Clone Sequence Records
BO13271.3prime Sequence
771 bp (727 high quality bases) assembled on 2006-05-08
> BO13271.3prime
ATGGTCTAGAAAGCTTGCAACCTTCTTTGACTTCGTTTTTGCTATTGTAA
TAAAAGGAGCCATAAGGGAATAAAGACTCCGCACCTTCTCGTATGGAAAA
TCAATGCGCCTCAGTGCTAAGATCAGGACGTAAAGTAAAATTAAATAAAC
CGCAACTACGTCGAGTAAGTAGTATTGCCACCATGTCATATTTCGGGATG
GAGTCTGTAGATGATAAGCGCCATTATGTCGCAGCACATATTCGGTCCAG
TATATGGCAGTATCTAGCGCTGTTGAGCGCTGGTCCAGGAACAGCTTTTG
CCGATGTCGTGCTGAATTTCTGTAGCGAGGATTGTGAATCACTTTCATAA
TAGCCTTGTACAACTGATTGGCTGACAGCGTCTGAAGATCTAACTTTATT
GCATATCCATCGACCTCGGCCTTGGCTGAGTTAACATCGTGGTCGCAGAA
TACCGGCATTGTAACAACGGGTACTCCGTGATATACCGTCTCAAACATGC
TTAGCAAGCCTCCATGTGTTACAAACGCTCTAAGCTTGGGATGTCCCAAA
ATGTCCTGCTGCGGTAACCACCGTGAAAGTTTTACGTTTGATGTGATGTC
TTTTATATCTGTCGAACTGCCTTCATACTTCCATAGCACATGATAGGGAA
GACGTGCAAAGGTCTTTACAAGCATGTGACGCAACGCCTCTGGCATGTTC
GCGGCCTTTACGGAGGAACCCATAAAAACGTAAATAAATCCAGATGCTCC
AGAAACACCGATGAATTCCTC
BO13271.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-PA | 1308 | CG30438-RA | 553..1302 | 771..22 | 3700 | 99.7 | Minus |
CG30438-PB | 1575 | CG30438-RB | 820..1569 | 771..22 | 3700 | 99.7 | Minus |
CG30438-PC | 1575 | CG30438-RC | 820..1569 | 771..22 | 3700 | 99.7 | Minus |
CG30438-PD | 1575 | CG30438-RD | 820..1569 | 771..22 | 3700 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-RE | 2226 | CG30438-RE | 924..1673 | 771..22 | 3720 | 99.7 | Minus |
CG30438-RD | 2310 | CG30438-RD | 1008..1757 | 771..22 | 3720 | 99.7 | Minus |
CG30438-RC | 2732 | CG30438-RC | 1430..2179 | 771..22 | 3720 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5548189..5548775 | 771..185 | 2905 | 99.7 | Minus |
2R | 25286936 | 2R | 5548828..5548990 | 184..22 | 815 | 100 | Minus |
2R | 25286936 | 2R | 5267417..5267669 | 330..591 | 780 | 87.4 | Plus |
2R | 25286936 | 2R | 5267673..5267723 | 621..671 | 210 | 94.1 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:13:19 has no hits.
BO13271.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:33 Download gff for
BO13271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-PD | 820..1575 | 15..771 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:57 Download gff for
BO13271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-PD | 820..1575 | 15..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:48 Download gff for
BO13271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 1430..2185 | 15..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:44:09 Download gff for
BO13271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 1430..2185 | 15..771 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:44:09 Download gff for
BO13271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5548189..5548775 | 185..771 | 99 | -> | Minus |
2R | 5548828..5548996 | 15..184 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:48 Download gff for
BO13271.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1436333..1436501 | 15..184 | 98 | | Minus |
arm_2R | 1435694..1436280 | 185..771 | 99 | -> | Minus |
BO13271.5prime Sequence
821 bp (757 high quality bases) assembled on 2006-05-08
> BO13271.5prime
GAAGTTATCCCCCTACATGCTTAAAAAAATTGCATTGTTTCTTATTATCT
GGAGTTGCGGCACATTGGCTGCGGACATCCTAATGGCTACGCAAGGCGGA
ACGAAGTCACACAAGATACCATTCTGGGAATTGGCTAAGGGATTAATATC
CAGAGGTCACAATATTACCTTTTTAAGTGGATTTCCTGCTGATTTTAATA
TTGAAGGACTGCTCGAGGTAACACCAGCTGGTCTTGTTGAATATATCCAC
AACTATACGAATTGGGATCTCTTGGGCTCACGCATGGCGGGAGAAATGCC
CATTAAGCCCTGGGACGGACTGCGATACGCTTTCGAATCATGTGACGCAA
TGCTTCGTGACTCAGAAACAAAGGAGCTGACCAAGAAAAGCTTTGATTTG
GCTATATTAGATGGAGCTTTCCCAGAGTGCTTCTTGGGATTAATGTACGA
CTTCAAGATTCCATTTATGTACATAAACACGGTGGGATTCTACACAGGCA
GTATCTCGACTGCAGGAAATCCCGTTAGCTACGCTATTACTCCCAACTTC
TATTCTCGATTTACGGACACACTGAATCTTTACGAACGTGCTATTAATAC
GGCCATGCAGATTGGACAAACACTGATGCACATGTATGTTATGCGTCGGA
CTCACCTTGTGATGCGAGAGCACTTGGGTACTCAAATCCCGCATCCTTAC
GAAATGTCGCGCAACGTGAGTTTCATTTTGCAAAATGGACACGCAGTTTT
GTCTTATCCTAGAGCCTTTAATCCGAATGTAACAGAAGTGGCTTTGCTTC
ATTGTAGGCCAGCTAGAAAAC
BO13271.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-PB | 1575 | CG30438-RB | 1..778 | 17..794 | 3840 | 99.7 | Plus |
CG30438-PC | 1575 | CG30438-RC | 1..778 | 17..794 | 3840 | 99.7 | Plus |
CG30438-PD | 1575 | CG30438-RD | 1..778 | 17..794 | 3840 | 99.7 | Plus |
CG30438-PA | 1308 | CG30438-RA | 1..511 | 284..794 | 2505 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-RE | 2226 | CG30438-RE | 103..909 | 15..821 | 3960 | 99.5 | Plus |
CG30438-RD | 2310 | CG30438-RD | 187..993 | 15..821 | 3960 | 99.5 | Plus |
CG30438-RC | 2732 | CG30438-RC | 609..1415 | 15..821 | 3960 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5547628..5547924 | 338..634 | 1470 | 99.7 | Plus |
2R | 25286936 | 2R | 5539243..5539429 | 151..337 | 935 | 100 | Plus |
2R | 25286936 | 2R | 5547987..5548174 | 634..821 | 880 | 97.9 | Plus |
2R | 25286936 | 2R | 5267807..5268042 | 591..338 | 740 | 87 | Minus |
2R | 25286936 | 2R | 5527295..5527376 | 15..96 | 410 | 100 | Plus |
2R | 25286936 | 2R | 5528754..5528813 | 94..153 | 300 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 02:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 5125..5221 | 136..229 | 108 | 59.8 | Plus |
BO13271.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:34 Download gff for
BO13271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-PD | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:58 Download gff for
BO13271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-PD | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:36 Download gff for
BO13271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 602..1415 | 7..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:25:57 Download gff for
BO13271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 602..1415 | 7..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:25:57 Download gff for
BO13271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5527295..5527375 | 15..95 | 100 | -> | Plus |
2R | 5528756..5528813 | 96..153 | 100 | -> | Plus |
2R | 5539246..5539429 | 154..337 | 100 | -> | Plus |
2R | 5547628..5547924 | 338..634 | 99 | -> | Plus |
2R | 5547988..5548174 | 635..821 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:36 Download gff for
BO13271.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1414800..1414880 | 15..95 | 100 | -> | Plus |
arm_2R | 1416261..1416318 | 96..153 | 100 | -> | Plus |
arm_2R | 1426751..1426934 | 154..337 | 100 | -> | Plus |
arm_2R | 1435133..1435429 | 338..634 | 99 | -> | Plus |
arm_2R | 1435493..1435679 | 635..821 | 98 | | Plus |
BO13271.complete Sequence
1606 bp assembled on 2008-08-14
GenBank Submission: FJ632745
> BO13271.complete
GAAGTTATCAGTCGACATGCTTAAAAAAATTGCATTGTTTCTTATTATCT
GGAGTTGCGGCACATTGGCTGCGGACATCCTAATGGCTACGCAAGGCGGA
ACGAAGTCACACAAGATACCATTCTGGGAATTGGCTAAGGGATTAATATC
CAGAGGTCACAATATTACCTTTTTAAGTGGATTTCCTGCTGATTTTAATA
TTGAAGGACTGCTCGAGGTAACACCAGCTGGTCTTGTTGAATATATCCAC
AACTATACGAATTGGGATCTCTTGGGCTCACGCATGGCGGGAGAAATGCC
CATTAAGCCCTGGGACGGACTGCGATACGCTTTCGAATCATGTGACGCAA
TGCTTCGTGACTCAGAAACAAAGGAGCTGACCAAGAAAAGCTTTGATTTG
GCTATATTAGATGGAGCTTTCCCAGAGTGCTTCTTGGGATTAATGTACGA
CTTCAAGATTCCATTTATGTACATAAACACGGTGGGATTCTACACAGGCA
GTATCTCGACTGCAGGAAATCCCGTTAGCTACGCTATTACTCCCAACTTC
TATTCTCGATTTACGGACACAATGAATCTTTACGAACGTGCTATTAATAC
GGCCATGCAGATTGGACAAACACTGATGCACATGTATGTTATGCGTCGGA
CTCACCTTGTGATGCGAGAGCACTTGGGTACTCAAATCCCGCATCCTTAC
GAAATGTCGCGCAACGTGAGTTTCATTTTGCAAAATGGACACGCAGTTTT
GTCTTATCCTAGAGCCTTTAATCCGAATGTAGCAGAAGTGGCTTGCATTC
ATTGTAGGCCAGCTAGAAAACTTCCTAGAAACCTTGAGGAATTCATCGGT
GCTTCTGGAGCATCTGGATTTATTTACGTTTCTATGGGTTCCTCCGTAAA
GGCCGCGAACATGCCAGAGGCGTTGCGTCACATGCTTGTAAAGACCTTTG
CACGTCTTCCCTATCATGTGCTATGGAAGTATGAAGGCAGTTCGACAGAT
ATAAAAGACATCACATCAAACGTAAAACTTTCACGGTGGTTACCGCAGCA
GGACATTTTGGGACATCCCAAGCTTAGAGCGTTTGTAACACATGGAGGCT
TGCTAAGCATGTTTGAGACGGTATATCACGGAGTACCCGTTGTTACAATG
CCGGTATTCTGCGACCACGATGTTAACTCAGCCAAGGCCGAGGTCGATGG
ATATGCAATAAAGTTAGATCTTCAGACGCTGTCAGCCAATCAGTTGTACA
AGGCTATTATGAAAGTGATTCACAATCCTCGCTACAGAAATTCAGCACGA
CATCGGCAAAAGCTGTTCCTGGACCAGCGCTCAACAGCGCTAGATACTGC
CATATACTGGACCGAATATGTGCTGCGACATAATGGCGCTTATCATCTAC
AGACTCCATCCCGAAATATGACATGGTGGCAATACTACTTACTCGACGTA
GTTGCGGTTTATTTAATTTTACTTTACGTCCTGATCTTAGCACTGAGGCG
CATTGATTTTCCATACGAGAAGGTGCGGAGTCTTTATTCCCTTATGGCTC
CTTTTATTACAATAGCAAAAACGAAGTCAAAGAAGATTGCAAGCTTTCTA
GACCAT
BO13271.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-RE | 1575 | CG30438-PE | 1..1572 | 17..1588 | 7860 | 100 | Plus |
CG30438-RD | 1575 | CG30438-PD | 1..1572 | 17..1588 | 7860 | 100 | Plus |
CG30438-RC | 1575 | CG30438-PC | 1..1572 | 17..1588 | 7860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-RE | 2226 | CG30438-RE | 103..1676 | 15..1588 | 7870 | 100 | Plus |
CG30438-RD | 2310 | CG30438-RD | 187..1760 | 15..1588 | 7870 | 100 | Plus |
CG30438-RC | 2732 | CG30438-RC | 609..2182 | 15..1588 | 7870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5547987..5548775 | 634..1422 | 3945 | 100 | Plus |
2R | 25286936 | 2R | 5547628..5547924 | 338..634 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 5539243..5539429 | 151..337 | 935 | 100 | Plus |
2R | 25286936 | 2R | 5548828..5548993 | 1423..1588 | 830 | 100 | Plus |
2R | 25286936 | 2R | 5267417..5267669 | 1277..1016 | 780 | 87.4 | Minus |
2R | 25286936 | 2R | 5267807..5268042 | 591..338 | 755 | 87.4 | Minus |
2R | 25286936 | 2R | 5527295..5527376 | 15..96 | 410 | 100 | Plus |
2R | 25286936 | 2R | 5528754..5528813 | 94..153 | 300 | 100 | Plus |
2R | 25286936 | 2R | 5267673..5267723 | 986..936 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:56:28 has no hits.
BO13271.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:58 Download gff for
BO13271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RD | 161..1743 | 7..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:40 Download gff for
BO13271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 611..2182 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:12 Download gff for
BO13271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RD | 169..1740 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:40 Download gff for
BO13271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30438-RC | 611..2182 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:40 Download gff for
BO13271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5547988..5548775 | 635..1422 | 100 | -> | Plus |
2R | 5548828..5548993 | 1423..1590 | 98 | | Plus |
2R | 5527297..5527375 | 17..95 | 100 | -> | Plus |
2R | 5528756..5528813 | 96..153 | 100 | -> | Plus |
2R | 5539246..5539429 | 154..337 | 100 | -> | Plus |
2R | 5547628..5547924 | 338..634 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:40 Download gff for
BO13271.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1414802..1414880 | 17..95 | 100 | -> | Plus |
arm_2R | 1416261..1416318 | 96..153 | 100 | -> | Plus |
arm_2R | 1426751..1426934 | 154..337 | 100 | -> | Plus |
arm_2R | 1435133..1435429 | 338..634 | 100 | -> | Plus |
arm_2R | 1435493..1436280 | 635..1422 | 100 | -> | Plus |
arm_2R | 1436333..1436498 | 1423..1590 | 98 | | Plus |
BO13271.pep Sequence
Translation from 16 to 1606
> BO13271.pep
MLKKIALFLIIWSCGTLAADILMATQGGTKSHKIPFWELAKGLISRGHNI
TFLSGFPADFNIEGLLEVTPAGLVEYIHNYTNWDLLGSRMAGEMPIKPWD
GLRYAFESCDAMLRDSETKELTKKSFDLAILDGAFPECFLGLMYDFKIPF
MYINTVGFYTGSISTAGNPVSYAITPNFYSRFTDTMNLYERAINTAMQIG
QTLMHMYVMRRTHLVMREHLGTQIPHPYEMSRNVSFILQNGHAVLSYPRA
FNPNVAEVACIHCRPARKLPRNLEEFIGASGASGFIYVSMGSSVKAANMP
EALRHMLVKTFARLPYHVLWKYEGSSTDIKDITSNVKLSRWLPQQDILGH
PKLRAFVTHGGLLSMFETVYHGVPVVTMPVFCDHDVNSAKAEVDGYAIKL
DLQTLSANQLYKAIMKVIHNPRYRNSARHRQKLFLDQRSTALDTAIYWTE
YVLRHNGAYHLQTPSRNMTWWQYYLLDVVAVYLILLYVLILALRRIDFPY
EKVRSLYSLMAPFITIAKTKSKKIASFLDH
BO13271.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30438-PE | 524 | CG30438-PE | 1..524 | 1..524 | 2763 | 100 | Plus |
CG30438-PD | 524 | CG30438-PD | 1..524 | 1..524 | 2763 | 100 | Plus |
CG30438-PC | 524 | CG30438-PC | 1..524 | 1..524 | 2763 | 100 | Plus |
CG30438-PB | 524 | CG30438-PB | 1..524 | 1..524 | 2763 | 100 | Plus |
CG30438-PA | 435 | CG30438-PA | 1..435 | 90..524 | 2292 | 100 | Plus |