Clone Sequence Records
BO13260.complete Sequence
1399 bp assembled on 2008-11-10
GenBank Submission: KX796276
> BO13260.complete
GAAGTTATCAGTCGACATGAGGGGCATGATAATTGTGCCCATGGACCTGG
AACCCGGCTTCCGCAAAGCAGACATACACAATATACCCGCTTTGAACAGC
GGAATGGTGTACAATTTTTGTCTATCCGGCGCATCTGAGAAATCAAAACA
AATACCAACGAATAGATGTGATCTCCTCACGGATTACGTCCAGGTGCGCA
GACATGGCGACGTGTGCGAACTCAAGGGACTCGTGTTTTCTGCCACCGAC
TTCGCCAACACGGTAACTCACGCCAATGTATCGCTTAAGATCGTCGAAAG
TGCTCAGATGATCATGGACGGTCAATGCAGCCTGTGCACTGCAGCATGTA
CTTGTGCCCACATCGTGGCCTTCACCTTCTGGCTGCTAAACAAGAGCACA
GATCGAAATCCCTCGGCTGTGGTGGAGTTTTGGGGCCACGAGTTGGAAAA
TCTGGTGCAACCGGAGCCCACAACTGCTACTCGAATATGTGATATAATTC
CCAAGGATGATGTGCGAATGGAAAGCGAACTAAACTCGAAAGAACTTAGC
GCCAGCGAGGGAGAGGCTTTCCTAGTGACCATTCTGAATGAACTGGCCGA
CTGTGGCAGGGACTCGGCGCTCTACCGGCAATGTGTGGAGACCACCGATG
AGTTCGAGCCCATGTTCGTACACCATGTGCTGCTCCGAGCAAATGAGTAC
AATGTCGTCGATCCGTCCAGCTATGTGCAACACATGGAGGCACAGGCACA
TACGGGTATTATCGAAAGTCTGTACGAGGCAACGCGAAGCAAATACAAAT
CCCGATTGTGGGTGGAGGTACAGTATATGCGCATCCGTTGCTCCATGATG
CACATGATCATAAGCCGCAAAACCTCTGATGATGACGATCAAATCTTCAA
TATGATGTTTTGCAGAGGACGTGACAAGAATAACGAGGATCGGGTGCAGC
AGAAGGAGCACAAGCGCTTCATATTGAAACAGACTGAGAAGCTGGAGAAC
AAGAACTACTTAGAATGCGGTCTGATCCTGCACGAGAACTTCCCCTTCCT
GTGCGCCGCCCCTGATGGCATCACGGACGATCACATTGTCGAAATCAAAT
CACCAAAGACTGACGAGGACTTCGAGAAGTACCTCGAGGCACGCGAATCT
ATTGCACCCAAGTACATGGCCCAAATACAAATCCAGATGTTTGCGGCGAA
TGTTAAAAAGGCGCTCTACTGCGTGCTAAGTCCCACGTTCGAGAGCAACG
GAGCACTACACTACGTTTGGGTACAGGCGGATCCGGAATTCGTTAGCAGT
TTGCTGAGCATGGCTGAAGACTTCTGGCGGGACGTTGTCTTTCCCCGCCT
ATTGAATATCTACCCCCAGTGCCCAGGTCAAGCAAGCTTTCTAGACCAT
BO13260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8366-RA | 1368 | CG8366-PA | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8366-RA | 1472 | CG8366-RA | 79..1443 | 17..1381 | 6810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15955574..15956607 | 348..1381 | 5155 | 99.9 | Plus |
2R | 25286936 | 2R | 15955323..15955518 | 154..349 | 980 | 100 | Plus |
2R | 25286936 | 2R | 15955118..15955254 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:47:29 has no hits.
BO13260.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:33 Download gff for
BO13260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-RA | 77..1444 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:37 Download gff for
BO13260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-RA | 79..1443 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:27 Download gff for
BO13260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-RA | 77..1441 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:35 Download gff for
BO13260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-RA | 79..1443 | 17..1383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:35 Download gff for
BO13260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15955118..15955254 | 17..153 | 100 | -> | Plus |
2R | 15955323..15955516 | 154..347 | 100 | -> | Plus |
2R | 15955574..15956607 | 348..1383 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:37 Download gff for
BO13260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11842623..11842759 | 17..153 | 100 | -> | Plus |
arm_2R | 11842828..11843021 | 154..347 | 100 | -> | Plus |
arm_2R | 11843079..11844112 | 348..1383 | 99 | | Plus |
BO13260.3prime Sequence
842 bp (755 high quality bases) assembled on 2006-05-08
> BO13260.3prime
ATGGTCTAGAAAGCTTGCTTCACCTGGGCACTGGGGGTAGATATTCAATA
GGCGGGGAAAGACAACGTCCCGCCAGAAGTCTTCAGCCATGCTCAGCAAA
CTGCTAACGAATTCCGGATCCGCCTGTACCCAAACGTAGTGTAGTGCTCC
GTTGCTCTCGAACGTGGGACTTAGCACGCAGTAGAGCGCCTTTTTAACAT
TCGCCGCAAACATCTGGATTTGTATTTGGGCCATGTACTTGGGTGCAATA
GATTCGCGTGCCTCGAGGTACTTCTCGAAGTCCTCGTCAGTCTTTGGTGA
TTTGATTTCGACAATGTGATCGTCCGTGATGCCATCAGGGGCGGCGCACA
GGAAGGGGAAGTTCTCGTGCAGGATCAGACCGCATTCTAAGTAGTTCTTG
TTCTCCAGCTTCTCAGTCTGTTTCAATATGAAGCGCTTGTGCTCCTTCTG
CTGCACCCGATCCTCGTTATTCTTGTCACGTCCTCTGCAAAACATCATAT
TGAAGATTTGATCGTCATCATCAGAGGTTTTGCGGCTTATGATCATGTGC
ATCATGGAGCAACGGATGCGCATATACTGTACCTCCACCCACAATCGGGA
TTTGTATTTGCTTCGCGTTGCCTCGTACAGACTTTCGATAATACCCGTAT
GTGCCTGTGCCTCCATGTGTTGCACATAGCTGGACGGATCGACGACATTG
TACTCATTTGCTCGGAGCAGCACATGGTGTACGAACATGGGCTCGAACTC
ATCGGTGGGCTCCACACATTGCCGGTAGAGCGCCGAGTCCCTGCCACAGT
CGGCCAGTTCATTCAGAATGGTCACTAGGAAAGCCTCTCTCT
BO13260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8366-PA | 1368 | CG8366-RA | 545..1362 | 839..22 | 4040 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8366-RA | 1472 | CG8366-RA | 623..1440 | 839..22 | 4060 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15955787..15956604 | 839..22 | 4060 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:34:16 has no hits.
BO13260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:13 Download gff for
BO13260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-PA | 542..1368 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:31 Download gff for
BO13260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-PA | 542..1368 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:56 Download gff for
BO13260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-RA | 620..1446 | 15..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:23 Download gff for
BO13260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-RA | 620..1446 | 15..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:23 Download gff for
BO13260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15955784..15956610 | 15..842 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:56 Download gff for
BO13260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11843289..11844115 | 15..842 | 99 | | Minus |
BO13260.5prime Sequence
858 bp (755 high quality bases) assembled on 2006-05-08
> BO13260.5prime
GAAGTTATCAGTCGACATGAGGGGCATGATAATTGTGCCCATGGACCTGG
AACCCGGCTTCCGCAAAGCAGACATACACAATATACCCGCTTTGAACAGC
GGAATGGTGTACAATTTTTGTCTATCCGGCGCATCTGAGAAATCAAAACA
AATACCAACGAATAGATGTGATCTCCTCACGGATTACGTCCAGGTGCGCA
GACATGGCGACGTGTGCGAACTCAAGGGACTCGTGTTTTCTGCCACCGAC
TTCGCCAACACGGTAACTCACGCCAATGTATCGCTTAAGATCGTCGAAAG
TGCTCAGATGATCATGGACGGTCAATGCAGCCTGTGCACTGCAGCATGTA
CTTGTGCCCACATCGTGGCCTTCACCTTCTGGCTGCTAAACAAGAGCACA
GATCGAAATCCCTCGGCTGTGGTGGAGTTTTGGGGCCACGAGTTGGAAAA
TCTGGTGCAACCGGAGCCCACAACTGCTACTCGAATATGTGATATAATTC
CCAAGGATGATGTGCGAATGGAAAGCGAACTAAACTCGAAAGAACTTAGC
GCCAGCGAGGGAGAGGCTTTCCTAGTGACCATTCTGAATGAACTGGCCGA
CTGTGGCAGGGACTCGGCGCTCTACCGGCAATGTGTGGAGACCACCGATG
AGTTCGAGCCCATGTTCGTACACCATGTGCTGCTCCGAGCAAATGAGTAC
AATGTCGTCGATCCGTCCAGCTATGTGCAACACATGGAGGCACAGGCACA
TACGGGTATTATCGAAAGTCTGTACGAGGCAACGCGAAACAAATACAAAT
CCCGATTGTGGGTGGAGGTACAGTATATGCGCATCCGTTGCTCCATGATG
CACATGAT
BO13260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8366-PA | 1368 | CG8366-RA | 1..842 | 17..858 | 4185 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8366-RA | 1472 | CG8366-RA | 79..920 | 17..858 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15955574..15956084 | 348..858 | 2540 | 99.8 | Plus |
2R | 25286936 | 2R | 15955323..15955518 | 154..349 | 980 | 100 | Plus |
2R | 25286936 | 2R | 15955118..15955254 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:46:27 has no hits.
BO13260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:14 Download gff for
BO13260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:32 Download gff for
BO13260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:58 Download gff for
BO13260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-RA | 79..920 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:22 Download gff for
BO13260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8366-RA | 79..920 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:22 Download gff for
BO13260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15955118..15955254 | 17..153 | 100 | -> | Plus |
2R | 15955323..15955516 | 154..347 | 100 | -> | Plus |
2R | 15955574..15956084 | 348..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:58 Download gff for
BO13260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11842623..11842759 | 17..153 | 100 | -> | Plus |
arm_2R | 11842828..11843021 | 154..347 | 100 | -> | Plus |
arm_2R | 11843079..11843589 | 348..858 | 99 | | Plus |
BO13260.pep Sequence
Translation from 16 to 1399
> BO13260.pep
MRGMIIVPMDLEPGFRKADIHNIPALNSGMVYNFCLSGASEKSKQIPTNR
CDLLTDYVQVRRHGDVCELKGLVFSATDFANTVTHANVSLKIVESAQMIM
DGQCSLCTAACTCAHIVAFTFWLLNKSTDRNPSAVVEFWGHELENLVQPE
PTTATRICDIIPKDDVRMESELNSKELSASEGEAFLVTILNELADCGRDS
ALYRQCVETTDEFEPMFVHHVLLRANEYNVVDPSSYVQHMEAQAHTGIIE
SLYEATRSKYKSRLWVEVQYMRIRCSMMHMIISRKTSDDDDQIFNMMFCR
GRDKNNEDRVQQKEHKRFILKQTEKLENKNYLECGLILHENFPFLCAAPD
GITDDHIVEIKSPKTDEDFEKYLEARESIAPKYMAQIQIQMFAANVKKAL
YCVLSPTFESNGALHYVWVQADPEFVSSLLSMAEDFWRDVVFPRLLNIYP
QCPGQASFLDH
BO13260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8366-PA | 455 | CG8366-PA | 1..455 | 1..455 | 2407 | 100 | Plus |