Clone Sequence Records
BO13259.5prime Sequence
778 bp (769 high quality bases) assembled on 2006-05-08
> BO13259.5prime
GAAGTTATCAGTCGACATGAAGCTGTTCCTACTTACACTCTCCGTGGCCC
TAGCCGTGGTCGCCGCCTCCCCAGGCTTCAACCGCACCAGCCTTCTGCCC
CAGGTGACCATTTCCGAGGGTGCCGAGGGCCGCATCGTCAACGGTTACCC
AGCGCCCGAGGGAAAGGCTCCCTACATTGTGGGACTGTTGATCCGCACCG
ATGGAAGCAACAGTGCCGCGGTTGGAGCTGGAACCATCATCGCCAGCGAC
TGGATTCTGACCGCCGCTCACTGTCTGACCACCGACTACGTGGAGATCCA
CTATGGATCCAACTGGGGCTGGAACGGAGCTTTCAGGCAATCTGTCCGCC
GTGACAACTTTATCAGCCATCCAAACTGGCCCGCTGAGGGCGGTCGTGAC
ATCGGTCTGATCCGCACTCCCTCCGTGGGCTTCACCGACTTGATCAACAA
GGTCGCCCTGCCAAGCTTCAGCGAGGAGAGCGACCGCTTCGTGGACACAT
GGTGCGTTGCCTGCGGATGGGGCGGCATGGACAATGGCAACCTGGCCGAC
TGGCTGCAGTGCATGGACGTCCAGATCATCAGCAACAGCGAGTGCGAGCA
GTCCTACGGCACCGTGGCCAGCACTGACATGTGCACGCGCCGCACCGATG
GCAAATCCTCTTGCGGAGGCGACTCTGGTGGTCCACTCGTTACCCATGAC
AACGCTCGGCTAGTGGGAGTGATTACCTTTTGGCTCGGTGGACTGCCACA
GCGGTCCTTCCGGCTACACCCGCGTCAC
BO13259.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18179-PA | 807 | CG18179-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
CG18180-PA | 795 | CG18180-RA | 94..239 | 122..267 | 330 | 89 | Plus |
CG18180-PA | 795 | CG18180-RA | 465..608 | 493..636 | 320 | 88.8 | Plus |
CG18179-PA | 807 | CG18179-RA | 712..761 | 729..778 | 250 | 100 | Plus |
CG18180-PA | 795 | CG18180-RA | 256..299 | 284..327 | 195 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18179-RA | 870 | CG18179-RA | 18..779 | 16..778 | 3790 | 99.9 | Plus |
CG18180-RA | 901 | CG18180-RA | 104..766 | 113..776 | 1570 | 82.7 | Plus |
CG8329-RA | 910 | CG8329-RA | 367..671 | 398..702 | 415 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9639288..9640049 | 16..778 | 3765 | 99.9 | Plus |
3L | 28110227 | 3L | 9641116..9641778 | 113..776 | 1545 | 82.5 | Plus |
3L | 28110227 | 3L | 9638478..9638782 | 398..702 | 415 | 75.7 | Plus |
2L | 23513712 | 2L | 4950101..4950259 | 700..542 | 180 | 74.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:16:54 has no hits.
BO13259.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:12 Download gff for
BO13259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18179-PA | 1..761 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:29 Download gff for
BO13259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18179-PA | 1..761 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:20 Download gff for
BO13259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18179-RA | 15..779 | 10..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:54 Download gff for
BO13259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18179-RA | 15..779 | 10..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:54 Download gff for
BO13259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9639285..9640049 | 10..778 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:20 Download gff for
BO13259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9632385..9633149 | 10..778 | 99 | | Plus |
BO13259.complete Sequence
838 bp assembled on 2008-08-15
GenBank Submission: FJ632738
> BO13259.complete
GAAGTTATCAGTCGACATGAAGCTGTTCCTACTTACACTCTCCGTGGCCC
TAGCCGTGGTCGCCGCCTCCCCAGGCTTCAACCGCACCAGCCTTCTGCCC
CAGGTGACCATTTCCGAGGGTGCCGAGGGCCGCATCGTCAACGGTTACCC
AGCGCCCGAGGGAAAGGCTCCCTACATTGTGGGACTGTTGATCCGCACCG
ATGGAAGCAACAGTGCCGCGGTTGGAGCTGGAACCATCATCGCCAGCGAC
TGGATTCTGACCGCCGCTCACTGTCTGACCACCGACTACGTGGAGATCCA
CTATGGATCCAACTGGGGCTGGAACGGAGCTTTCAGGCAATCTGTCCGCC
GTGACAACTTTATCAGCCATCCAAACTGGCCCGCTGAGGGCGGTCGTGAC
ATCGGTCTGATCCGCACTCCCTCCGTGGGCTTCACCGACTTGATCAACAA
GGTCGCCCTGCCAAGCTTCAGCGAGGAGAGCGACCGCTTCGTGGACACAT
GGTGCGTTGCCTGCGGATGGGGCGGCATGGACAATGGCAACCTGGCCGAC
TGGCTGCAGTGCATGGACGTCCAGATCATCAGCAACAGCGAGTGCGAGCA
GTCCTACGGCACCGTGGCCAGCACTGACATGTGCACGCGCCGCACCGATG
GCAAATCCTCTTGCGGAGGCGACTCTGGTGGTCCACTCGTTACCCATGAC
AACGCTCGGCTAGTGGGAGTGATTACCTTTGGCTCGGTGGACTGCCACAG
CGGTCCTTCCGGCTACACCCGCGTCACCGACTACTTGGGATGGATCCGTG
ACAACACCGGCATCTCCTACGCAAGCTTTCTAGACCAT
BO13259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18179-RA | 807 | CG18179-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
CG18180-RA | 795 | CG18180-PA | 85..792 | 113..820 | 1680 | 82.5 | Plus |
CG8329-RA | 780 | CG8329-PA | 352..752 | 398..798 | 430 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18179-RA | 870 | CG18179-RA | 18..822 | 16..820 | 4025 | 100 | Plus |
CG18180-RA | 901 | CG18180-RA | 104..811 | 113..820 | 1680 | 82.5 | Plus |
CG8329-RA | 910 | CG8329-RA | 367..767 | 398..798 | 430 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9639288..9640092 | 16..820 | 4025 | 100 | Plus |
3L | 28110227 | 3L | 9641116..9641823 | 113..820 | 1680 | 82.5 | Plus |
3L | 28110227 | 3L | 9638478..9638878 | 398..798 | 430 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:46:39 has no hits.
BO13259.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:46 Download gff for
BO13259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18179-RA | 13..830 | 10..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:26 Download gff for
BO13259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18179-RA | 19..822 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:33 Download gff for
BO13259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18179-RA | 17..820 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:21 Download gff for
BO13259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18179-RA | 19..822 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:21 Download gff for
BO13259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9639289..9640092 | 17..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:26 Download gff for
BO13259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9632389..9633192 | 17..822 | 99 | | Plus |
BO13259.pep Sequence
Translation from 16 to 838
> BO13259.pep
MKLFLLTLSVALAVVAASPGFNRTSLLPQVTISEGAEGRIVNGYPAPEGK
APYIVGLLIRTDGSNSAAVGAGTIIASDWILTAAHCLTTDYVEIHYGSNW
GWNGAFRQSVRRDNFISHPNWPAEGGRDIGLIRTPSVGFTDLINKVALPS
FSEESDRFVDTWCVACGWGGMDNGNLADWLQCMDVQIISNSECEQSYGTV
ASTDMCTRRTDGKSSCGGDSGGPLVTHDNARLVGVITFGSVDCHSGPSGY
TRVTDYLGWIRDNTGISYASFLDH
BO13259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18179-PA | 268 | CG18179-PA | 1..268 | 1..268 | 1443 | 100 | Plus |
CG18180-PA | 264 | CG18180-PA | 1..264 | 1..268 | 1221 | 83.6 | Plus |
CG8329-PA | 259 | CG8329-PA | 4..258 | 2..268 | 872 | 62.9 | Plus |
Jon25Bi-PB | 266 | CG8867-PB | 1..265 | 1..268 | 631 | 49.3 | Plus |
Jon25Biii-PA | 258 | CG8871-PA | 1..258 | 1..268 | 627 | 48.5 | Plus |