Clone Sequence Records
BO13270.3prime Sequence
539 bp (538 high quality bases) assembled on 2006-05-08
> BO13270.3prime
ATGGTCTAGAAAGCTTGCTGGCATGAGCAGCTCAATGTTCGGATTCTGGA
TCTCCAGGAATATCTGGTACTGCGAGAAGACCACCAGCCAGCAATAGATA
TTGTAGGCTACCCAAACGAAGTTCAAAAGGGCCGAGAAGGTTTGCTCCAG
ATAAATATAGTAGCCTCCAATAAGCCAAAGGCTCCAGCTAAACTGGAAGA
GAATGGCTAGTCCAATTAGACCCAGCCAGGGTAGCAGCCATCCTCGAGTG
CTGATCTTAATACCGTAGTAGACCAAATAGGAAGACAGGATGATTAGCAG
GAAGTAGATGATAAAGAAGCCACCTGCCACGGGCATCGACGAACGTATAT
CCGTCTCAAAGAGCGGGGAATAGAGCTGCGCAGACTCCCCGCCTGCTAGC
ATATACGAAATCAGCGTGATCATTACGGCGGATAGCGCAGCCGTATAGCC
GGCCACGGCATAGCTTCCCGTCCGGACATTATCCGACCAAATTATGGGCG
ACCAGCAGGAGCTCAGCACTACCATGTCGACTGATAACT
BO13270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-PA | 510 | CG7713-RA | 1..507 | 525..19 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-RB | 874 | CG7713-RB | 124..632 | 527..19 | 2545 | 100 | Minus |
CG7713-RA | 816 | CG7713-RA | 66..574 | 527..19 | 2545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17795363..17795639 | 527..251 | 1385 | 100 | Minus |
3R | 32079331 | 3R | 17795697..17795800 | 254..151 | 520 | 100 | Minus |
3R | 32079331 | 3R | 17795995..17796075 | 99..19 | 405 | 100 | Minus |
3R | 32079331 | 3R | 17795863..17795913 | 150..100 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:20:12 has no hits.
BO13270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:31 Download gff for
BO13270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-PA | 1..510 | 16..525 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:54 Download gff for
BO13270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-PA | 1..510 | 16..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:29 Download gff for
BO13270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 71..583 | 19..532 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:15 Download gff for
BO13270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 62..574 | 19..532 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:15 Download gff for
BO13270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17795358..17795639 | 251..533 | 99 | -> | Minus |
3R | 17795701..17795800 | 151..250 | 100 | -> | Minus |
3R | 17795863..17795913 | 100..150 | 100 | -> | Minus |
3R | 17795995..17796075 | 19..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:29 Download gff for
BO13270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13621080..13621361 | 251..533 | 99 | -> | Minus |
arm_3R | 13621423..13621522 | 151..250 | 100 | -> | Minus |
arm_3R | 13621585..13621635 | 100..150 | 100 | -> | Minus |
arm_3R | 13621717..13621797 | 19..99 | 100 | | Minus |
BO13270.5prime Sequence
539 bp (538 high quality bases) assembled on 2006-05-08
> BO13270.5prime
GAAGTTATCAGTCGACATGGTAGTGCTGAGCTCCTGCTGGTCGCCCATAA
TTTGGTCGGATAATGTCCGGACGGGAAGCTATGCCGTGGCCGGCTATACG
GCTGCGCTATCCGCCGTAATGATCACGCTGATTTCGTATATGCTAGCAGG
CGGGGAGTCTGCGCAGCTCTATTCCCCGCTCTTTGAGACGGATATACGTT
CGTCGATGCCCGTGGCAGGTGGCTTCTTTATCATCTACTTCCTGCTAATC
ATCCTGTCTTCCTATTTGGTCTACTACGGTATTAAGATCAGCACTCGAGG
ATGGCTGCTACCCTGGCTGGGTCTAATTGGACTAGCCATTCTCTTCCAGT
TTAGCTGGAGCCTTTGGCTTATTGGAGGCTACTATATTTATCTGGAGCAA
ACCTTCTCGGCCCTTTTGAACTTCGTTTGGGTAGCCTACAATATCTATTG
CTGGCTGGTGGTCTTCTCGCAGTACCAGATATTCCTGGAGATCCAGAATC
CGAACATTGAGCTGCTCATGCCAGCAAGCTTTCTAGACC
BO13270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-PA | 510 | CG7713-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-RB | 874 | CG7713-RB | 124..632 | 15..523 | 2545 | 100 | Plus |
CG7713-RA | 816 | CG7713-RA | 66..574 | 15..523 | 2545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17795363..17795639 | 15..291 | 1385 | 100 | Plus |
3R | 32079331 | 3R | 17795697..17795800 | 288..391 | 520 | 100 | Plus |
3R | 32079331 | 3R | 17795995..17796075 | 443..523 | 405 | 100 | Plus |
3R | 32079331 | 3R | 17795863..17795913 | 392..442 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:46:17 has no hits.
BO13270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:32 Download gff for
BO13270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-PA | 1..510 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:55 Download gff for
BO13270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-PA | 1..510 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:56 Download gff for
BO13270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 71..583 | 10..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:21 Download gff for
BO13270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 62..574 | 10..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:21 Download gff for
BO13270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17795358..17795639 | 9..291 | 99 | -> | Plus |
3R | 17795701..17795800 | 292..391 | 100 | -> | Plus |
3R | 17795863..17795913 | 392..442 | 100 | -> | Plus |
3R | 17795995..17796075 | 443..523 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:56 Download gff for
BO13270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13621080..13621361 | 9..291 | 99 | -> | Plus |
arm_3R | 13621423..13621522 | 292..391 | 100 | -> | Plus |
arm_3R | 13621585..13621635 | 392..442 | 100 | -> | Plus |
arm_3R | 13621717..13621797 | 443..523 | 100 | | Plus |
BO13270.complete Sequence
541 bp assembled on 2006-10-11
GenBank Submission: FJ632744
> BO13270.complete
GAAGTTATCAGTCGACATGGTAGTGCTGAGCTCCTGCTGGTCGCCCATAA
TTTGGTCGGATAATGTCCGGACGGGAAGCTATGCCGTGGCCGGCTATACG
GCTGCGCTATCCGCCGTAATGATCACGCTGATTTCGTATATGCTAGCAGG
CGGGGAGTCTGCGCAGCTCTATTCCCCGCTCTTTGAGACGGATATACGTT
CGTCGATGCCCGTGGCAGGTGGCTTCTTTATCATCTACTTCCTGCTAATC
ATCCTGTCTTCCTATTTGGTCTACTACGGTATTAAGATCAGCACTCGAGG
ATGGCTGCTACCCTGGCTGGGTCTAATTGGACTAGCCATTCTCTTCCAGT
TTAGCTGGAGCCTTTGGCTTATTGGAGGCTACTATATTTATCTGGAGCAA
ACCTTCTCGGCCCTTTTGAACTTCGTTTGGGTAGCCTACAATATCTATTG
CTGGCTGGTGGTCTTCTCGCAGTACCAGATATTCCTGGAGATCCAGAATC
CGAACATTGAGCTGCTCATGCCAGCAAGCTTTCTAGACCAT
BO13270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-RB | 510 | CG7713-PB | 1..507 | 17..523 | 2535 | 100 | Plus |
CG7713-RA | 510 | CG7713-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-RB | 874 | CG7713-RB | 124..632 | 15..523 | 2545 | 100 | Plus |
CG7713-RA | 816 | CG7713-RA | 66..574 | 15..523 | 2545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17795363..17795639 | 15..291 | 1385 | 100 | Plus |
3R | 32079331 | 3R | 17795697..17795800 | 288..391 | 520 | 100 | Plus |
3R | 32079331 | 3R | 17795995..17796075 | 443..523 | 405 | 100 | Plus |
3R | 32079331 | 3R | 17795863..17795913 | 392..442 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:53:56 has no hits.
BO13270.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:53 Download gff for
BO13270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 1..510 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:56 Download gff for
BO13270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 71..583 | 10..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:37 Download gff for
BO13270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 77..583 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:53 Download gff for
BO13270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 71..583 | 10..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:42 Download gff for
BO13270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7713-RA | 68..574 | 17..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:42 Download gff for
BO13270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17795995..17796075 | 443..525 | 97 | | Plus |
3R | 17795365..17795639 | 17..291 | 100 | -> | Plus |
3R | 17795701..17795800 | 292..391 | 100 | -> | Plus |
3R | 17795863..17795913 | 392..442 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:37 Download gff for
BO13270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13621087..13621361 | 17..291 | 100 | -> | Plus |
arm_3R | 13621423..13621522 | 292..391 | 100 | -> | Plus |
arm_3R | 13621585..13621635 | 392..442 | 100 | -> | Plus |
arm_3R | 13621717..13621797 | 443..525 | 97 | | Plus |
BO13270.pep Sequence
Translation from 16 to 541
> BO13270.pep
MVVLSSCWSPIIWSDNVRTGSYAVAGYTAALSAVMITLISYMLAGGESAQ
LYSPLFETDIRSSMPVAGGFFIIYFLLIILSSYLVYYGIKISTRGWLLPW
LGLIGLAILFQFSWSLWLIGGYYIYLEQTFSALLNFVWVAYNIYCWLVVF
SQYQIFLEIQNPNIELLMPASFLDH
BO13270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7713-PB | 169 | CG7713-PB | 1..169 | 1..169 | 886 | 100 | Plus |
CG7713-PA | 169 | CG7713-PA | 1..169 | 1..169 | 886 | 100 | Plus |