Clone BO13271 Report

Search the DGRC for BO13271

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG30438-RB
Protein status:BO13271.pep: Imported from assembly
Sequenced Size:1606

Clone Sequence Records

BO13271.3prime Sequence

771 bp (727 high quality bases) assembled on 2006-05-08

> BO13271.3prime
ATGGTCTAGAAAGCTTGCAACCTTCTTTGACTTCGTTTTTGCTATTGTAA
TAAAAGGAGCCATAAGGGAATAAAGACTCCGCACCTTCTCGTATGGAAAA
TCAATGCGCCTCAGTGCTAAGATCAGGACGTAAAGTAAAATTAAATAAAC
CGCAACTACGTCGAGTAAGTAGTATTGCCACCATGTCATATTTCGGGATG
GAGTCTGTAGATGATAAGCGCCATTATGTCGCAGCACATATTCGGTCCAG
TATATGGCAGTATCTAGCGCTGTTGAGCGCTGGTCCAGGAACAGCTTTTG
CCGATGTCGTGCTGAATTTCTGTAGCGAGGATTGTGAATCACTTTCATAA
TAGCCTTGTACAACTGATTGGCTGACAGCGTCTGAAGATCTAACTTTATT
GCATATCCATCGACCTCGGCCTTGGCTGAGTTAACATCGTGGTCGCAGAA
TACCGGCATTGTAACAACGGGTACTCCGTGATATACCGTCTCAAACATGC
TTAGCAAGCCTCCATGTGTTACAAACGCTCTAAGCTTGGGATGTCCCAAA
ATGTCCTGCTGCGGTAACCACCGTGAAAGTTTTACGTTTGATGTGATGTC
TTTTATATCTGTCGAACTGCCTTCATACTTCCATAGCACATGATAGGGAA
GACGTGCAAAGGTCTTTACAAGCATGTGACGCAACGCCTCTGGCATGTTC
GCGGCCTTTACGGAGGAACCCATAAAAACGTAAATAAATCCAGATGCTCC
AGAAACACCGATGAATTCCTC

BO13271.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-PA 1308 CG30438-RA 553..1302 771..22 3700 99.7 Minus
CG30438-PB 1575 CG30438-RB 820..1569 771..22 3700 99.7 Minus
CG30438-PC 1575 CG30438-RC 820..1569 771..22 3700 99.7 Minus
CG30438-PD 1575 CG30438-RD 820..1569 771..22 3700 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-RE 2226 CG30438-RE 924..1673 771..22 3720 99.7 Minus
CG30438-RD 2310 CG30438-RD 1008..1757 771..22 3720 99.7 Minus
CG30438-RC 2732 CG30438-RC 1430..2179 771..22 3720 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5548189..5548775 771..185 2905 99.7 Minus
2R 25286936 2R 5548828..5548990 184..22 815 100 Minus
2R 25286936 2R 5267417..5267669 330..591 780 87.4 Plus
2R 25286936 2R 5267673..5267723 621..671 210 94.1 Plus
Blast to na_te.dros performed on 2015-02-03 07:13:19 has no hits.

BO13271.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:33 Download gff for BO13271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-PD 820..1575 15..771 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:57 Download gff for BO13271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-PD 820..1575 15..771 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:48 Download gff for BO13271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 1430..2185 15..771 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:44:09 Download gff for BO13271.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 1430..2185 15..771 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:44:09 Download gff for BO13271.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5548189..5548775 185..771 99 -> Minus
2R 5548828..5548996 15..184 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:48 Download gff for BO13271.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1436333..1436501 15..184 98   Minus
arm_2R 1435694..1436280 185..771 99 -> Minus

BO13271.5prime Sequence

821 bp (757 high quality bases) assembled on 2006-05-08

> BO13271.5prime
GAAGTTATCCCCCTACATGCTTAAAAAAATTGCATTGTTTCTTATTATCT
GGAGTTGCGGCACATTGGCTGCGGACATCCTAATGGCTACGCAAGGCGGA
ACGAAGTCACACAAGATACCATTCTGGGAATTGGCTAAGGGATTAATATC
CAGAGGTCACAATATTACCTTTTTAAGTGGATTTCCTGCTGATTTTAATA
TTGAAGGACTGCTCGAGGTAACACCAGCTGGTCTTGTTGAATATATCCAC
AACTATACGAATTGGGATCTCTTGGGCTCACGCATGGCGGGAGAAATGCC
CATTAAGCCCTGGGACGGACTGCGATACGCTTTCGAATCATGTGACGCAA
TGCTTCGTGACTCAGAAACAAAGGAGCTGACCAAGAAAAGCTTTGATTTG
GCTATATTAGATGGAGCTTTCCCAGAGTGCTTCTTGGGATTAATGTACGA
CTTCAAGATTCCATTTATGTACATAAACACGGTGGGATTCTACACAGGCA
GTATCTCGACTGCAGGAAATCCCGTTAGCTACGCTATTACTCCCAACTTC
TATTCTCGATTTACGGACACACTGAATCTTTACGAACGTGCTATTAATAC
GGCCATGCAGATTGGACAAACACTGATGCACATGTATGTTATGCGTCGGA
CTCACCTTGTGATGCGAGAGCACTTGGGTACTCAAATCCCGCATCCTTAC
GAAATGTCGCGCAACGTGAGTTTCATTTTGCAAAATGGACACGCAGTTTT
GTCTTATCCTAGAGCCTTTAATCCGAATGTAACAGAAGTGGCTTTGCTTC
ATTGTAGGCCAGCTAGAAAAC

BO13271.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-PB 1575 CG30438-RB 1..778 17..794 3840 99.7 Plus
CG30438-PC 1575 CG30438-RC 1..778 17..794 3840 99.7 Plus
CG30438-PD 1575 CG30438-RD 1..778 17..794 3840 99.7 Plus
CG30438-PA 1308 CG30438-RA 1..511 284..794 2505 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-RE 2226 CG30438-RE 103..909 15..821 3960 99.5 Plus
CG30438-RD 2310 CG30438-RD 187..993 15..821 3960 99.5 Plus
CG30438-RC 2732 CG30438-RC 609..1415 15..821 3960 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5547628..5547924 338..634 1470 99.7 Plus
2R 25286936 2R 5539243..5539429 151..337 935 100 Plus
2R 25286936 2R 5547987..5548174 634..821 880 97.9 Plus
2R 25286936 2R 5267807..5268042 591..338 740 87 Minus
2R 25286936 2R 5527295..5527376 15..96 410 100 Plus
2R 25286936 2R 5528754..5528813 94..153 300 100 Plus
Blast to na_te.dros performed 2015-02-04 02:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 5125..5221 136..229 108 59.8 Plus

BO13271.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:34 Download gff for BO13271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-PD 1..805 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:58 Download gff for BO13271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-PD 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:36 Download gff for BO13271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 602..1415 7..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:57 Download gff for BO13271.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 602..1415 7..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:57 Download gff for BO13271.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5527295..5527375 15..95 100 -> Plus
2R 5528756..5528813 96..153 100 -> Plus
2R 5539246..5539429 154..337 100 -> Plus
2R 5547628..5547924 338..634 99 -> Plus
2R 5547988..5548174 635..821 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:36 Download gff for BO13271.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1414800..1414880 15..95 100 -> Plus
arm_2R 1416261..1416318 96..153 100 -> Plus
arm_2R 1426751..1426934 154..337 100 -> Plus
arm_2R 1435133..1435429 338..634 99 -> Plus
arm_2R 1435493..1435679 635..821 98   Plus

BO13271.complete Sequence

1606 bp assembled on 2008-08-14

GenBank Submission: FJ632745

> BO13271.complete
GAAGTTATCAGTCGACATGCTTAAAAAAATTGCATTGTTTCTTATTATCT
GGAGTTGCGGCACATTGGCTGCGGACATCCTAATGGCTACGCAAGGCGGA
ACGAAGTCACACAAGATACCATTCTGGGAATTGGCTAAGGGATTAATATC
CAGAGGTCACAATATTACCTTTTTAAGTGGATTTCCTGCTGATTTTAATA
TTGAAGGACTGCTCGAGGTAACACCAGCTGGTCTTGTTGAATATATCCAC
AACTATACGAATTGGGATCTCTTGGGCTCACGCATGGCGGGAGAAATGCC
CATTAAGCCCTGGGACGGACTGCGATACGCTTTCGAATCATGTGACGCAA
TGCTTCGTGACTCAGAAACAAAGGAGCTGACCAAGAAAAGCTTTGATTTG
GCTATATTAGATGGAGCTTTCCCAGAGTGCTTCTTGGGATTAATGTACGA
CTTCAAGATTCCATTTATGTACATAAACACGGTGGGATTCTACACAGGCA
GTATCTCGACTGCAGGAAATCCCGTTAGCTACGCTATTACTCCCAACTTC
TATTCTCGATTTACGGACACAATGAATCTTTACGAACGTGCTATTAATAC
GGCCATGCAGATTGGACAAACACTGATGCACATGTATGTTATGCGTCGGA
CTCACCTTGTGATGCGAGAGCACTTGGGTACTCAAATCCCGCATCCTTAC
GAAATGTCGCGCAACGTGAGTTTCATTTTGCAAAATGGACACGCAGTTTT
GTCTTATCCTAGAGCCTTTAATCCGAATGTAGCAGAAGTGGCTTGCATTC
ATTGTAGGCCAGCTAGAAAACTTCCTAGAAACCTTGAGGAATTCATCGGT
GCTTCTGGAGCATCTGGATTTATTTACGTTTCTATGGGTTCCTCCGTAAA
GGCCGCGAACATGCCAGAGGCGTTGCGTCACATGCTTGTAAAGACCTTTG
CACGTCTTCCCTATCATGTGCTATGGAAGTATGAAGGCAGTTCGACAGAT
ATAAAAGACATCACATCAAACGTAAAACTTTCACGGTGGTTACCGCAGCA
GGACATTTTGGGACATCCCAAGCTTAGAGCGTTTGTAACACATGGAGGCT
TGCTAAGCATGTTTGAGACGGTATATCACGGAGTACCCGTTGTTACAATG
CCGGTATTCTGCGACCACGATGTTAACTCAGCCAAGGCCGAGGTCGATGG
ATATGCAATAAAGTTAGATCTTCAGACGCTGTCAGCCAATCAGTTGTACA
AGGCTATTATGAAAGTGATTCACAATCCTCGCTACAGAAATTCAGCACGA
CATCGGCAAAAGCTGTTCCTGGACCAGCGCTCAACAGCGCTAGATACTGC
CATATACTGGACCGAATATGTGCTGCGACATAATGGCGCTTATCATCTAC
AGACTCCATCCCGAAATATGACATGGTGGCAATACTACTTACTCGACGTA
GTTGCGGTTTATTTAATTTTACTTTACGTCCTGATCTTAGCACTGAGGCG
CATTGATTTTCCATACGAGAAGGTGCGGAGTCTTTATTCCCTTATGGCTC
CTTTTATTACAATAGCAAAAACGAAGTCAAAGAAGATTGCAAGCTTTCTA
GACCAT

BO13271.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-RE 1575 CG30438-PE 1..1572 17..1588 7860 100 Plus
CG30438-RD 1575 CG30438-PD 1..1572 17..1588 7860 100 Plus
CG30438-RC 1575 CG30438-PC 1..1572 17..1588 7860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-RE 2226 CG30438-RE 103..1676 15..1588 7870 100 Plus
CG30438-RD 2310 CG30438-RD 187..1760 15..1588 7870 100 Plus
CG30438-RC 2732 CG30438-RC 609..2182 15..1588 7870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5547987..5548775 634..1422 3945 100 Plus
2R 25286936 2R 5547628..5547924 338..634 1485 100 Plus
2R 25286936 2R 5539243..5539429 151..337 935 100 Plus
2R 25286936 2R 5548828..5548993 1423..1588 830 100 Plus
2R 25286936 2R 5267417..5267669 1277..1016 780 87.4 Minus
2R 25286936 2R 5267807..5268042 591..338 755 87.4 Minus
2R 25286936 2R 5527295..5527376 15..96 410 100 Plus
2R 25286936 2R 5528754..5528813 94..153 300 100 Plus
2R 25286936 2R 5267673..5267723 986..936 210 94.1 Minus
Blast to na_te.dros performed on 2014-11-27 10:56:28 has no hits.

BO13271.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:58 Download gff for BO13271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RD 161..1743 7..1592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:40 Download gff for BO13271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 611..2182 17..1590 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:12 Download gff for BO13271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RD 169..1740 17..1590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:40 Download gff for BO13271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30438-RC 611..2182 17..1590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:40 Download gff for BO13271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5547988..5548775 635..1422 100 -> Plus
2R 5548828..5548993 1423..1590 98   Plus
2R 5527297..5527375 17..95 100 -> Plus
2R 5528756..5528813 96..153 100 -> Plus
2R 5539246..5539429 154..337 100 -> Plus
2R 5547628..5547924 338..634 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:40 Download gff for BO13271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1414802..1414880 17..95 100 -> Plus
arm_2R 1416261..1416318 96..153 100 -> Plus
arm_2R 1426751..1426934 154..337 100 -> Plus
arm_2R 1435133..1435429 338..634 100 -> Plus
arm_2R 1435493..1436280 635..1422 100 -> Plus
arm_2R 1436333..1436498 1423..1590 98   Plus

BO13271.pep Sequence

Translation from 16 to 1606

> BO13271.pep
MLKKIALFLIIWSCGTLAADILMATQGGTKSHKIPFWELAKGLISRGHNI
TFLSGFPADFNIEGLLEVTPAGLVEYIHNYTNWDLLGSRMAGEMPIKPWD
GLRYAFESCDAMLRDSETKELTKKSFDLAILDGAFPECFLGLMYDFKIPF
MYINTVGFYTGSISTAGNPVSYAITPNFYSRFTDTMNLYERAINTAMQIG
QTLMHMYVMRRTHLVMREHLGTQIPHPYEMSRNVSFILQNGHAVLSYPRA
FNPNVAEVACIHCRPARKLPRNLEEFIGASGASGFIYVSMGSSVKAANMP
EALRHMLVKTFARLPYHVLWKYEGSSTDIKDITSNVKLSRWLPQQDILGH
PKLRAFVTHGGLLSMFETVYHGVPVVTMPVFCDHDVNSAKAEVDGYAIKL
DLQTLSANQLYKAIMKVIHNPRYRNSARHRQKLFLDQRSTALDTAIYWTE
YVLRHNGAYHLQTPSRNMTWWQYYLLDVVAVYLILLYVLILALRRIDFPY
EKVRSLYSLMAPFITIAKTKSKKIASFLDH

BO13271.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30438-PE 524 CG30438-PE 1..524 1..524 2763 100 Plus
CG30438-PD 524 CG30438-PD 1..524 1..524 2763 100 Plus
CG30438-PC 524 CG30438-PC 1..524 1..524 2763 100 Plus
CG30438-PB 524 CG30438-PB 1..524 1..524 2763 100 Plus
CG30438-PA 435 CG30438-PA 1..435 90..524 2292 100 Plus