Clone BO13268 Report

Search the DGRC for BO13268

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCanA1-RA
Protein status:BO13268.pep: Imported from assembly
Sequenced Size:1900

Clone Sequence Records

BO13268.3prime Sequence

717 bp (617 high quality bases) assembled on 2006-05-08

> BO13268.3prime
ATGGTCTAGAAAGCTTGCTGGGAACTTCTTGGCGGTGAATCCTGCCCGCA
CATTACTGGTGGTGGCCGATTTCACAGTCGTCCTGCTCGTTTTGGTTACG
GTTGCGGTATCATTACTGCTGGTGTTGCTGATGTCCTTTGTCGTCGTGGT
GCTGCTGGTGTTGCTGTTATTGTTGTTGTTGTTGCTGCTGCTGCTGCTGC
TCCTTGTGACCGTGGTGATGCTGCTGCTGCTGGCACTCATCAAAAGAGGA
CGACGGGGCGGCATCCGTTCGTTGACCGCATCCAGGCCCTTGGCCTCCGC
AAAGGAGTGGATGTGCGAGGATGCGGTCAGTCCTTGCAGAGCCTCCTTGA
GGGAATCCCTTCCGCCGGACAAAGCGCCCACTGGCAGGGCGCCCGTGGGC
GTCAGACCCTTCAGCTGGAGCACGCTCTCGGATTCCTCCCTGAGGATGGA
GAAGACGCGCGACATCTTGCCAATGGCCCGAATCTTATTCCGAATTATCT
CTTTGCGCAGCGCCGACATGGAAGCTGGCTTACTGGGCGTATTATTGTTA
TTGTTATTATTGCTCGCGTTCGCCGGCACGAGCACAATTTTCTTGCGTAG
CTCTTCCTCGAGCTCGTCATCGGGTCCGGCCACCAGTTCATCGTCTGAGC
AAATGTTCAGGATGTTGACTAGCATCTCGGTTACCTTTTTCGCCACGAAG
GGCAACGACCATGTGAA

BO13268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1455-PA 1869 CanA1-RA 1196..1866 689..19 3355 100 Minus
CG9842-PA 1713 Pp2B-14D-RA 1585..1628 300..257 195 97.7 Minus
CG9819-PA 1755 CanA-14F-RA 1609..1652 300..257 195 97.7 Minus
CG9819-PB 1755 CanA-14F-RB 1609..1652 300..257 195 97.7 Minus
CG9842-PA 1713 Pp2B-14D-RA 1462..1502 423..383 155 95.1 Minus
CG9819-PA 1755 CanA-14F-RA 1486..1526 423..383 155 95.1 Minus
CG9819-PB 1755 CanA-14F-RB 1486..1526 423..383 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CanA1-RD 3064 CG1455-RD 1933..2631 717..19 3435 99.6 Minus
CanA1-RA 2628 CG1455-RA 1497..2195 717..19 3435 99.6 Minus
CanA1-RB 2530 CG1455-RB 1590..2097 526..19 2540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31046065..31046388 342..19 1620 100 Minus
3R 32079331 3R 31044202..31044302 442..342 505 100 Minus
X 23542271 X 16557780..16558038 257..515 455 78.4 Plus
3R 32079331 3R 31044052..31044140 527..439 445 100 Minus
X 23542271 X 16566379..16566637 257..515 440 78 Plus
3R 32079331 3R 31043385..31043470 688..603 430 100 Minus
3R 32079331 3R 31043715..31043795 605..525 405 100 Minus
3R 32079331 3R 19040860..19040945 201..116 190 81.4 Minus
Blast to na_te.dros performed 2015-02-12 04:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6885 232..117 301 73.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6912 232..81 271 67.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2429 210..87 253 70.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2421..2544 232..106 249 68.5 Minus

BO13268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:27 Download gff for BO13268.3prime
Subject Subject Range Query Range Percent Splice Strand
CanA1-PA 1170..1869 18..715 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:48 Download gff for BO13268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1455-PA 1170..1869 18..715 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:46:06 Download gff for BO13268.3prime
Subject Subject Range Query Range Percent Splice Strand
CanA1-RA 1497..2195 19..717 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:02 Download gff for BO13268.3prime
Subject Subject Range Query Range Percent Splice Strand
CanA1-RA 1497..2195 19..717 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:02 Download gff for BO13268.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31044205..31044302 342..439 100 -> Minus
3R 31046066..31046388 19..341 100   Minus
3R 31043210..31043242 685..717 91 -> Minus
3R 31043389..31043470 603..684 100 -> Minus
3R 31043718..31043795 525..602 100 -> Minus
3R 31044055..31044139 440..524 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:46:06 Download gff for BO13268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26868932..26868964 685..717 91 -> Minus
arm_3R 26869111..26869192 603..684 100 -> Minus
arm_3R 26869440..26869517 525..602 100 -> Minus
arm_3R 26869777..26869861 440..524 100 -> Minus
arm_3R 26869927..26870024 342..439 100 -> Minus
arm_3R 26871788..26872110 19..341 100   Minus

BO13268.5prime Sequence

759 bp (691 high quality bases) assembled on 2006-05-08

> BO13268.5prime
GAAGTTATCAGTCGACATGTCGGCGACCTCCACGCGAAGTTCGGTGACGA
GGAAATCATCGCTATCAAAAAGTTCTAGTTCAGACAAATCGGCAAAGTCC
TCGTCGAATTCCTCGAAATCTCCGACAGCCGCCAGTGGAAACAAACAGAA
AATGCAGTACACAAAAACCAGGGAGCGCATGGTCGATGATGTTCCACTTC
CGCCCACCCACAAGCTGACCATGTCGGAGGTATACGACGATCCGAAGACC
GGAAAACCCAACTTCGACGCCCTGCGCCAGCACTTTCTGCTGGAGGGGCG
GATCGAGGAGGCGGTGGCCCTGAGGATCATCACCGAAGGAGCCGCCCTGC
TGCGCGAGGAGAAGAACATGATCGACGTGGAGGCACCCATTACCGTGTGC
GGTGACATCCACGGGCAGTTCTTCGATCTCGTAAAGCTCTTCGAAGTGGG
CGGCCCGCCGGCCACCACTAGGTACCTTTTTCTAGGCGACTACGTGGACA
GGGGATACTTCAGTATTGAGTGCGTTCTCTACCTGTGGTCCCTGAAAATA
ACCTACCCCACCACGCTTTCCCTGCTGCGAGGAAATCACGAGTGCAGGCA
TCTCACAGAGTACTTTACCTTCAAGCAGGAATGCATCATCAAGTATTCGG
AAAGTATTTACGACGCCTGCATGGAAGCGTTCGACTGCCTGCCCCTCGCC
GCCCTCCTCAACCAGCAGTTCCTCTGTATTCACGGCGGTCTGTCGCCCGA
GATTTTCAC

BO13268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1455-PA 1869 CanA1-RA 1..743 17..759 3715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
CanA1-RD 3064 CG1455-RD 765..1508 16..759 3720 100 Plus
CanA1-RB 2530 CG1455-RB 309..1052 16..759 3720 100 Plus
CanA1-RA 2628 CG1455-RA 329..1072 16..759 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31041543..31041875 188..520 1665 100 Plus
X 23542271 X 16558593..16559068 753..278 910 79.4 Minus
3R 32079331 3R 31040138..31040310 16..188 865 100 Plus
X 23542271 X 16567192..16567667 753..278 790 77.7 Minus
3R 32079331 3R 31042274..31042404 629..759 640 99.2 Plus
3R 32079331 3R 31041962..31042076 519..633 575 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:56:35 has no hits.

BO13268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:28 Download gff for BO13268.5prime
Subject Subject Range Query Range Percent Splice Strand
CanA1-PA 1..743 17..759 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:49 Download gff for BO13268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1455-PA 1..743 17..759 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:08 Download gff for BO13268.5prime
Subject Subject Range Query Range Percent Splice Strand
CanA1-RA 320..1072 7..759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:54 Download gff for BO13268.5prime
Subject Subject Range Query Range Percent Splice Strand
CanA1-RA 320..1072 7..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:54 Download gff for BO13268.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31040129..31040310 7..188 97 -> Plus
3R 31041544..31041875 189..520 100 -> Plus
3R 31041964..31042075 521..632 100 -> Plus
3R 31042278..31042404 633..759 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:08 Download gff for BO13268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26865851..26866032 7..188 97 -> Plus
arm_3R 26867266..26867597 189..520 100 -> Plus
arm_3R 26867686..26867797 521..632 100 -> Plus
arm_3R 26868000..26868126 633..759 100   Plus

BO13268.complete Sequence

1900 bp assembled on 2008-08-14

GenBank Submission: FJ632742

> BO13268.complete
GAAGTTATCAGTCGACATGTCGGCGACCTCCACGCGAAGTTCGGTGACGA
GGAAATCATCGCTATCAAAAAGTTCTAGTTCAGACAAATCGGCAAAGTCC
TCGTCGAATTCCTCGAAATCTCCGACAGCCGCCAGTGGAAACAAACAGAA
AATGCAGTACACAAAAACCAGGGAGCGCATGGTCGATGATGTTCCACTTC
CGCCCACCCACAAGCTGACCATGTCGGAGGTATACGACGATCCGAAGACC
GGAAAACCCAACTTCGACGCCCTGCGCCAGCACTTTCTGCTGGAGGGGCG
GATCGAGGAGGCGGTGGCCCTGAGGATCATCACCGAAGGAGCCGCCCTGC
TGCGCGAGGAGAAGAACATGATCGACGTGGAGGCACCCATTACCGTGTGC
GGTGACATCCACGGGCAGTTCTTCGATCTCGTAAAGCTCTTCGAAGTGGG
CGGCCCGCCGGCCACCACTAGGTACCTTTTTCTAGGCGACTACGTGGACA
GGGGATACTTCAGTATTGAGTGCGTTCTCTACCTGTGGTCCCTGAAAATA
ACCTACCCCACCACGCTTTCCCTGCTGCGAGGAAATCACGAGTGCAGGCA
TCTCACAGAGTACTTTACCTTCAAGCAGGAATGCATCATCAAGTATTCGG
AAAGTATTTACGACGCCTGCATGGAAGCGTTCGACTGCCTGCCCCTCGCC
GCCCTCCTCAACCAGCAGTTCCTCTGTATTCACGGCGGTCTGTCGCCCGA
GATTTTCACACTCGACGACATCAAGACGCTGAATCGCTTCAGGGAACCAC
CGGCCTACGGGCCCATGTGCGACCTGCTCTGGTCCGATCCTCTGGAGGAC
TTTGGCAACGAGAAGACCAACGAGTTCTTCTCGCACAACTCGGTGCGCGG
GTGCTCCTACTTCTTCAGCTACTCGGCCTGCTGTGAGTTTCTGCAGAAGA
ACAACCTGCTGTCGATAGTCAGGGCGCACGAGGCGCAGGATGCGGGGTAT
CGCATGTATCGGAAGAACCAGGTTACGGGCTTCCCCTCGCTGATCACCAT
ATTCTCCGCCCCCAATTATCTGGATGTTTACAATAACAAGGCAGCTGTGC
TCAAGTACGAGAACAACGTGATGAATATCCGCCAGTTCAACTGCTCGCCA
CATCCCTACTGGCTACCCAACTTCATGGACGTCTTCACATGGTCGCTGCC
CTTCGTGGGCGAAAAGGTAACCGAGATGCTAGTCAACATCCTGAACATTT
GCTCAGACGATGAACTGGTGGCCGGACCCGATGACGAGCTCGAGGAAGAG
CTACGCAAGAAAATTGTGCTCGTGCCGGCGAACGCGAGCAATAATAACAA
TAACAATAATACGCCCAGTAAGCCAGCTTCCATGTCGGCGCTGCGCAAAG
AGATAATTCGGAATAAGATTCGGGCCATTGGCAAGATGTCGCGCGTCTTC
TCCATCCTCAGGGAGGAATCCGAGAGCGTGCTCCAGCTGAAGGGTCTGAC
GCCCACGGGCGCCCTGCCAGTGGGCGCTTTGTCCGGCGGAAGGGATTCCC
TCAAGGAGGCTCTGCAAGGACTGACCGCATCCTCGCACATCCACTCCTTT
GCGGAGGCCAAGGGCCTGGATGCGGTCAACGAACGGATGCCGCCCCGTCG
TCCTCTTTTGATGAGTGCCAGCAGCAGCAGCATCACCACGGTCACAAGGA
GCAGCAGCAGCAGCAGCAACAACAACAACAATAACAGCAACACCAGCAGC
ACCACGACGACAAAGGACATCAGCAACACCAGCAGTAATGATACCGCAAC
CGTAACCAAAACGAGCAGGACGACTGTGAAATCGGCCACCACCAGTAATG
TGCGGGCAGGATTCACCGCCAAGAAGTTCCCAGCAAGCTTTCTAGACCAT

BO13268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CanA1-RD 1869 CG1455-PD 1..1866 17..1882 9330 100 Plus
CanA1-RA 1869 CG1455-PA 1..1866 17..1882 9330 100 Plus
CanA1-RB 1791 CG1455-PB 1..1282 17..1298 6410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
CanA1-RD 3064 CG1455-RD 765..2631 16..1882 9335 100 Plus
CanA1-RA 2628 CG1455-RA 329..2195 16..1882 9335 100 Plus
CanA1-RB 2530 CG1455-RB 309..1591 16..1298 6415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16558086..16559068 1260..278 2155 81.3 Minus
X 23542271 X 16566685..16567667 1260..278 2005 80.3 Minus
3R 32079331 3R 31041543..31041875 188..520 1665 100 Plus
3R 32079331 3R 31046065..31046388 1559..1882 1620 100 Plus
3R 32079331 3R 31042480..31042701 778..999 1110 100 Plus
3R 32079331 3R 31040138..31040310 16..188 865 100 Plus
3R 32079331 3R 31042274..31042423 629..778 735 99.3 Plus
3R 32079331 3R 31043114..31043244 1088..1218 655 100 Plus
3R 32079331 3R 31041962..31042076 519..633 575 100 Plus
3R 32079331 3R 31044202..31044302 1459..1559 505 100 Plus
3R 32079331 3R 31042758..31042853 996..1091 480 100 Plus
X 23542271 X 16557780..16558038 1644..1386 455 78.4 Minus
3R 32079331 3R 31044052..31044140 1374..1462 445 100 Plus
X 23542271 X 16566379..16566637 1644..1386 440 78 Minus
3R 32079331 3R 31043385..31043470 1213..1298 430 100 Plus
3R 32079331 3R 31043715..31043795 1296..1376 405 100 Plus
3R 32079331 3R 19040860..19040945 1700..1785 190 81.4 Plus
Blast to na_te.dros performed 2014-11-27 16:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6885 1669..1784 301 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6912 1669..1820 271 67.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2429 1691..1814 253 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2421..2544 1669..1795 249 68.5 Plus

BO13268.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:45 Download gff for BO13268.complete
Subject Subject Range Query Range Percent Splice Strand
CanA1-RA 318..2193 7..1882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:48 Download gff for BO13268.complete
Subject Subject Range Query Range Percent Splice Strand
CanA1-RA 330..2195 17..1884 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:54:51 Download gff for BO13268.complete
Subject Subject Range Query Range Percent Splice Strand
CanA1-RA 328..2193 17..1884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:45 Download gff for BO13268.complete
Subject Subject Range Query Range Percent Splice Strand
CanA1-RA 330..2195 17..1884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 17:11:45 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 18:50:48 has no hits.

BO13268.pep Sequence

Translation from 16 to 1900

> BO13268.pep
MSATSTRSSVTRKSSLSKSSSSDKSAKSSSNSSKSPTAASGNKQKMQYTK
TRERMVDDVPLPPTHKLTMSEVYDDPKTGKPNFDALRQHFLLEGRIEEAV
ALRIITEGAALLREEKNMIDVEAPITVCGDIHGQFFDLVKLFEVGGPPAT
TRYLFLGDYVDRGYFSIECVLYLWSLKITYPTTLSLLRGNHECRHLTEYF
TFKQECIIKYSESIYDACMEAFDCLPLAALLNQQFLCIHGGLSPEIFTLD
DIKTLNRFREPPAYGPMCDLLWSDPLEDFGNEKTNEFFSHNSVRGCSYFF
SYSACCEFLQKNNLLSIVRAHEAQDAGYRMYRKNQVTGFPSLITIFSAPN
YLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK
VTEMLVNILNICSDDELVAGPDDELEEELRKKIVLVPANASNNNNNNNTP
SKPASMSALRKEIIRNKIRAIGKMSRVFSILREESESVLQLKGLTPTGAL
PVGALSGGRDSLKEALQGLTASSHIHSFAEAKGLDAVNERMPPRRPLLMS
ASSSSITTVTRSSSSSSNNNNNNSNTSSTTTTKDISNTSSNDTATVTKTS
RTTVKSATTSNVRAGFTAKKFPASFLDH

BO13268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CanA1-PD 622 CG1455-PD 1..622 1..622 3220 100 Plus
CanA1-PA 622 CG1455-PA 1..622 1..622 3220 100 Plus
CanA1-PB 596 CG1455-PB 1..596 1..622 3048 95.8 Plus
Pp2B-14D-PB 570 CG9842-PB 24..545 2..545 2105 73.2 Plus
Pp2B-14D-PC 570 CG9842-PC 24..545 2..545 2105 73.2 Plus