Clone Sequence Records
BO13264.5prime Sequence
470 bp (469 high quality bases) assembled on 2006-05-08
> BO13264.5prime
GAAGTTATCAGTCGACATGATTGACCAGCACAAGCGCAGCCACAAATCAG
AGAAATCCAGTCGCAAGTCGGGAAAGAAACATTCCGACAAACCACACAAG
GTGAAGACCCACGATCCGCTCAAGAAACAAAAGAAGCGGGCTCTAAAGAA
GCTCCGCCGCAAGTCCGCCACCGTGAATTTCCCGTACCAACTCTTCTTGT
ACCGCCAAGAACTAAGGCGGGCCAGCGCCGACTTTTCCTATCTCCGGCTG
TCCAAGGCCAAGATAGTGCTTACCTCCCAACTAATCGCCAAGAAGATGGG
CAGCTGCAATCCCGATTGCAGCGTGGACGAGCTTAAGGAACTCAGCCGCG
AGGTGCAGTTCCAGAAACGCCTCTGCCATCAAGTGGAGCGCCTGCAGCAA
TTCCGGCAACTGGGACTCACCGAGATGATCCTCAACGGCAAGAAGACGAC
GCTGGCAAGCTTTCTAGACC
BO13264.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14112-PA | 441 | SNCF-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNCF-RA | 608 | CG14112-RA | 39..477 | 16..454 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13378621..13379059 | 16..454 | 2195 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 2765..2820 | 43..98 | 109 | 66.1 | Plus |
BO13264.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:22 Download gff for
BO13264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNCF-PA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:41 Download gff for
BO13264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14112-PA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:41 Download gff for
BO13264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNCF-RA | 34..483 | 9..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:11:08 Download gff for
BO13264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNCF-RA | 34..483 | 9..461 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:11:08 Download gff for
BO13264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13378616..13379065 | 9..461 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:41 Download gff for
BO13264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13371716..13372165 | 9..461 | 98 | | Plus |
BO13264.complete Sequence
472 bp assembled on 2006-10-11
GenBank Submission: FJ632740
> BO13264.complete
GAAGTTATCAGTCGACATGATTGACCAGCACAAGCGCAGCCACAAATCAG
AGAAATCCAGTCGCAAGTCGGGAAAGAAACATTCCGACAAACCACACAAG
GTGAAGACCCACGATCCGCTCAAGAAACAAAAGAAGCGGGCTCTAAAGAA
GCTCCGCCGCAAGTCCGCCACCGTGAATTTCCCGTACCAACTCTTCTTGT
ACCGCCAAGAACTAAGGCGGGCCAGCGCCGACTTTTCCTATCTCCGGCTG
TCCAAGGCCAAGATAGTGCTTACCTCCCAACTAATCGCCAAGAAGATGGG
CAGCTGCAATCCCGATTGCAGCGTGGACGAGCTTAAGGAACTCAGCCGCG
AGGTGCAGTTCCAGAAACGCCTCTGCCATCAAGTGGAGCGCCTGCAGCAA
TTCCGGCAACTGGGACTCACCGAGATGATCCTCAACGGCAAGAAGACGAC
GCTGGCAAGCTTTCTAGACCAT
BO13264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNCF-RA | 441 | CG14112-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNCF-RA | 608 | CG14112-RA | 39..477 | 16..454 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13378621..13379059 | 16..454 | 2195 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 2765..2820 | 43..98 | 109 | 66.1 | Plus |
BO13264.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:02 Download gff for
BO13264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNCF-RA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:44 Download gff for
BO13264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNCF-RA | 32..481 | 9..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:11 Download gff for
BO13264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNCF-RA | 40..477 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:02 Download gff for
BO13264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNCF-RA | 32..481 | 9..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:13 Download gff for
BO13264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SNCF-RA | 40..477 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:13 Download gff for
BO13264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13378622..13379059 | 17..456 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:11 Download gff for
BO13264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13371722..13372159 | 17..456 | 99 | | Plus |
BO13264.pep Sequence
Translation from 16 to 472
> BO13264.pep
MIDQHKRSHKSEKSSRKSGKKHSDKPHKVKTHDPLKKQKKRALKKLRRKS
ATVNFPYQLFLYRQELRRASADFSYLRLSKAKIVLTSQLIAKKMGSCNPD
CSVDELKELSREVQFQKRLCHQVERLQQFRQLGLTEMILNGKKTTLASFL
DH
BO13264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SNCF-PA | 146 | CG14112-PA | 1..146 | 1..146 | 744 | 100 | Plus |
CG13711-PA | 127 | CG13711-PA | 31..115 | 47..134 | 150 | 37.5 | Plus |