Clone Sequence Records
BO13269.3prime Sequence
737 bp (614 high quality bases) assembled on 2006-05-08
> BO13269.3prime
ATGGTCTAGAAAGCTTGCGTGGGGATTCTCCTGGCGATTGGGCTCGATGG
TGACGCGGGCGTAGGGACTGCCGGCACCGACCTTGCGCCGCATGGTGACT
CCCCGATGGGGTCTCAGTCCCATGACGATCAGGTAGATCCCCGCGGCGCT
GAGGGCGATCAGTGAGAGCACCACCAGGCCGTAGGCCCATCTCGGCCAGG
TGTCGCAGCTGAAGGCGTCGCCGCGGGCTGAGGTGACCAGCATGCCACGG
ATGCGGGCCGGCTTGTAGCAGCGCCCGTTGGTTTGGACCGGCAGCTGCTT
CAGCCAGACGAGCTCGCAGTCACACTGCAGCGGCAGACCGTTGAGATCCA
GTTCGGCAAGCTGAGTAAAAATCGGCGCCAGCGTGGAATTAAAGGTGCGC
AGCATAGTGCCGCGAAAGCTCAGCGACCGCAGAGCTCTTTTTTTGGTGGG
GGTGGTCATGATGGGTCCAAAGGCCTCCGCGTCCAAGTGGCTAAGCTGAC
GGCTGTTCTGGAAGCTCAATGTCTCGAGGACATCTACGTGGGTCAGGGAA
TTGGCCACCACCCTCTGGAGCACCGGCATGTCCTCGATAAAAAGTTGGCG
CACCTGGGTGAGATTAGCCGTGTCCTCCGGCAGCAGCTCCTCCAGCAGAT
TGTCGCTAATGTCTAGGCGGAATAAAGTCTCCGGCAGCTGTGTGGGAATC
CGCTTCAACTGGTTTCGACGGAGGGAAAGCTCTTTCA
BO13269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-PA | 1410 | CG4781-RA | 689..1407 | 737..19 | 3570 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-RA | 1557 | CG4781-RA | 716..1434 | 737..19 | 3580 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24640806..24641524 | 19..737 | 3580 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:34:25 has no hits.
BO13269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:29 Download gff for
BO13269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-PA | 690..1410 | 18..736 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:50 Download gff for
BO13269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-PA | 690..1410 | 18..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:00:00 Download gff for
BO13269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 717..1434 | 19..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:52 Download gff for
BO13269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 717..1434 | 19..736 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:52 Download gff for
BO13269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24640806..24641523 | 19..736 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:00:00 Download gff for
BO13269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20528329..20529046 | 19..736 | 99 | | Plus |
BO13269.5prime Sequence
778 bp (727 high quality bases) assembled on 2006-05-08
> BO13269.5prime
GAAGTTATCAGTCGACATGGCGAGGTTGGAAGTTATAAGAGGGCTGACCT
TTGCCCTGCTGCTGACGCAGTTGCTGGCAGCCCACGTCGCCCGGGCGGAG
GTCATCGATGCGGAGGAGACGGATCGCTTCTGCTACCCGGAGTCCTCGAA
GAACTCCCGGCGGTCCTGTGAGTGCAGCAACGTGAGTGCTTCTCCCTGGG
GAAACCGAGCCCTGCGCATCGACTGCAGCTACAAGGACTACAAGGTGGCG
GATCTCTCCCTGCTGCTGCCACTGTACATCGACTCCCTGGACCTGTCCTG
GAACGCCCTGGACTCAGTACCGATCTTCACTAGCGACAGTCTGCACCAGC
TGAACCTGAGGCACAACAACATTTCGCAGTTGGTGTCCGGAAACTTCAAG
CAACTGACCAGTTTGAGGGAGCTGTATCTGGGCTGGAACAGCATTGGCAA
ACTAGAGTCCGGATCTTTTGACGGATTGCCACATCTGCAGGTCCTTGACC
TAGCCCACAACAATCTGCACTTGCTGCCCGGTCATCTTTTTGCCCCGCTT
TTGGTCCTGGGCACCTTGGACATCTCTTGGAATCGACGCTTCAACGAGTC
TGGCGGGGATCTATACACCGGACTCGGGGTGAACTGGAAACTCTCCACCT
TAAGACTGGACGCTTGTAGCCTAAATGATCTTCACCTGCCCGTAAATGCA
CCTCTGAAAGAGCTTTCCCTCCGTCGAAACCAGTTGAAGCGGATTCCCAC
ACAGCTGCCGGAGACTTTACTCCGCCTA
BO13269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-PA | 1410 | CG4781-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-RA | 1557 | CG4781-RA | 28..789 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24641451..24642212 | 778..17 | 3810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:51:27 has no hits.
BO13269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:30 Download gff for
BO13269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:52 Download gff for
BO13269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:17:46 Download gff for
BO13269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 28..788 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:31 Download gff for
BO13269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 28..788 | 17..777 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:31 Download gff for
BO13269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24641452..24642212 | 17..777 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:17:46 Download gff for
BO13269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20528975..20529735 | 17..777 | 100 | | Minus |
BO13269.complete Sequence
1441 bp assembled on 2007-06-22
GenBank Submission: FJ632743
> BO13269.complete
GAAGTTATCAGTCGACATGGCGAGGTTGGAAGTTATAAGAGGGCTGACCT
TTGCCCTGCTGCTGACGCAGTTGCTGGCAGCCCACGTCGCCCGGGCGGAG
GTCATCGATGCGGAGGAGACGGATCGCTTCTGCTACCCGGAGTCCTCGAA
GAACTCCCGGCGGTCCTGTGAGTGCAGCAACGTGAGTGCTTCTCCCTGGG
GAAACCGAGCCCTGCGCATCGACTGCAGCTACAAGGACTACAAGGTGGCG
GATCTCTCCCTGCTGCTGCCACTGTACATCGACTCCCTGGACCTGTCCTG
GAACGCCCTGGACTCAGTACCGATCTTCACTAGCGACAGTCTGCACCAGC
TGAACCTGAGGCACAACAACATTTCGCAGTTGGTGTCCGGAAACTTCAAG
CAACTGACCAGTTTGAGGGAGCTGTATCTGGGCTGGAACAGCATTGGCAA
ACTAGAGTCCGGATCTTTTGACGGATTGCCACATCTGCAGGTCCTTGACC
TAGCCCACAACAATCTGCACTTGCTGCCCGGTCATCTTTTTGCCCCGCTT
TTGGTCCTGGGCACCTTGGACATCTCTTGGAATCGACGCTTCAACGAGTC
TGGCGGGGATCTATACACCGGACTCGGGGTGAACTGGAAACTCTCCACCT
TAAGACTGGACGCTTGTAGCCTAAATGATCTTCACCTGCCCGTAAATGCA
CCTCTGAAAGAGCTTTCCCTCCGTCGAAACCAGTTGAAGCGGATTCCCAC
ACAGCTGCCGGAGACTTTACTCCGCCTAGACATTAGCGACAATCTGCTGG
AGGAGCTGCTGCCGGAGGACACGGCTAATCTCACCCAGGTGCGCCAACTT
TTTATCGAGGACATGCCGGTGCTCCAGAGGGTGGTGGCCAATTCCCTGAC
CCACGTAGATGTCCTCGAGACATTGAGCTTCCAGAACAGCCGTCAGCTTA
GCCACTTGGACGCGGAGGCCTTTGGACCCATCATGACCACCCCCACCAAA
AAAAGAGCTCTGCGGTCGCTGAGCTTTCGCGGCACTATGCTGCGCACCTT
TAATTCCACGCTGGCGCCGATTTTTACTCAGCTTGCCGAACTGGATCTCA
ACGGTCTGCCGCTGCAGTGTGACTGCGAGCTCGTCTGGCTGAAGCAGCTG
CCGGTCCAAACCAACGGGCGCTGCTACAAGCCGGCCCGCATCCGTGGCAT
GCTGGTCACCTCAGCCCGCGGCGACGCCTTCAGCTGCGACACCTGGCCGA
GATGGGCCTACGGCCTGGTGGTGCTCTCACTGATCGCCCTCAGCGCCGCG
GGGATCTACCTGATCGTCATGGGACTGAGACCCCATCGGGGAGTCACCAT
GCGGCGCAAGGTCGGTGCCGGCAGTCCCTACGCCCGCGTCACCATCGAGC
CCAATCGCCAGGAGAATCCCCACGCAAGCTTTCTAGACCAT
BO13269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-RA | 1410 | CG4781-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-RA | 1557 | CG4781-RA | 28..1434 | 17..1423 | 7035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24640806..24642212 | 1423..17 | 7035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:11:23 has no hits.
BO13269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:11 Download gff for
BO13269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 1..1410 | 17..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:44 Download gff for
BO13269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 26..1432 | 17..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:38 Download gff for
BO13269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 28..1434 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:12 Download gff for
BO13269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 26..1432 | 17..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:59 Download gff for
BO13269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4781-RA | 28..1434 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:59 Download gff for
BO13269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24640804..24642212 | 17..1425 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:38 Download gff for
BO13269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20528327..20529735 | 17..1425 | 99 | | Minus |
BO13269.pep Sequence
Translation from 16 to 1441
> BO13269.pep
MARLEVIRGLTFALLLTQLLAAHVARAEVIDAEETDRFCYPESSKNSRRS
CECSNVSASPWGNRALRIDCSYKDYKVADLSLLLPLYIDSLDLSWNALDS
VPIFTSDSLHQLNLRHNNISQLVSGNFKQLTSLRELYLGWNSIGKLESGS
FDGLPHLQVLDLAHNNLHLLPGHLFAPLLVLGTLDISWNRRFNESGGDLY
TGLGVNWKLSTLRLDACSLNDLHLPVNAPLKELSLRRNQLKRIPTQLPET
LLRLDISDNLLEELLPEDTANLTQVRQLFIEDMPVLQRVVANSLTHVDVL
ETLSFQNSRQLSHLDAEAFGPIMTTPTKKRALRSLSFRGTMLRTFNSTLA
PIFTQLAELDLNGLPLQCDCELVWLKQLPVQTNGRCYKPARIRGMLVTSA
RGDAFSCDTWPRWAYGLVVLSLIALSAAGIYLIVMGLRPHRGVTMRRKVG
AGSPYARVTIEPNRQENPHASFLDH
BO13269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4781-PA | 469 | CG4781-PA | 1..469 | 1..469 | 2426 | 100 | Plus |
| caps-PB | 540 | CG11282-PB | 100..465 | 68..427 | 242 | 26.7 | Plus |
| caps-PA | 540 | CG11282-PA | 100..465 | 68..427 | 242 | 26.7 | Plus |
| caps-PD | 780 | CG11282-PD | 100..465 | 68..427 | 242 | 26.7 | Plus |
| caps-PE | 811 | CG11282-PE | 100..465 | 68..427 | 242 | 26.7 | Plus |
