Clone BO13270 Report

Search the DGRC for BO13270

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG7713-RA
Protein status:BO13270.pep: validated full length
Sequenced Size:541

Clone Sequence Records

BO13270.3prime Sequence

539 bp (538 high quality bases) assembled on 2006-05-08

> BO13270.3prime
ATGGTCTAGAAAGCTTGCTGGCATGAGCAGCTCAATGTTCGGATTCTGGA
TCTCCAGGAATATCTGGTACTGCGAGAAGACCACCAGCCAGCAATAGATA
TTGTAGGCTACCCAAACGAAGTTCAAAAGGGCCGAGAAGGTTTGCTCCAG
ATAAATATAGTAGCCTCCAATAAGCCAAAGGCTCCAGCTAAACTGGAAGA
GAATGGCTAGTCCAATTAGACCCAGCCAGGGTAGCAGCCATCCTCGAGTG
CTGATCTTAATACCGTAGTAGACCAAATAGGAAGACAGGATGATTAGCAG
GAAGTAGATGATAAAGAAGCCACCTGCCACGGGCATCGACGAACGTATAT
CCGTCTCAAAGAGCGGGGAATAGAGCTGCGCAGACTCCCCGCCTGCTAGC
ATATACGAAATCAGCGTGATCATTACGGCGGATAGCGCAGCCGTATAGCC
GGCCACGGCATAGCTTCCCGTCCGGACATTATCCGACCAAATTATGGGCG
ACCAGCAGGAGCTCAGCACTACCATGTCGACTGATAACT

BO13270.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7713-PA 510 CG7713-RA 1..507 525..19 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7713-RB 874 CG7713-RB 124..632 527..19 2545 100 Minus
CG7713-RA 816 CG7713-RA 66..574 527..19 2545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17795363..17795639 527..251 1385 100 Minus
3R 32079331 3R 17795697..17795800 254..151 520 100 Minus
3R 32079331 3R 17795995..17796075 99..19 405 100 Minus
3R 32079331 3R 17795863..17795913 150..100 255 100 Minus
Blast to na_te.dros performed on 2015-02-06 12:20:12 has no hits.

BO13270.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:31 Download gff for BO13270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7713-PA 1..510 16..525 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:54 Download gff for BO13270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7713-PA 1..510 16..525 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:29 Download gff for BO13270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 71..583 19..532 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:15 Download gff for BO13270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 62..574 19..532 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:15 Download gff for BO13270.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17795358..17795639 251..533 99 -> Minus
3R 17795701..17795800 151..250 100 -> Minus
3R 17795863..17795913 100..150 100 -> Minus
3R 17795995..17796075 19..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:29 Download gff for BO13270.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13621080..13621361 251..533 99 -> Minus
arm_3R 13621423..13621522 151..250 100 -> Minus
arm_3R 13621585..13621635 100..150 100 -> Minus
arm_3R 13621717..13621797 19..99 100   Minus

BO13270.5prime Sequence

539 bp (538 high quality bases) assembled on 2006-05-08

> BO13270.5prime
GAAGTTATCAGTCGACATGGTAGTGCTGAGCTCCTGCTGGTCGCCCATAA
TTTGGTCGGATAATGTCCGGACGGGAAGCTATGCCGTGGCCGGCTATACG
GCTGCGCTATCCGCCGTAATGATCACGCTGATTTCGTATATGCTAGCAGG
CGGGGAGTCTGCGCAGCTCTATTCCCCGCTCTTTGAGACGGATATACGTT
CGTCGATGCCCGTGGCAGGTGGCTTCTTTATCATCTACTTCCTGCTAATC
ATCCTGTCTTCCTATTTGGTCTACTACGGTATTAAGATCAGCACTCGAGG
ATGGCTGCTACCCTGGCTGGGTCTAATTGGACTAGCCATTCTCTTCCAGT
TTAGCTGGAGCCTTTGGCTTATTGGAGGCTACTATATTTATCTGGAGCAA
ACCTTCTCGGCCCTTTTGAACTTCGTTTGGGTAGCCTACAATATCTATTG
CTGGCTGGTGGTCTTCTCGCAGTACCAGATATTCCTGGAGATCCAGAATC
CGAACATTGAGCTGCTCATGCCAGCAAGCTTTCTAGACC

BO13270.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7713-PA 510 CG7713-RA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7713-RB 874 CG7713-RB 124..632 15..523 2545 100 Plus
CG7713-RA 816 CG7713-RA 66..574 15..523 2545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17795363..17795639 15..291 1385 100 Plus
3R 32079331 3R 17795697..17795800 288..391 520 100 Plus
3R 32079331 3R 17795995..17796075 443..523 405 100 Plus
3R 32079331 3R 17795863..17795913 392..442 255 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:46:17 has no hits.

BO13270.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:32 Download gff for BO13270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7713-PA 1..510 17..526 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:55 Download gff for BO13270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7713-PA 1..510 17..526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:56 Download gff for BO13270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 71..583 10..523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:21 Download gff for BO13270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 62..574 10..523 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:21 Download gff for BO13270.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17795358..17795639 9..291 99 -> Plus
3R 17795701..17795800 292..391 100 -> Plus
3R 17795863..17795913 392..442 100 -> Plus
3R 17795995..17796075 443..523 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:56 Download gff for BO13270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13621080..13621361 9..291 99 -> Plus
arm_3R 13621423..13621522 292..391 100 -> Plus
arm_3R 13621585..13621635 392..442 100 -> Plus
arm_3R 13621717..13621797 443..523 100   Plus

BO13270.complete Sequence

541 bp assembled on 2006-10-11

GenBank Submission: FJ632744

> BO13270.complete
GAAGTTATCAGTCGACATGGTAGTGCTGAGCTCCTGCTGGTCGCCCATAA
TTTGGTCGGATAATGTCCGGACGGGAAGCTATGCCGTGGCCGGCTATACG
GCTGCGCTATCCGCCGTAATGATCACGCTGATTTCGTATATGCTAGCAGG
CGGGGAGTCTGCGCAGCTCTATTCCCCGCTCTTTGAGACGGATATACGTT
CGTCGATGCCCGTGGCAGGTGGCTTCTTTATCATCTACTTCCTGCTAATC
ATCCTGTCTTCCTATTTGGTCTACTACGGTATTAAGATCAGCACTCGAGG
ATGGCTGCTACCCTGGCTGGGTCTAATTGGACTAGCCATTCTCTTCCAGT
TTAGCTGGAGCCTTTGGCTTATTGGAGGCTACTATATTTATCTGGAGCAA
ACCTTCTCGGCCCTTTTGAACTTCGTTTGGGTAGCCTACAATATCTATTG
CTGGCTGGTGGTCTTCTCGCAGTACCAGATATTCCTGGAGATCCAGAATC
CGAACATTGAGCTGCTCATGCCAGCAAGCTTTCTAGACCAT

BO13270.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7713-RB 510 CG7713-PB 1..507 17..523 2535 100 Plus
CG7713-RA 510 CG7713-PA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7713-RB 874 CG7713-RB 124..632 15..523 2545 100 Plus
CG7713-RA 816 CG7713-RA 66..574 15..523 2545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17795363..17795639 15..291 1385 100 Plus
3R 32079331 3R 17795697..17795800 288..391 520 100 Plus
3R 32079331 3R 17795995..17796075 443..523 405 100 Plus
3R 32079331 3R 17795863..17795913 392..442 255 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:53:56 has no hits.

BO13270.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:53 Download gff for BO13270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 1..510 17..526 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:56 Download gff for BO13270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 71..583 10..523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:37 Download gff for BO13270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 77..583 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:53 Download gff for BO13270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 71..583 10..523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:42 Download gff for BO13270.complete
Subject Subject Range Query Range Percent Splice Strand
CG7713-RA 68..574 17..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:42 Download gff for BO13270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17795995..17796075 443..525 97   Plus
3R 17795365..17795639 17..291 100 -> Plus
3R 17795701..17795800 292..391 100 -> Plus
3R 17795863..17795913 392..442 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:37 Download gff for BO13270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13621087..13621361 17..291 100 -> Plus
arm_3R 13621423..13621522 292..391 100 -> Plus
arm_3R 13621585..13621635 392..442 100 -> Plus
arm_3R 13621717..13621797 443..525 97   Plus

BO13270.pep Sequence

Translation from 16 to 541

> BO13270.pep
MVVLSSCWSPIIWSDNVRTGSYAVAGYTAALSAVMITLISYMLAGGESAQ
LYSPLFETDIRSSMPVAGGFFIIYFLLIILSSYLVYYGIKISTRGWLLPW
LGLIGLAILFQFSWSLWLIGGYYIYLEQTFSALLNFVWVAYNIYCWLVVF
SQYQIFLEIQNPNIELLMPASFLDH

BO13270.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7713-PB 169 CG7713-PB 1..169 1..169 886 100 Plus
CG7713-PA 169 CG7713-PA 1..169 1..169 886 100 Plus