Clone BO13259 Report

Search the DGRC for BO13259

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG18179-RA
Protein status:BO13259.pep: Imported from assembly
Sequenced Size:838

Clone Sequence Records

BO13259.5prime Sequence

778 bp (769 high quality bases) assembled on 2006-05-08

> BO13259.5prime
GAAGTTATCAGTCGACATGAAGCTGTTCCTACTTACACTCTCCGTGGCCC
TAGCCGTGGTCGCCGCCTCCCCAGGCTTCAACCGCACCAGCCTTCTGCCC
CAGGTGACCATTTCCGAGGGTGCCGAGGGCCGCATCGTCAACGGTTACCC
AGCGCCCGAGGGAAAGGCTCCCTACATTGTGGGACTGTTGATCCGCACCG
ATGGAAGCAACAGTGCCGCGGTTGGAGCTGGAACCATCATCGCCAGCGAC
TGGATTCTGACCGCCGCTCACTGTCTGACCACCGACTACGTGGAGATCCA
CTATGGATCCAACTGGGGCTGGAACGGAGCTTTCAGGCAATCTGTCCGCC
GTGACAACTTTATCAGCCATCCAAACTGGCCCGCTGAGGGCGGTCGTGAC
ATCGGTCTGATCCGCACTCCCTCCGTGGGCTTCACCGACTTGATCAACAA
GGTCGCCCTGCCAAGCTTCAGCGAGGAGAGCGACCGCTTCGTGGACACAT
GGTGCGTTGCCTGCGGATGGGGCGGCATGGACAATGGCAACCTGGCCGAC
TGGCTGCAGTGCATGGACGTCCAGATCATCAGCAACAGCGAGTGCGAGCA
GTCCTACGGCACCGTGGCCAGCACTGACATGTGCACGCGCCGCACCGATG
GCAAATCCTCTTGCGGAGGCGACTCTGGTGGTCCACTCGTTACCCATGAC
AACGCTCGGCTAGTGGGAGTGATTACCTTTTGGCTCGGTGGACTGCCACA
GCGGTCCTTCCGGCTACACCCGCGTCAC

BO13259.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18179-PA 807 CG18179-RA 1..714 17..730 3570 100 Plus
CG18180-PA 795 CG18180-RA 94..239 122..267 330 89 Plus
CG18180-PA 795 CG18180-RA 465..608 493..636 320 88.8 Plus
CG18179-PA 807 CG18179-RA 712..761 729..778 250 100 Plus
CG18180-PA 795 CG18180-RA 256..299 284..327 195 97.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18179-RA 870 CG18179-RA 18..779 16..778 3790 99.9 Plus
CG18180-RA 901 CG18180-RA 104..766 113..776 1570 82.7 Plus
CG8329-RA 910 CG8329-RA 367..671 398..702 415 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9639288..9640049 16..778 3765 99.9 Plus
3L 28110227 3L 9641116..9641778 113..776 1545 82.5 Plus
3L 28110227 3L 9638478..9638782 398..702 415 75.7 Plus
2L 23513712 2L 4950101..4950259 700..542 180 74.2 Minus
Blast to na_te.dros performed on 2015-02-12 19:16:54 has no hits.

BO13259.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:12 Download gff for BO13259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18179-PA 1..761 17..778 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:29 Download gff for BO13259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18179-PA 1..761 17..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:20 Download gff for BO13259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 15..779 10..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:54 Download gff for BO13259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 15..779 10..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:54 Download gff for BO13259.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9639285..9640049 10..778 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:20 Download gff for BO13259.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9632385..9633149 10..778 99   Plus

BO13259.complete Sequence

838 bp assembled on 2008-08-15

GenBank Submission: FJ632738

> BO13259.complete
GAAGTTATCAGTCGACATGAAGCTGTTCCTACTTACACTCTCCGTGGCCC
TAGCCGTGGTCGCCGCCTCCCCAGGCTTCAACCGCACCAGCCTTCTGCCC
CAGGTGACCATTTCCGAGGGTGCCGAGGGCCGCATCGTCAACGGTTACCC
AGCGCCCGAGGGAAAGGCTCCCTACATTGTGGGACTGTTGATCCGCACCG
ATGGAAGCAACAGTGCCGCGGTTGGAGCTGGAACCATCATCGCCAGCGAC
TGGATTCTGACCGCCGCTCACTGTCTGACCACCGACTACGTGGAGATCCA
CTATGGATCCAACTGGGGCTGGAACGGAGCTTTCAGGCAATCTGTCCGCC
GTGACAACTTTATCAGCCATCCAAACTGGCCCGCTGAGGGCGGTCGTGAC
ATCGGTCTGATCCGCACTCCCTCCGTGGGCTTCACCGACTTGATCAACAA
GGTCGCCCTGCCAAGCTTCAGCGAGGAGAGCGACCGCTTCGTGGACACAT
GGTGCGTTGCCTGCGGATGGGGCGGCATGGACAATGGCAACCTGGCCGAC
TGGCTGCAGTGCATGGACGTCCAGATCATCAGCAACAGCGAGTGCGAGCA
GTCCTACGGCACCGTGGCCAGCACTGACATGTGCACGCGCCGCACCGATG
GCAAATCCTCTTGCGGAGGCGACTCTGGTGGTCCACTCGTTACCCATGAC
AACGCTCGGCTAGTGGGAGTGATTACCTTTGGCTCGGTGGACTGCCACAG
CGGTCCTTCCGGCTACACCCGCGTCACCGACTACTTGGGATGGATCCGTG
ACAACACCGGCATCTCCTACGCAAGCTTTCTAGACCAT

BO13259.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18179-RA 807 CG18179-PA 1..804 17..820 4020 100 Plus
CG18180-RA 795 CG18180-PA 85..792 113..820 1680 82.5 Plus
CG8329-RA 780 CG8329-PA 352..752 398..798 430 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18179-RA 870 CG18179-RA 18..822 16..820 4025 100 Plus
CG18180-RA 901 CG18180-RA 104..811 113..820 1680 82.5 Plus
CG8329-RA 910 CG8329-RA 367..767 398..798 430 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9639288..9640092 16..820 4025 100 Plus
3L 28110227 3L 9641116..9641823 113..820 1680 82.5 Plus
3L 28110227 3L 9638478..9638878 398..798 430 73.8 Plus
Blast to na_te.dros performed on 2014-11-27 12:46:39 has no hits.

BO13259.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:46 Download gff for BO13259.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 13..830 10..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:26 Download gff for BO13259.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 19..822 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:33 Download gff for BO13259.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 17..820 17..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:21 Download gff for BO13259.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 19..822 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:21 Download gff for BO13259.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9639289..9640092 17..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:26 Download gff for BO13259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9632389..9633192 17..822 99   Plus

BO13259.pep Sequence

Translation from 16 to 838

> BO13259.pep
MKLFLLTLSVALAVVAASPGFNRTSLLPQVTISEGAEGRIVNGYPAPEGK
APYIVGLLIRTDGSNSAAVGAGTIIASDWILTAAHCLTTDYVEIHYGSNW
GWNGAFRQSVRRDNFISHPNWPAEGGRDIGLIRTPSVGFTDLINKVALPS
FSEESDRFVDTWCVACGWGGMDNGNLADWLQCMDVQIISNSECEQSYGTV
ASTDMCTRRTDGKSSCGGDSGGPLVTHDNARLVGVITFGSVDCHSGPSGY
TRVTDYLGWIRDNTGISYASFLDH

BO13259.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18179-PA 268 CG18179-PA 1..268 1..268 1443 100 Plus
CG18180-PA 264 CG18180-PA 1..264 1..268 1221 83.6 Plus
CG8329-PA 259 CG8329-PA 4..258 2..268 872 62.9 Plus
Jon25Bi-PB 266 CG8867-PB 1..265 1..268 631 49.3 Plus
Jon25Biii-PA 258 CG8871-PA 1..258 1..268 627 48.5 Plus