Clone Sequence Records
BO13272.3prime Sequence
773 bp (733 high quality bases) assembled on 2006-05-08
> BO13272.3prime
ATGGTCTAGAAAGCTTGCCTTCGGAAGGTACTTCAACAGTCGAACCTCGT
GCGACAGCCACAATGCGAAACTCAGCAGAATAAGCGAGCCCGACTGGTGG
GCCGTTGCCAGAGGCACGGGCACGTAGTTAAGCAAGGTGGTTACGCCAAG
CGTGGCCTGCGTCCAGGCCATAGCCACCACGGCGTTGATGGCCCAGTTGG
CGCGCTTGGGCAACTGCATCCTTCTGGTGACCAGCCACAGAGCGGTGGTC
AGCGTTACTGTGCTAATACCAAGGATGCGGTGATTGAACTGCACCGTCGT
CGGATTCTCGGTGATGTTCTTCTGTATGGGCGCAAACGTCCACATGTCAT
CGGGAATCCACTTGTCGCCCATCTTCGGGAACGAGTTGTACACGAGTCCG
GCGTCTAGTCCGGCTACAAAGGCTCCAGAAATGGCAGTCAGCAGGACCAT
TGCCTTCGTCAAATGCGTCAGCCCCTTGATATTAAATGCTTTCTTGGCTT
GGATCACGAATGTGTTCGTGGGGATGAGCAGGGACATGGCCTTTGACAGG
GAGAGTGAGTACAGGACGAAGGCAGCTGCCAGGTGGGAGGCCAATCTATA
CTGGGATACCCGTGGCACGTCGTTGGGATCCTGGAACCTGTCTTCCAGCC
CGGACTTGACCATGTACCATCCCATCAGACCTTGCAGGCCAATCAGTGTG
CCCAGCAGCAGGACGCTCTTCTTGGTCTTCGCACAGAAGTATCCCTTTCT
CCAGAAGTAAACAGCGGGCAAAA
BO13272.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3803-PA | 1182 | CG3803-RA | 425..1179 | 773..19 | 3775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3803-RA | 1340 | CG3803-RA | 558..1312 | 773..19 | 3775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23952541..23953295 | 19..773 | 3775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:06:31 has no hits.
BO13272.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:35 Download gff for
BO13272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-PA | 429..1182 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:59 Download gff for
BO13272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-PA | 429..1182 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:42 Download gff for
BO13272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 553..1306 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:04 Download gff for
BO13272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 562..1315 | 15..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:04 Download gff for
BO13272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23952537..23953291 | 15..769 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:42 Download gff for
BO13272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19840060..19840814 | 15..769 | 99 | | Plus |
BO13272.5prime Sequence
835 bp (752 high quality bases) assembled on 2006-05-08
> BO13272.5prime
GAAGTTATCAGTCGACATGCTGCGATTGCTCCAGAAGAGAACCAATCTCA
TAAAGCTAGTAGTACCCGGCCCCCGACTTCACCAGACGATTGCGCAAACA
GCGATAAAGGAAATCCCAGTGATAAAGCCCATCAGCACTCCGAAAAGCGA
CAAGACCGTCGGAAGATGGTTCCTGGGAGTCAGCGGCATGGTCTTCGTGG
CCGTTGGTCTAGGCGGAGTAACCCGACTGACAGAGTCCGGACTGTCCATG
GTCACTTGGAAGCTGACGGGTGAACGTATGCCCCGAACCCAGGAGGAATG
GGTGCAGGAGTTCAATCTCTACCAGCAATACCCAGAGTACAAGCTAAAGA
ATGTGAATATGACCGTGGAGGAGTTCAAGTTCATTTTCATGATGGAGTAC
ATGCACAGGATGTGGGGTCGTGCCATCGGCGGGTTCTTCCTTTTGCCCGC
TGTTTACTTCTGGAGAAAGGGATACTTCTGTGCGAAGACCAAGAAGAGCG
TCCTGCTGCTGGGCACACTGATTGGCCTGCAAGGTCTGATGGGATGGTAC
ATGGTCAAGTCCGGGCTGGAAGACAGGTTCCAGGATCCCAACGACGTGCC
ACGGGTATCCCAGTATAGATTGGCCTCCCACCTGGCAGCTGCCTTCGTCC
TGTACTCACTCTCCCTGTCAAAGGCCATGTCCCTGCTCATCCCCACGAAC
ACATTCGTGATCCAAGCCAAGAAAGCATTTAATATCAAGGGGCTGACGCA
TTTGACGAAGGCAATGGTCCTGCTGACTGCCATTTCTGGAGCCTTTGTAG
CCGGACTAGACGCCGGAATCGTGTACAACTCGTTC
BO13272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3803-PA | 1182 | CG3803-RA | 1..819 | 17..835 | 4070 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3803-RA | 1340 | CG3803-RA | 134..952 | 17..835 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23952901..23953390 | 835..346 | 2435 | 99.8 | Minus |
2R | 25286936 | 2R | 23953449..23953583 | 345..211 | 675 | 100 | Minus |
2R | 25286936 | 2R | 23953638..23953743 | 213..108 | 530 | 100 | Minus |
2R | 25286936 | 2R | 23953822..23953915 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 23:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 1493..1528 | 207..172 | 108 | 77.8 | Minus |
BO13272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:36 Download gff for
BO13272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:00 Download gff for
BO13272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-PA | 1..819 | 17..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:59 Download gff for
BO13272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 121..943 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:45 Download gff for
BO13272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 130..952 | 9..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:45 Download gff for
BO13272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23952901..23953390 | 346..835 | 99 | <- | Minus |
2R | 23953449..23953581 | 213..345 | 100 | <- | Minus |
2R | 23953639..23953741 | 110..212 | 100 | <- | Minus |
2R | 23953823..23953919 | 9..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:59 Download gff for
BO13272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19840424..19840913 | 346..835 | 99 | <- | Minus |
arm_2R | 19840972..19841104 | 213..345 | 100 | <- | Minus |
arm_2R | 19841162..19841264 | 110..212 | 100 | <- | Minus |
arm_2R | 19841346..19841442 | 9..109 | 96 | | Minus |
BO13272.complete Sequence
1213 bp assembled on 2006-10-11
GenBank Submission: FJ632746
> BO13272.complete
GAAGTTATCAGTCGACATGCTGCGATTGCTCCAGAAGAGAACCAATCTCA
TAAAGCTAGTAGTACCCGGCCCCCGACTTCACCAGACGATTGCGCAAACA
GCGATAAAGGAAATCCCAGTGATAAAGCCCATCAGCACTCCGAAAAGCGA
CAAGACCGTCGGAAGATGGTTCCTGGGAGTCAGCGGCATGGTCTTCGTGG
CCGTTGGTCTAGGCGGAGTAACCCGACTGACAGAGTCCGGACTGTCCATG
GTCACTTGGAAGCTGACGGGTGAACGTATGCCCCGAACCCAGGAGGAATG
GGTGCAGGAGTTCAATCTCTACCAGCAATACCCAGAGTACAAGCTAAAGA
ATGTGAATATGACCGTGGAGGAGTTCAAGTTCATTTTCATGATGGAGTAC
ATGCACAGGATGTGGGGTCGTGCCATCGGCGGGTTCTTCCTTTTGCCCGC
TGTTTACTTCTGGAGAAAGGGATACTTCTGTGCGAAGACCAAGAAGAGCG
TCCTGCTGCTGGGCACACTGATTGGCCTGCAAGGTCTGATGGGATGGTAC
ATGGTCAAGTCCGGGCTGGAAGACAGGTTCCAGGATCCCAACGACGTGCC
ACGGGTATCCCAGTATAGATTGGCCTCCCACCTGGCAGCTGCCTTCGTCC
TGTACTCACTCTCCCTGTCAAAGGCCATGTCCCTGCTCATCCCCACGAAC
ACATTCGTGATCCAAGCCAAGAAAGCATTTAATATCAAGGGGCTGACGCA
TTTGACGAAGGCAATGGTCCTGCTGACTGCCATTTCTGGAGCCTTTGTAG
CCGGACTAGACGCCGGACTCGTGTACAACTCGTTCCCGAAGATGGGCGAC
AAGTGGATTCCCGATGACATGTGGACGTTTGCGCCCATACAGAAGAACAT
CACCGAGAATCCGACGACGGTGCAGTTCAATCACCGCATCCTTGGTATTA
GCACAGTAACGCTGACCACCGCTCTGTGGCTGGTCACCAGAAGGATGCAG
TTGCCCAAGCGCGCCAACTGGGCCATCAACGCCGTGGTGGCTATGGCCTG
GACGCAGGCCACGCTTGGCGTAACCACCTTGCTTAACTACGTGCCCGTGC
CTCTGGCAACGGCCCACCAGTCGGGCTCGCTTATTCTGCTGAGTTTCGCA
TTGTGGCTGTCGCACGAGGTTCGACTGTTGAAGTACCTTCCGAAGGCAAG
CTTTCTAGACCAT
BO13272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3803-RA | 1182 | CG3803-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3803-RA | 1340 | CG3803-RA | 134..1312 | 17..1195 | 5895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23952541..23953390 | 1195..346 | 4250 | 100 | Minus |
2R | 25286936 | 2R | 23953449..23953583 | 345..211 | 675 | 100 | Minus |
2R | 25286936 | 2R | 23953638..23953743 | 213..108 | 530 | 100 | Minus |
2R | 25286936 | 2R | 23953822..23953915 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:36 has no hits.
BO13272.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:06 Download gff for
BO13272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 1..1182 | 17..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:46 Download gff for
BO13272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 97..1282 | 9..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:57 Download gff for
BO13272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 125..1303 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:06 Download gff for
BO13272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 97..1282 | 9..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:48 Download gff for
BO13272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3803-RA | 134..1312 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:48 Download gff for
BO13272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23952539..23953390 | 346..1197 | 99 | <- | Minus |
2R | 23953449..23953581 | 213..345 | 100 | <- | Minus |
2R | 23953639..23953741 | 110..212 | 100 | <- | Minus |
2R | 23953823..23953915 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:57 Download gff for
BO13272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19840062..19840913 | 346..1197 | 99 | <- | Minus |
arm_2R | 19840972..19841104 | 213..345 | 100 | <- | Minus |
arm_2R | 19841162..19841264 | 110..212 | 100 | <- | Minus |
arm_2R | 19841346..19841438 | 17..109 | 100 | | Minus |
BO13272.pep Sequence
Translation from 16 to 1213
> BO13272.pep
MLRLLQKRTNLIKLVVPGPRLHQTIAQTAIKEIPVIKPISTPKSDKTVGR
WFLGVSGMVFVAVGLGGVTRLTESGLSMVTWKLTGERMPRTQEEWVQEFN
LYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAIGGFFLLPAVYFWR
KGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRVSQY
RLASHLAAAFVLYSLSLSKAMSLLIPTNTFVIQAKKAFNIKGLTHLTKAM
VLLTAISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPT
TVQFNHRILGISTVTLTTALWLVTRRMQLPKRANWAINAVVAMAWTQATL
GVTTLLNYVPVPLATAHQSGSLILLSFALWLSHEVRLLKYLPKASFLDH
BO13272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3803-PA | 393 | CG3803-PA | 1..393 | 1..393 | 2038 | 100 | Plus |