGGCAGCATAA
GCGAAAATCCGAGCAGCCGGCACCGGCAGTGCTACCACCCAAAATGCTTA
TAACCGAGGAGAGGATCACCCAGCATTTCAGCGGTCTATCGCTGGATCCG
AAGATCAATGTCGCCGCCACGGCCGTTGTTAGCAACAACAACAGCGTGGC
CAGCGTTACGGGCGGACTGGCCACGGATGATATACCATCCACCAGCACCG
GGAAGACCCACCACCCCAATCCCGCCTATCAAATGGCGGCCATGGAACTG
GAGCAGAAACTGCGCAATGCCAATCGCATCGTAATTTGTGATGGCCTTAA
GCCAGGATCGGGTCCCGGTTCCGCTCCACCTGTAATACCACCGGAGTGGC
TAATCAAGTCCATACCACGTCCCTGCACCGCCTTGGTCCCTTGGCAGCCT
TCGCCACTGCAGATGCCGATGCCGATGCCGGAAGTCAAGATGGTGTCGCC
CCAAATAGTGGCACCCATGGCTGCGGCACCGGCGGTCCAGGAGCTGGATG
ACTACGATGACGATCTGGAGTTCTTCGAGAACAACAACACGTGCAGCGTG
AATCTTAACAAGTCTGAGCAGGAGCACATGGACGAAGACCTGGCAAGCTT
TCTAGACCAT

BO13257.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mst85C-RB 729 CG11993-PB 1..726 17..742 3630 100 Plus
Mst85C-RA 729 CG11993-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mst85C-RB 1330 CG11993-RB 119..844 17..742 3630 100 Plus
Mst85C-RA 1352 CG11993-RA 141..866 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9051187..9051745 184..742 2795 100 Plus
3R 32079331 3R 9050961..9051127 17..183 835 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:57:07 has no hits.

BO13257.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:05 Download gff for BO13257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 136..867 13..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:27 Download gff for BO13257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 141..866 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:33 Download gff for BO13257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 138..863 17..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:39 Download gff for BO13257.complete
Subject Subject Range Query Range Percent Splice Strand
Mst85C-RA 141..866 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:39 Download gff for BO13257.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9050961..9051127 17..183 100 -> Plus
3R 9051187..9051745 184..744 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:27 Download gff for BO13257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4876683..4876849 17..183 100 -> Plus
arm_3R 4876909..4877467 184..744 99   Plus

BO13257.pep Sequence

Translation from 16 to 760

> BO13257.pep
MKPQSKRKSFPFNAPPPGGIMDFGFGSCSTFGNSVENDLVKWQHKRKSEQ
PAPAVLPPKMLITEERITQHFSGLSLDPKINVAATAVVSNNNSVASVTGG
LATDDIPSTSTGKTHHPNPAYQMAAMELEQKLRNANRIVICDGLKPGSGP
GSAPPVIPPEWLIKSIPRPCTALVPWQPSPLQMPMPMPEVKMVSPQIVAP
MAAAPAVQELDDYDDDLEFFENNNTCSVNLNKSEQEHMDEDLASFLDH

BO13257.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
Mst85C-PB 242 CG11993-PB 1..242 1..242 1290 100 Plus
Mst85C-PA 242 CG11993-PA 1..242 1..242 1290 100 Plus