Clone Sequence Records
BO13263.3prime Sequence
787 bp (658 high quality bases) assembled on 2006-05-08
> BO13263.3prime
ATGGTCTAGAAAGCTTGCATATTTTTGCACTTTATTGGCTCTTCTTAGTT
TTTGAAGTTCAAAATTTCGAATTAAGTTTTGCGAAAGAGCACGTAAAGCC
TCACTGGACGAACTATGTGAACCCGCAGTGCTGGTAGCTCCACCCGGAGT
GGTTGGCTTGGCAAATCCGATTGAGAACTTGATCATTAGGTCGCCAATTG
GCGAGTTGACGAATTGCGAGCCCGTTGAGATGGTCTTGAAGATGATGCGA
CGCTTGTGCTGGTAAACCTGCGGGTCACTTGGCAGGCTGTTTCCCGGCTG
AGGATTTGCCTTGGGTTTGGTGCTGGAACCAATCTTGGGCCGTGGAGTGC
TGGTGGTCACATTTGGTGATTGCTCTGTGGTGCTGGTTTGGTTCAATGGA
CTTTCCGAGATCCTGGGCTGAGCAGTGGTTCTTGTCCTGGTGGTTCGTGG
CTGAAAAGTGGTTGTGCTGCGTCGTCTGTACGGTTTGCGAGTGGTGGTGG
TTGGAAGGCTCAACGAAGGTGCCTGGTAGCCTGGGTCCTCATCCTCGGGA
GCATCTGACACGGCGTCCGGTTTCTCGGGGTCCGACGGATAACCCTGATC
CGTCTGATCCTCCTCGTCCTCGTAGTCATCCTGTAGATCACCATCTCGAT
CTCCGCCGGAGAAGTACGGTGGCTGGTGTGGTGGTTTCTGATCGCGACGA
TCCTGCTTCTCGCGGTGCTGCTCGTAGACGGGGTCATTGGGAGCCGATGA
GGCCAACCTTGTTCCATCTGTTTTTGAGGATCTCGAA
BO13263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14110-PA | 1047 | CG14110-RA | 306..1044 | 757..19 | 3670 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14110-RA | 1085 | CG14110-RA | 298..1066 | 785..19 | 3765 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13385147..13385906 | 777..19 | 3720 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:29:20 has no hits.
BO13263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:19 Download gff for
BO13263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-PA | 276..1047 | 18..785 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:38 Download gff for
BO13263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-PA | 276..1047 | 18..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:40:04 Download gff for
BO13263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 296..1066 | 19..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:36 Download gff for
BO13263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 296..1066 | 19..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:36 Download gff for
BO13263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13385136..13385906 | 19..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:40:04 Download gff for
BO13263.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13378236..13379006 | 19..787 | 99 | | Minus |
BO13263.5prime Sequence
833 bp (687 high quality bases) assembled on 2006-05-08
> BO13263.5prime
GAAGTTATCAGTCGACATGGGAGCCACTAGTGTCGGAGTTCCAGTCTGGA
AGATTCAGCTACTGATTCTGCTGAGTGCAGTTGTTCTCACCATTCAAGCT
GCTCCTGTCGAGGTAACCGAAGGAGTGACCCAACCCCCAGCCGAGAAGCT
GCAAACGGAGTCTCGTTCCCGTAAAGATGAAGAGCTGGAACTAGAAGAAG
ACCTGGATGGACGTAATGCCTATATCAACAATCAGTTTGTGCCAAGCGAA
CCTGCAGAAGTCCTAGAGGATGTGCAGAATACGCCGCTCTACGAGATCCT
TCAAAAGCAGATGGAACAAGTGTTGGCCTCATCGGCTCCCAATGACCCTG
TCTACGAGCAGCACCGCGAGAAGCAGGATCGTCGCGATCAGAAACCACCA
CACCAGCCACCGTACTTCTCCGGCGGAGATCGAGATGGTGATCTACAGGA
TGACTACGAGGACGAGGAGGATCAGACGGATCAGGGTTATCCGTCGGACC
CCGAGAAACCGGACGCCGTGTCAGATGCTCCCGAGGATGAGGACCCAGGC
TACCAGGCACCTTCGTTGAGCCTTCCAACCACCACCACTCGCAAACCGTA
CAGACGACGCAGCACAACCACTTTTCAGCCACGAACCACCAGGACAAGAA
CCACTGCTCAGCCCAGGATCTCGGAAAGTCCATTGAACCAAACCAGCACC
ACAGAGCAATCACCAAATGTGACCACCAGCACTCCACGGCCCAAGATTGG
TTCCAGCACCAAACCAAAGGCAAATCCTCAGCCGGGAAACAGCCTGCCAA
GTGACCCGCAGGTTTACCAGCACAAGCGTCGCA
BO13263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14110-PA | 1047 | CG14110-RA | 1..817 | 17..833 | 4060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14110-RA | 1085 | CG14110-RA | 23..839 | 17..833 | 4070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13384925..13385679 | 79..833 | 3760 | 99.9 | Plus |
| 3L | 28110227 | 3L | 13384811..13384874 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:56:25 has no hits.
BO13263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:21 Download gff for
BO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:40 Download gff for
BO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:06 Download gff for
BO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 23..838 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:53 Download gff for
BO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 23..838 | 17..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:53 Download gff for
BO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13384811..13384874 | 17..80 | 100 | -> | Plus |
| 3L | 13384927..13385678 | 81..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:06 Download gff for
BO13263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13377911..13377974 | 17..80 | 100 | -> | Plus |
| arm_3L | 13378027..13378778 | 81..832 | 99 | | Plus |
BO13263.complete Sequence
1078 bp assembled on 2006-10-11
GenBank Submission: FJ632739
> BO13263.complete
GAAGTTATCAGTCGACATGGGAGCCACTAGTGTCGGAGTTCCAGTCTGGA
AGATTCAGCTACTGATTCTGCTGAGTGCAGTTGTTCTCACCATTCAAGCT
GCTCCTGTCGAGGTAACCGAAGGAGTGACCCAACCCCCAGCCGAGAAGCT
GCAAACGGAGTCTCGTTCCCGTAAAGATGAAGAGCTGGAACTAGAAGAAG
ACCTGGATGGACGTAATGCCTATATCAACAATCAGTTTGTGCCAAGCGAA
CCTGCAGAAGTCCTAGAGGATGTGCAGAATACGCCGCTCTACGAGATCCT
TCAAAAGCAGATGGAACAAGTGTTGGCCTCATCGGCTCCCAATGACCCTG
TCTACGAGCAGCACCGCGAGAAGCAGGATCGTCGCGATCAGAAACCACCA
CACCAGCCACCGTACTTCTCCGGCGGAGATCGAGATGGTGATCTACAGGA
TGACTACGAGGACGAGGAGGATCAGACGGATCAGGGTTATCCGTCGGACC
CCGAGAAACCGGACGCCGTGTCAGATGCTCCCGAGGATGAGGACCCAGGC
TACCAGGCACCTTCGTTGAGCCTTCCAACCACCACCACTCGCAAACCGTA
CAGACGACGCAGCACAACCACTTTTCAGCCACGAACCACCAGGACAAGAA
CCACTGCTCAGCCCAGGATCTCGGAAAGTCCATTGAACCAAACCAGCACC
ACAGAGCAATCACCAAATGTGACCACCAGCACTCCACGGCCCAAGATTGG
TTCCAGCACCAAACCCAAGGCAAATCCTCAGCCGGGAAACAGCCTGCCAA
GTGACCCGCAGGTTTACCAGCACAAGCGTCGCATCATCTTCAAGACCATC
TCAACGGGCTCGCAATTCGTCAACTCGCCAATTGGCGACCTAATGATCAA
GTTCTCAATCGGATTTGCCAAGCCAACCACTCCGGGTGGAGCTACCAGCA
CTGCGGGTTCACATAGTTCGTCCAGTGAGGCTTTACGTGCTCTTTCGCAA
AACTTAATTCGAAATTTTGAACTTCAAAAACTAAGAAGAGCCAATAAAGT
GCAAAAATATGCAAGCTTTCTAGACCAT
BO13263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14110-RA | 1047 | CG14110-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14110-RA | 1085 | CG14110-RA | 23..1066 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13384925..13385906 | 79..1060 | 4910 | 100 | Plus |
| 3L | 28110227 | 3L | 13384811..13384874 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:44:55 has no hits.
BO13263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:01 Download gff for
BO13263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 1..1047 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:41 Download gff for
BO13263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 21..1064 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:34 Download gff for
BO13263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 23..1066 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:01 Download gff for
BO13263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 21..1064 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:45 Download gff for
BO13263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14110-RA | 23..1066 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:45 Download gff for
BO13263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13384811..13384874 | 17..80 | 100 | -> | Plus |
| 3L | 13384927..13385906 | 81..1062 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:34 Download gff for
BO13263.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13377911..13377974 | 17..80 | 100 | -> | Plus |
| arm_3L | 13378027..13379006 | 81..1062 | 99 | | Plus |
BO13263.pep Sequence
Translation from 16 to 1078
> BO13263.pep
MGATSVGVPVWKIQLLILLSAVVLTIQAAPVEVTEGVTQPPAEKLQTESR
SRKDEELELEEDLDGRNAYINNQFVPSEPAEVLEDVQNTPLYEILQKQME
QVLASSAPNDPVYEQHREKQDRRDQKPPHQPPYFSGGDRDGDLQDDYEDE
EDQTDQGYPSDPEKPDAVSDAPEDEDPGYQAPSLSLPTTTTRKPYRRRST
TTFQPRTTRTRTTAQPRISESPLNQTSTTEQSPNVTTSTPRPKIGSSTKP
KANPQPGNSLPSDPQVYQHKRRIIFKTISTGSQFVNSPIGDLMIKFSIGF
AKPTTPGGATSTAGSHSSSSEALRALSQNLIRNFELQKLRRANKVQKYAS
FLDH
BO13263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14110-PA | 348 | CG14110-PA | 1..348 | 1..348 | 1799 | 100 | Plus |
