Clone BO13272 Report

Search the DGRC for BO13272

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG3803-RA
Protein status:BO13272.pep: validated full length
Sequenced Size:1213

Clone Sequence Records

BO13272.3prime Sequence

773 bp (733 high quality bases) assembled on 2006-05-08

> BO13272.3prime
ATGGTCTAGAAAGCTTGCCTTCGGAAGGTACTTCAACAGTCGAACCTCGT
GCGACAGCCACAATGCGAAACTCAGCAGAATAAGCGAGCCCGACTGGTGG
GCCGTTGCCAGAGGCACGGGCACGTAGTTAAGCAAGGTGGTTACGCCAAG
CGTGGCCTGCGTCCAGGCCATAGCCACCACGGCGTTGATGGCCCAGTTGG
CGCGCTTGGGCAACTGCATCCTTCTGGTGACCAGCCACAGAGCGGTGGTC
AGCGTTACTGTGCTAATACCAAGGATGCGGTGATTGAACTGCACCGTCGT
CGGATTCTCGGTGATGTTCTTCTGTATGGGCGCAAACGTCCACATGTCAT
CGGGAATCCACTTGTCGCCCATCTTCGGGAACGAGTTGTACACGAGTCCG
GCGTCTAGTCCGGCTACAAAGGCTCCAGAAATGGCAGTCAGCAGGACCAT
TGCCTTCGTCAAATGCGTCAGCCCCTTGATATTAAATGCTTTCTTGGCTT
GGATCACGAATGTGTTCGTGGGGATGAGCAGGGACATGGCCTTTGACAGG
GAGAGTGAGTACAGGACGAAGGCAGCTGCCAGGTGGGAGGCCAATCTATA
CTGGGATACCCGTGGCACGTCGTTGGGATCCTGGAACCTGTCTTCCAGCC
CGGACTTGACCATGTACCATCCCATCAGACCTTGCAGGCCAATCAGTGTG
CCCAGCAGCAGGACGCTCTTCTTGGTCTTCGCACAGAAGTATCCCTTTCT
CCAGAAGTAAACAGCGGGCAAAA

BO13272.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-PA 1182 CG3803-RA 425..1179 773..19 3775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-RA 1340 CG3803-RA 558..1312 773..19 3775 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23952541..23953295 19..773 3775 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:06:31 has no hits.

BO13272.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:35 Download gff for BO13272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3803-PA 429..1182 15..769 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:43:59 Download gff for BO13272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3803-PA 429..1182 15..769 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:42 Download gff for BO13272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 553..1306 15..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:04 Download gff for BO13272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 562..1315 15..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:04 Download gff for BO13272.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23952537..23953291 15..769 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:42 Download gff for BO13272.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19840060..19840814 15..769 99   Plus

BO13272.5prime Sequence

835 bp (752 high quality bases) assembled on 2006-05-08

> BO13272.5prime
GAAGTTATCAGTCGACATGCTGCGATTGCTCCAGAAGAGAACCAATCTCA
TAAAGCTAGTAGTACCCGGCCCCCGACTTCACCAGACGATTGCGCAAACA
GCGATAAAGGAAATCCCAGTGATAAAGCCCATCAGCACTCCGAAAAGCGA
CAAGACCGTCGGAAGATGGTTCCTGGGAGTCAGCGGCATGGTCTTCGTGG
CCGTTGGTCTAGGCGGAGTAACCCGACTGACAGAGTCCGGACTGTCCATG
GTCACTTGGAAGCTGACGGGTGAACGTATGCCCCGAACCCAGGAGGAATG
GGTGCAGGAGTTCAATCTCTACCAGCAATACCCAGAGTACAAGCTAAAGA
ATGTGAATATGACCGTGGAGGAGTTCAAGTTCATTTTCATGATGGAGTAC
ATGCACAGGATGTGGGGTCGTGCCATCGGCGGGTTCTTCCTTTTGCCCGC
TGTTTACTTCTGGAGAAAGGGATACTTCTGTGCGAAGACCAAGAAGAGCG
TCCTGCTGCTGGGCACACTGATTGGCCTGCAAGGTCTGATGGGATGGTAC
ATGGTCAAGTCCGGGCTGGAAGACAGGTTCCAGGATCCCAACGACGTGCC
ACGGGTATCCCAGTATAGATTGGCCTCCCACCTGGCAGCTGCCTTCGTCC
TGTACTCACTCTCCCTGTCAAAGGCCATGTCCCTGCTCATCCCCACGAAC
ACATTCGTGATCCAAGCCAAGAAAGCATTTAATATCAAGGGGCTGACGCA
TTTGACGAAGGCAATGGTCCTGCTGACTGCCATTTCTGGAGCCTTTGTAG
CCGGACTAGACGCCGGAATCGTGTACAACTCGTTC

BO13272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-PA 1182 CG3803-RA 1..819 17..835 4070 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-RA 1340 CG3803-RA 134..952 17..835 4080 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23952901..23953390 835..346 2435 99.8 Minus
2R 25286936 2R 23953449..23953583 345..211 675 100 Minus
2R 25286936 2R 23953638..23953743 213..108 530 100 Minus
2R 25286936 2R 23953822..23953915 110..17 470 100 Minus
Blast to na_te.dros performed 2015-02-09 23:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 1493..1528 207..172 108 77.8 Minus

BO13272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:36 Download gff for BO13272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3803-PA 1..819 17..835 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:00 Download gff for BO13272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3803-PA 1..819 17..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:59 Download gff for BO13272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 121..943 9..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:45 Download gff for BO13272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 130..952 9..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:45 Download gff for BO13272.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23952901..23953390 346..835 99 <- Minus
2R 23953449..23953581 213..345 100 <- Minus
2R 23953639..23953741 110..212 100 <- Minus
2R 23953823..23953919 9..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:59 Download gff for BO13272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19840424..19840913 346..835 99 <- Minus
arm_2R 19840972..19841104 213..345 100 <- Minus
arm_2R 19841162..19841264 110..212 100 <- Minus
arm_2R 19841346..19841442 9..109 96   Minus

BO13272.complete Sequence

1213 bp assembled on 2006-10-11

GenBank Submission: FJ632746

> BO13272.complete
GAAGTTATCAGTCGACATGCTGCGATTGCTCCAGAAGAGAACCAATCTCA
TAAAGCTAGTAGTACCCGGCCCCCGACTTCACCAGACGATTGCGCAAACA
GCGATAAAGGAAATCCCAGTGATAAAGCCCATCAGCACTCCGAAAAGCGA
CAAGACCGTCGGAAGATGGTTCCTGGGAGTCAGCGGCATGGTCTTCGTGG
CCGTTGGTCTAGGCGGAGTAACCCGACTGACAGAGTCCGGACTGTCCATG
GTCACTTGGAAGCTGACGGGTGAACGTATGCCCCGAACCCAGGAGGAATG
GGTGCAGGAGTTCAATCTCTACCAGCAATACCCAGAGTACAAGCTAAAGA
ATGTGAATATGACCGTGGAGGAGTTCAAGTTCATTTTCATGATGGAGTAC
ATGCACAGGATGTGGGGTCGTGCCATCGGCGGGTTCTTCCTTTTGCCCGC
TGTTTACTTCTGGAGAAAGGGATACTTCTGTGCGAAGACCAAGAAGAGCG
TCCTGCTGCTGGGCACACTGATTGGCCTGCAAGGTCTGATGGGATGGTAC
ATGGTCAAGTCCGGGCTGGAAGACAGGTTCCAGGATCCCAACGACGTGCC
ACGGGTATCCCAGTATAGATTGGCCTCCCACCTGGCAGCTGCCTTCGTCC
TGTACTCACTCTCCCTGTCAAAGGCCATGTCCCTGCTCATCCCCACGAAC
ACATTCGTGATCCAAGCCAAGAAAGCATTTAATATCAAGGGGCTGACGCA
TTTGACGAAGGCAATGGTCCTGCTGACTGCCATTTCTGGAGCCTTTGTAG
CCGGACTAGACGCCGGACTCGTGTACAACTCGTTCCCGAAGATGGGCGAC
AAGTGGATTCCCGATGACATGTGGACGTTTGCGCCCATACAGAAGAACAT
CACCGAGAATCCGACGACGGTGCAGTTCAATCACCGCATCCTTGGTATTA
GCACAGTAACGCTGACCACCGCTCTGTGGCTGGTCACCAGAAGGATGCAG
TTGCCCAAGCGCGCCAACTGGGCCATCAACGCCGTGGTGGCTATGGCCTG
GACGCAGGCCACGCTTGGCGTAACCACCTTGCTTAACTACGTGCCCGTGC
CTCTGGCAACGGCCCACCAGTCGGGCTCGCTTATTCTGCTGAGTTTCGCA
TTGTGGCTGTCGCACGAGGTTCGACTGTTGAAGTACCTTCCGAAGGCAAG
CTTTCTAGACCAT

BO13272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-RA 1182 CG3803-PA 1..1179 17..1195 5895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-RA 1340 CG3803-RA 134..1312 17..1195 5895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23952541..23953390 1195..346 4250 100 Minus
2R 25286936 2R 23953449..23953583 345..211 675 100 Minus
2R 25286936 2R 23953638..23953743 213..108 530 100 Minus
2R 25286936 2R 23953822..23953915 110..17 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:49:36 has no hits.

BO13272.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:06 Download gff for BO13272.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 1..1182 17..1199 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:46 Download gff for BO13272.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 97..1282 9..1199 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:57 Download gff for BO13272.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 125..1303 17..1197 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:06 Download gff for BO13272.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 97..1282 9..1199 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:48 Download gff for BO13272.complete
Subject Subject Range Query Range Percent Splice Strand
CG3803-RA 134..1312 17..1197 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:48 Download gff for BO13272.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23952539..23953390 346..1197 99 <- Minus
2R 23953449..23953581 213..345 100 <- Minus
2R 23953639..23953741 110..212 100 <- Minus
2R 23953823..23953915 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:57 Download gff for BO13272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19840062..19840913 346..1197 99 <- Minus
arm_2R 19840972..19841104 213..345 100 <- Minus
arm_2R 19841162..19841264 110..212 100 <- Minus
arm_2R 19841346..19841438 17..109 100   Minus

BO13272.pep Sequence

Translation from 16 to 1213

> BO13272.pep
MLRLLQKRTNLIKLVVPGPRLHQTIAQTAIKEIPVIKPISTPKSDKTVGR
WFLGVSGMVFVAVGLGGVTRLTESGLSMVTWKLTGERMPRTQEEWVQEFN
LYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAIGGFFLLPAVYFWR
KGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRVSQY
RLASHLAAAFVLYSLSLSKAMSLLIPTNTFVIQAKKAFNIKGLTHLTKAM
VLLTAISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPT
TVQFNHRILGISTVTLTTALWLVTRRMQLPKRANWAINAVVAMAWTQATL
GVTTLLNYVPVPLATAHQSGSLILLSFALWLSHEVRLLKYLPKASFLDH

BO13272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3803-PA 393 CG3803-PA 1..393 1..393 2038 100 Plus