Clone Sequence Records
BO13267.5prime Sequence
669 bp (645 high quality bases) assembled on 2006-05-08
> BO13267.5prime
GAAGTTATCCCTCGACATGGAAAAGTTAATCACAATTTGCCTCCTCCTGA
GGATTCTACAATCGTGTGCTATGCCCATTATTGACCCAGATAGTATAGAC
GAATCCCTTGCGTGTCCACCGTGTGAGAATGACTTTCCCATCTGTTACAA
AGTGATCGTGGAGGTGGAACGGGGCAATGGACTGCCCGGTAGCTGTTGTC
CTCGCTACGAGTGCCTCGATGAGGAACCTGTCTGCGATGGTTCCAAAAGG
AGATTCTATAAGAACAAGTGCACTGTGTGCGATCCTTGCGAACCGCTGGC
CATTCAGTGCAAGGAAATATGTCCAATGGAAGAACCCGAACCCATTTGCC
TGTCTGACAACAATGAGTACCACAGAAATGGCGATATTTGGATGGAAAAC
AATGGTTGTACTACATGCATGTGCGAAGGTGGATATGTCACCCGCAATGC
TGTTCAGTGCAATCATTATTATCGGTGCAACAATCCCGTTGAGGTCAAGG
GACAGTGCTGTCCGGTTTGTCCGGACGAGCTGGGTGTGAGTAACAGTATC
TATGACGATGGTAATCACAAGTATAGAAACACCACTTCAGCACCAATTTT
GGGCGAAAGCGAATCCTCCAGTTCAGGGTGGAGCTCCACTGTGCCAAACA
ATACTTCTGATTCCGTTCC
BO13267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4786-PA | 1359 | CG4786-RA | 1..631 | 17..647 | 3155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd2-RA | 2245 | CG4786-RA | 410..1062 | 17..669 | 3220 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20529155..20529756 | 669..68 | 2965 | 99.5 | Minus |
| 3L | 28110227 | 3L | 20538898..20538949 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:59:23 has no hits.
BO13267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:26 Download gff for
BO13267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4786-PA | 1..653 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:47 Download gff for
BO13267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4786-PA | 1..653 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:37 Download gff for
BO13267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd2-RA | 407..1062 | 14..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:59 Download gff for
BO13267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd2-RA | 407..1062 | 14..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:59 Download gff for
BO13267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20529155..20529755 | 69..669 | 99 | <- | Minus |
| 3L | 20538898..20538952 | 14..68 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:37 Download gff for
BO13267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20522255..20522855 | 69..669 | 99 | <- | Minus |
| arm_3L | 20531998..20532052 | 14..68 | 98 | | Minus |
BO13267.complete Sequence
1390 bp assembled on 2008-08-14
GenBank Submission: FJ632741
> BO13267.complete
GAAGTTATCCCTCGACATGGAAAAGTTAATCACAATTTGCCTCCTCCTGA
GGATTCTACAATCGTGTGCTATGCCCATTATTGACCCAGATAGTATAGAC
GAATCCCTTGCGTGTCCACCGTGTGAGAATGACTTTCCCATCTGTTACAA
AGTGATCGTGGAGGTGGAACGGGGCAATGGACTGCCCGGTAGCTGTTGTC
CTCGCTACGAGTGCCTCGATGAGGAACCTGTCTGCGATGGTTCCAAAAGG
AGATTCTATAAGAACAAGTGCACTGTGTGCGATCCTTGCGAACCGCTGGC
CATTCAGTGCAAGGAAATATGTCCAATGGAAGAACCCGAACCCATTTGCC
TGTCTGACAACAATGAGTACCACAGAAATGGCGATATTTGGATGGAAAAC
AATGGTTGTACTACATGCATGTGCGAAGGTGGATATGTCACCCGCAATGC
TGTTCAGTGCAATCATTATTATCGGTGCAACAATCCCGTTGAGGTCAAGG
GACAGTGCTGTCCGGTTTGTCCGGACGAGCTGGGTGTGAGTAACAGTATC
TATGACGATGGTAATCACAAGTATAGAAACACCACTTCAGCACCAATTTT
GGGCGAAAGCGAATCCTCCAGTTCAGGGTGGAGCTCCACTGTGCCAACAG
ATACTTCTGATTCCGTTCCAGACACCAGCGGTTCACCCAATAGCTCATCT
ACATCATCTGAACTGGCCACACCGACTCCGAACACAAGTGAATTATCCAG
TTCCACAGAGAGGACAAGTACGGATTCGAGTTATGAACAACTTGGAGAAT
TTGCCACTTCCGAGTCGCCGGATCTCAGAACCGACTCAGAAGAACAAGAA
ACCTCAAGTTCTGATTCTGCAATGGAGACTACCACAAATCCAACCACATT
CGAAGCAACAGCAACTTCCACAGTTTCAAGCACTTCAATGGAACTTCCCA
CTGCAACAGATGATGGTATCACCAAAATGGATTTTAATCCTGATGGCAGA
ACACCGAAAGCAACTGATGAGCCCACCGTGATCTTAGTCAATGCAACTAA
CTTCTTATCCGTGGTGACCGATAATCCCATCACGAATCAACCGGCGGTCG
TGGCGCCCGAATCGACCAGTCAGATTAAGGATCTCAACAGTATGGAGATC
CAGCAAATAAGGTATCCCTACGCAGAGGTGCCCCAGGAGCGCATCCAAAC
CGATTGGCCTTTGGAATGCGTGGTTATAATGGGCTTTGTTATACTTATAG
TGTTTATATCCCTTTATGCCATCGTGAAGAGATATTCGAAAAACAAAAAA
TACCATGCCATACCATTAAATCCAGTTCGAAAGCTGAATGAAACGGAGAA
AGCGAAGACGGAGCAAAAGTTGGCAAGCTTTCTAGACCAT
BO13267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd2-RA | 1359 | CG4786-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd2-RA | 2245 | CG4786-RA | 410..1765 | 17..1372 | 6780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20528452..20529756 | 1372..68 | 6525 | 100 | Minus |
| 3L | 28110227 | 3L | 20538898..20538949 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:51 has no hits.
BO13267.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:21 Download gff for
BO13267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4786-RA | 404..1762 | 14..1372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:05 Download gff for
BO13267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd2-RA | 410..1765 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:50 Download gff for
BO13267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4786-RA | 407..1762 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:42 Download gff for
BO13267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd2-RA | 410..1765 | 17..1374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:42 Download gff for
BO13267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20538898..20538949 | 17..68 | 100 | | Minus |
| 3L | 20528449..20529755 | 69..1374 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:05 Download gff for
BO13267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20521549..20522855 | 69..1374 | 99 | <- | Minus |
| arm_3L | 20531998..20532049 | 17..68 | 100 | | Minus |
BO13267.pep Sequence
Translation from 16 to 1390
> BO13267.pep
MEKLITICLLLRILQSCAMPIIDPDSIDESLACPPCENDFPICYKVIVEV
ERGNGLPGSCCPRYECLDEEPVCDGSKRRFYKNKCTVCDPCEPLAIQCKE
ICPMEEPEPICLSDNNEYHRNGDIWMENNGCTTCMCEGGYVTRNAVQCNH
YYRCNNPVEVKGQCCPVCPDELGVSNSIYDDGNHKYRNTTSAPILGESES
SSSGWSSTVPTDTSDSVPDTSGSPNSSSTSSELATPTPNTSELSSSTERT
STDSSYEQLGEFATSESPDLRTDSEEQETSSSDSAMETTTNPTTFEATAT
STVSSTSMELPTATDDGITKMDFNPDGRTPKATDEPTVILVNATNFLSVV
TDNPITNQPAVVAPESTSQIKDLNSMEIQQIRYPYAEVPQERIQTDWPLE
CVVIMGFVILIVFISLYAIVKRYSKNKKYHAIPLNPVRKLNETEKAKTEQ
KLASFLDH
BO13267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd2-PA | 452 | CG4786-PA | 1..452 | 1..452 | 2420 | 100 | Plus |
| CG13252-PA | 384 | CG13252-PA | 116..312 | 34..247 | 170 | 30 | Plus |
