Clone Sequence Records
BO13257.3prime Sequence
710 bp (647 high quality bases) assembled on 2006-05-08
> BO13257.3prime
ATGGTCTAGAAAGCTTGCCAGGTCTTCGTCCATGTGCTCCTGCTCAGACT
TGTTAAGATTCACGCTGCACGTGTTGTTGTTCTCGAAGAACTCCAGATCG
TCATCGTAGTCATCCAGCTCCTGGACCGCCGGTGCCGCAGCCATGGGTGC
CACTATTTGGGGCGACACCATCTTGACTTCCGGCATCGGCATCGGCATCT
GCAGTGGCGAAGGCTGCCAAGGGACCAAGGCGGTGCAGGGACGTGGTATG
GACTTGATTAGCCACTCCGGTGGTATTACAGGTGGAGCGGAACCGGGACC
CGATCCTGGCTTAAGGCCATCACAAATTACGATGCGATTGGCATTGCGCA
GTTTCTGCTCCAGTTCCATGGCCGCCATTTGATAGGCGGGATTGGGGTGG
TGGGTCTTCCCGGTGCTGGTGGATGGTATATCATCCGTGGCCAGTCCGCC
CGTAACGCTGGCCACGCTGTTGTTGTTGCTAACAACGGCCGTGGCGGCGA
CATTGATCTTCGGATCCAGCGATAGACCGCTGAAATGCTGGGTGATCCTC
TCCTCGGTTATAAGCATTTTGGGTGGTAGCACTGCCGGTGCCGGCTGCTC
GGATTTTCGCTTATGCTGCCATTTTACCAGATCATTCTCCACCGAATTGC
CGAAGGTGCTGCAGCTCCCGAATCCGAAGTCCATGATACCGCCCCGGAGG
AGGCGCATTG
BO13257.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11993-PA | 729 | Mst85C-RA | 51..726 | 694..19 | 3380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst85C-RB | 1330 | CG11993-RB | 154..844 | 710..19 | 3435 | 99.9 | Minus |
Mst85C-RA | 1352 | CG11993-RA | 176..866 | 710..19 | 3435 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9051187..9051745 | 577..19 | 2795 | 100 | Minus |
3R | 32079331 | 3R | 9050996..9051127 | 710..578 | 615 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:29:01 has no hits.
BO13257.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:08 Download gff for
BO13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11993-PA | 36..729 | 18..710 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:24 Download gff for
BO13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11993-PA | 36..729 | 18..710 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:55:09 Download gff for
BO13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst85C-RA | 176..870 | 13..710 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:57 Download gff for
BO13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst85C-RA | 176..870 | 13..710 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:57 Download gff for
BO13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9050996..9051127 | 578..710 | 99 | -> | Minus |
3R | 9051187..9051749 | 13..577 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:55:09 Download gff for
BO13257.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4876718..4876849 | 578..710 | 99 | -> | Minus |
arm_3R | 4876909..4877471 | 13..577 | 99 | | Minus |
BO13257.5prime Sequence
758 bp (711 high quality bases) assembled on 2006-05-08
> BO13257.5prime
GAAGTTATCCCTCGACATGAAGCCCCAGAGCAAGCGGAAATCATTCCCAT
TCAATGCGCCTCCTCCGGGCGGTATCATGGACTTCGGATTCGGGAGCTGC
AGCACCTTCGGCAATTCGGTGGAGAATGATCTGGTAAAATGGCAGCATAA
GCGAAAATCCGAGCAGCCGGCACCGGCAGTGCTACCACCCAAAATGCTTA
TAACCGAGGAGAGGATCACCCAGCATTTCAGCGGTCTATCGCTGGATCCG
AAGATCAATGTCGCCGCCACGGCCGTTGTTAGCAACAACAACAGCGTGGC
CAGCGTTACGGGCGGACTGGCCACGGATGATATACCATCCACCAGCACCG
GGAAGACCCACCACCCCAATCCCGCCTATCAAATGGCGGCCATGGAACTG
GAGCAGAAACTGCGCAATGCCAATCGCATCGTAATTTGTGATGGCCTTAA
GCCAGGATCGGGTCCCGGTTCCGCTCCACCTGTAATACCACCGGAGTGGC
TAATCAAGTCCATACCACGTCCCTGCACCGCCTTGGTCCCTTGGCAGCCT
TCGCCACTGCAGATGCCGATGCCGATGCCGGAAGTCAAGATGGTGTCGCC
CCAAATAGTGGCACCCATGGCTGCGGCACCGGCGGTCCAGGAGCTGGATG
ACTACGATGACGATCTGGAGTTCTTCGAGAACAACAACACGTGCAGCGTG
AATCTTAACAAGTCTGAGCAGGAGCACATGGACGAAGACCTGGCAAGCTT
TCTAGACC
BO13257.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11993-PA | 729 | Mst85C-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst85C-RB | 1330 | CG11993-RB | 119..844 | 17..742 | 3630 | 100 | Plus |
Mst85C-RA | 1352 | CG11993-RA | 141..866 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9051187..9051745 | 184..742 | 2795 | 100 | Plus |
3R | 32079331 | 3R | 9050961..9051127 | 17..183 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:32:28 has no hits.
BO13257.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:09 Download gff for
BO13257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11993-PA | 1..729 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:25 Download gff for
BO13257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11993-PA | 1..729 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:59 Download gff for
BO13257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst85C-RA | 139..870 | 13..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:41 Download gff for
BO13257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst85C-RA | 139..870 | 13..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:41 Download gff for
BO13257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9050959..9051127 | 13..183 | 98 | -> | Plus |
3R | 9051187..9051749 | 184..748 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:59 Download gff for
BO13257.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4876681..4876849 | 13..183 | 98 | -> | Plus |
arm_3R | 4876909..4877471 | 184..748 | 99 | | Plus |
BO13257.complete Sequence
760 bp assembled on 2008-08-14
GenBank Submission: FJ632737
> BO13257.complete
GAAGTTATCCCTCGACATGAAGCCCCAGAGCAAGCGGAAATCATTCCCAT
TCAATGCGCCTCCTCCGGGCGGTATCATGGACTTCGGATTCGGGAGCTGC
AGCACCTTCGGCAATTCGGTGGAGAATGATCTGGTAAAATGGCAGCATAA
GCGAAAATCCGAGCAGCCGGCACCGGCAGTGCTACCACCCAAAATGCTTA
TAACCGAGGAGAGGATCACCCAGCATTTCAGCGGTCTATCGCTGGATCCG
AAGATCAATGTCGCCGCCACGGCCGTTGTTAGCAACAACAACAGCGTGGC
CAGCGTTACGGGCGGACTGGCCACGGATGATATACCATCCACCAGCACCG
GGAAGACCCACCACCCCAATCCCGCCTATCAAATGGCGGCCATGGAACTG
GAGCAGAAACTGCGCAATGCCAATCGCATCGTAATTTGTGATGGCCTTAA
GCCAGGATCGGGTCCCGGTTCCGCTCCACCTGTAATACCACCGGAGTGGC
TAATCAAGTCCATACCACGTCCCTGCACCGCCTTGGTCCCTTGGCAGCCT
TCGCCACTGCAGATGCCGATGCCGATGCCGGAAGTCAAGATGGTGTCGCC
CCAAATAGTGGCACCCATGGCTGCGGCACCGGCGGTCCAGGAGCTGGATG
ACTACGATGACGATCTGGAGTTCTTCGAGAACAACAACACGTGCAGCGTG
AATCTTAACAAGTCTGAGCAGGAGCACATGGACGAAGACCTGGCAAGCTT
TCTAGACCAT
BO13257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst85C-RB | 729 | CG11993-PB | 1..726 | 17..742 | 3630 | 100 | Plus |
Mst85C-RA | 729 | CG11993-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst85C-RB | 1330 | CG11993-RB | 119..844 | 17..742 | 3630 | 100 | Plus |
Mst85C-RA | 1352 | CG11993-RA | 141..866 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9051187..9051745 | 184..742 | 2795 | 100 | Plus |
3R | 32079331 | 3R | 9050961..9051127 | 17..183 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:57:07 has no hits.
BO13257.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:05 Download gff for
BO13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst85C-RA | 136..867 | 13..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:27 Download gff for
BO13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst85C-RA | 141..866 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:33 Download gff for
BO13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst85C-RA | 138..863 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:39 Download gff for
BO13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst85C-RA | 141..866 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:39 Download gff for
BO13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9050961..9051127 | 17..183 | 100 | -> | Plus |
3R | 9051187..9051745 | 184..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:27 Download gff for
BO13257.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4876683..4876849 | 17..183 | 100 | -> | Plus |
arm_3R | 4876909..4877467 | 184..744 | 99 | | Plus |
BO13257.pep Sequence
Translation from 16 to 760
> BO13257.pep
MKPQSKRKSFPFNAPPPGGIMDFGFGSCSTFGNSVENDLVKWQHKRKSEQ
PAPAVLPPKMLITEERITQHFSGLSLDPKINVAATAVVSNNNSVASVTGG
LATDDIPSTSTGKTHHPNPAYQMAAMELEQKLRNANRIVICDGLKPGSGP
GSAPPVIPPEWLIKSIPRPCTALVPWQPSPLQMPMPMPEVKMVSPQIVAP
MAAAPAVQELDDYDDDLEFFENNNTCSVNLNKSEQEHMDEDLASFLDH
BO13257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst85C-PB | 242 | CG11993-PB | 1..242 | 1..242 | 1290 | 100 | Plus |
Mst85C-PA | 242 | CG11993-PA | 1..242 | 1..242 | 1290 | 100 | Plus |