Clone BO13260 Report

Search the DGRC for BO13260

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG8366-RA
Protein status:BO13260.pep: Imported from assembly
Sequenced Size:1399

Clone Sequence Records

BO13260.complete Sequence

1399 bp assembled on 2008-11-10

GenBank Submission: KX796276

> BO13260.complete
GAAGTTATCAGTCGACATGAGGGGCATGATAATTGTGCCCATGGACCTGG
AACCCGGCTTCCGCAAAGCAGACATACACAATATACCCGCTTTGAACAGC
GGAATGGTGTACAATTTTTGTCTATCCGGCGCATCTGAGAAATCAAAACA
AATACCAACGAATAGATGTGATCTCCTCACGGATTACGTCCAGGTGCGCA
GACATGGCGACGTGTGCGAACTCAAGGGACTCGTGTTTTCTGCCACCGAC
TTCGCCAACACGGTAACTCACGCCAATGTATCGCTTAAGATCGTCGAAAG
TGCTCAGATGATCATGGACGGTCAATGCAGCCTGTGCACTGCAGCATGTA
CTTGTGCCCACATCGTGGCCTTCACCTTCTGGCTGCTAAACAAGAGCACA
GATCGAAATCCCTCGGCTGTGGTGGAGTTTTGGGGCCACGAGTTGGAAAA
TCTGGTGCAACCGGAGCCCACAACTGCTACTCGAATATGTGATATAATTC
CCAAGGATGATGTGCGAATGGAAAGCGAACTAAACTCGAAAGAACTTAGC
GCCAGCGAGGGAGAGGCTTTCCTAGTGACCATTCTGAATGAACTGGCCGA
CTGTGGCAGGGACTCGGCGCTCTACCGGCAATGTGTGGAGACCACCGATG
AGTTCGAGCCCATGTTCGTACACCATGTGCTGCTCCGAGCAAATGAGTAC
AATGTCGTCGATCCGTCCAGCTATGTGCAACACATGGAGGCACAGGCACA
TACGGGTATTATCGAAAGTCTGTACGAGGCAACGCGAAGCAAATACAAAT
CCCGATTGTGGGTGGAGGTACAGTATATGCGCATCCGTTGCTCCATGATG
CACATGATCATAAGCCGCAAAACCTCTGATGATGACGATCAAATCTTCAA
TATGATGTTTTGCAGAGGACGTGACAAGAATAACGAGGATCGGGTGCAGC
AGAAGGAGCACAAGCGCTTCATATTGAAACAGACTGAGAAGCTGGAGAAC
AAGAACTACTTAGAATGCGGTCTGATCCTGCACGAGAACTTCCCCTTCCT
GTGCGCCGCCCCTGATGGCATCACGGACGATCACATTGTCGAAATCAAAT
CACCAAAGACTGACGAGGACTTCGAGAAGTACCTCGAGGCACGCGAATCT
ATTGCACCCAAGTACATGGCCCAAATACAAATCCAGATGTTTGCGGCGAA
TGTTAAAAAGGCGCTCTACTGCGTGCTAAGTCCCACGTTCGAGAGCAACG
GAGCACTACACTACGTTTGGGTACAGGCGGATCCGGAATTCGTTAGCAGT
TTGCTGAGCATGGCTGAAGACTTCTGGCGGGACGTTGTCTTTCCCCGCCT
ATTGAATATCTACCCCCAGTGCCCAGGTCAAGCAAGCTTTCTAGACCAT

BO13260.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-RA 1368 CG8366-PA 1..1365 17..1381 6810 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-RA 1472 CG8366-RA 79..1443 17..1381 6810 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15955574..15956607 348..1381 5155 99.9 Plus
2R 25286936 2R 15955323..15955518 154..349 980 100 Plus
2R 25286936 2R 15955118..15955254 17..153 685 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:47:29 has no hits.

BO13260.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:33 Download gff for BO13260.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 77..1444 17..1385 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:37 Download gff for BO13260.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 79..1443 17..1383 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:27 Download gff for BO13260.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 77..1441 17..1383 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:35 Download gff for BO13260.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 79..1443 17..1383 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:35 Download gff for BO13260.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15955118..15955254 17..153 100 -> Plus
2R 15955323..15955516 154..347 100 -> Plus
2R 15955574..15956607 348..1383 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:37 Download gff for BO13260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11842623..11842759 17..153 100 -> Plus
arm_2R 11842828..11843021 154..347 100 -> Plus
arm_2R 11843079..11844112 348..1383 99   Plus

BO13260.3prime Sequence

842 bp (755 high quality bases) assembled on 2006-05-08

> BO13260.3prime
ATGGTCTAGAAAGCTTGCTTCACCTGGGCACTGGGGGTAGATATTCAATA
GGCGGGGAAAGACAACGTCCCGCCAGAAGTCTTCAGCCATGCTCAGCAAA
CTGCTAACGAATTCCGGATCCGCCTGTACCCAAACGTAGTGTAGTGCTCC
GTTGCTCTCGAACGTGGGACTTAGCACGCAGTAGAGCGCCTTTTTAACAT
TCGCCGCAAACATCTGGATTTGTATTTGGGCCATGTACTTGGGTGCAATA
GATTCGCGTGCCTCGAGGTACTTCTCGAAGTCCTCGTCAGTCTTTGGTGA
TTTGATTTCGACAATGTGATCGTCCGTGATGCCATCAGGGGCGGCGCACA
GGAAGGGGAAGTTCTCGTGCAGGATCAGACCGCATTCTAAGTAGTTCTTG
TTCTCCAGCTTCTCAGTCTGTTTCAATATGAAGCGCTTGTGCTCCTTCTG
CTGCACCCGATCCTCGTTATTCTTGTCACGTCCTCTGCAAAACATCATAT
TGAAGATTTGATCGTCATCATCAGAGGTTTTGCGGCTTATGATCATGTGC
ATCATGGAGCAACGGATGCGCATATACTGTACCTCCACCCACAATCGGGA
TTTGTATTTGCTTCGCGTTGCCTCGTACAGACTTTCGATAATACCCGTAT
GTGCCTGTGCCTCCATGTGTTGCACATAGCTGGACGGATCGACGACATTG
TACTCATTTGCTCGGAGCAGCACATGGTGTACGAACATGGGCTCGAACTC
ATCGGTGGGCTCCACACATTGCCGGTAGAGCGCCGAGTCCCTGCCACAGT
CGGCCAGTTCATTCAGAATGGTCACTAGGAAAGCCTCTCTCT

BO13260.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-PA 1368 CG8366-RA 545..1362 839..22 4040 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-RA 1472 CG8366-RA 623..1440 839..22 4060 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15955787..15956604 839..22 4060 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 18:34:16 has no hits.

BO13260.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:13 Download gff for BO13260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8366-PA 542..1368 15..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:31 Download gff for BO13260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8366-PA 542..1368 15..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:56 Download gff for BO13260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 620..1446 15..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:23 Download gff for BO13260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 620..1446 15..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:23 Download gff for BO13260.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15955784..15956610 15..842 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:56 Download gff for BO13260.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11843289..11844115 15..842 99   Minus

BO13260.5prime Sequence

858 bp (755 high quality bases) assembled on 2006-05-08

> BO13260.5prime
GAAGTTATCAGTCGACATGAGGGGCATGATAATTGTGCCCATGGACCTGG
AACCCGGCTTCCGCAAAGCAGACATACACAATATACCCGCTTTGAACAGC
GGAATGGTGTACAATTTTTGTCTATCCGGCGCATCTGAGAAATCAAAACA
AATACCAACGAATAGATGTGATCTCCTCACGGATTACGTCCAGGTGCGCA
GACATGGCGACGTGTGCGAACTCAAGGGACTCGTGTTTTCTGCCACCGAC
TTCGCCAACACGGTAACTCACGCCAATGTATCGCTTAAGATCGTCGAAAG
TGCTCAGATGATCATGGACGGTCAATGCAGCCTGTGCACTGCAGCATGTA
CTTGTGCCCACATCGTGGCCTTCACCTTCTGGCTGCTAAACAAGAGCACA
GATCGAAATCCCTCGGCTGTGGTGGAGTTTTGGGGCCACGAGTTGGAAAA
TCTGGTGCAACCGGAGCCCACAACTGCTACTCGAATATGTGATATAATTC
CCAAGGATGATGTGCGAATGGAAAGCGAACTAAACTCGAAAGAACTTAGC
GCCAGCGAGGGAGAGGCTTTCCTAGTGACCATTCTGAATGAACTGGCCGA
CTGTGGCAGGGACTCGGCGCTCTACCGGCAATGTGTGGAGACCACCGATG
AGTTCGAGCCCATGTTCGTACACCATGTGCTGCTCCGAGCAAATGAGTAC
AATGTCGTCGATCCGTCCAGCTATGTGCAACACATGGAGGCACAGGCACA
TACGGGTATTATCGAAAGTCTGTACGAGGCAACGCGAAACAAATACAAAT
CCCGATTGTGGGTGGAGGTACAGTATATGCGCATCCGTTGCTCCATGATG
CACATGAT

BO13260.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-PA 1368 CG8366-RA 1..842 17..858 4185 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-RA 1472 CG8366-RA 79..920 17..858 4195 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15955574..15956084 348..858 2540 99.8 Plus
2R 25286936 2R 15955323..15955518 154..349 980 100 Plus
2R 25286936 2R 15955118..15955254 17..153 685 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:46:27 has no hits.

BO13260.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:14 Download gff for BO13260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8366-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:32 Download gff for BO13260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8366-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:58 Download gff for BO13260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 79..920 17..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:22 Download gff for BO13260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 79..920 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:22 Download gff for BO13260.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15955118..15955254 17..153 100 -> Plus
2R 15955323..15955516 154..347 100 -> Plus
2R 15955574..15956084 348..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:58 Download gff for BO13260.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11842623..11842759 17..153 100 -> Plus
arm_2R 11842828..11843021 154..347 100 -> Plus
arm_2R 11843079..11843589 348..858 99   Plus

BO13260.pep Sequence

Translation from 16 to 1399

> BO13260.pep
MRGMIIVPMDLEPGFRKADIHNIPALNSGMVYNFCLSGASEKSKQIPTNR
CDLLTDYVQVRRHGDVCELKGLVFSATDFANTVTHANVSLKIVESAQMIM
DGQCSLCTAACTCAHIVAFTFWLLNKSTDRNPSAVVEFWGHELENLVQPE
PTTATRICDIIPKDDVRMESELNSKELSASEGEAFLVTILNELADCGRDS
ALYRQCVETTDEFEPMFVHHVLLRANEYNVVDPSSYVQHMEAQAHTGIIE
SLYEATRSKYKSRLWVEVQYMRIRCSMMHMIISRKTSDDDDQIFNMMFCR
GRDKNNEDRVQQKEHKRFILKQTEKLENKNYLECGLILHENFPFLCAAPD
GITDDHIVEIKSPKTDEDFEKYLEARESIAPKYMAQIQIQMFAANVKKAL
YCVLSPTFESNGALHYVWVQADPEFVSSLLSMAEDFWRDVVFPRLLNIYP
QCPGQASFLDH

BO13260.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-PA 455 CG8366-PA 1..455 1..455 2407 100 Plus