Clone Sequence Records
BO13275.5prime Sequence
855 bp (724 high quality bases) assembled on 2006-05-08
> BO13275.5prime
GAAGTTATCAGTCGACATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAG
ACACCAGTACGGGCAGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAA
CGTCAACAAACCAAATCGGAGGCCAAGAAGCAGAACTATGTGGATCACAT
CGTCAGTGTGCAGCAAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGAC
TTGAAGAGGAGCTCCGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCG
CTGCCGCAGCTGCCGGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCT
GGCTAGCACCCACTCGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCA
GATCGAACAGTAATCTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAG
GGCACCAAGTCGACGTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAG
CAGCTGTTGCTATTCGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGC
AGGACTGCCTGAGCAACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGT
ACAAGCGATCTGCCCGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGAT
AGCCAACTACGAAGATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACT
ACGACCAGAGTCTAGAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGC
AACTACCTGACCATGACGGGCACCATTAAGCGGGGTCGCAAGAAGGGCCA
GTCCGTGGACCTACAGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGA
ACGCCCATGCGATGGCCAGCGACACACAGAAGGGTGGCAATTTGTGCTGC
CACTG
BO13275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4596-PA | 1278 | CG4596-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4596-RA | 2357 | CG4596-RA | 155..988 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10873522..10874213 | 159..850 | 3460 | 100 | Plus |
3R | 32079331 | 3R | 10873192..10873338 | 17..163 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:06:02 has no hits.
BO13275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:37 Download gff for
BO13275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4596-PA | 1..839 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:02 Download gff for
BO13275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4596-PA | 1..839 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:37 Download gff for
BO13275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4596-RA | 155..993 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:54 Download gff for
BO13275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4596-RA | 155..993 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:54 Download gff for
BO13275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10873192..10873338 | 17..163 | 100 | -> | Plus |
3R | 10873527..10874218 | 164..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:37 Download gff for
BO13275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6698914..6699060 | 17..163 | 100 | -> | Plus |
arm_3R | 6699249..6699940 | 164..855 | 99 | | Plus |
BO13275.complete Sequence
1309 bp assembled on 2008-08-14
GenBank Submission: FJ632747
> BO13275.complete
GAAGTTATCAGTCGACATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAG
ACACCAGTACGGGCAGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAA
CGTCAACAAACCAAATCGGAGGCCAAGAAGCAGAACTATGTGGATCACAT
CGTCAGTGTGCAGCAAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGAC
TTGAAGAGGAGCTCCGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCG
CTGCCGCAGCTGCCGGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCT
GGCTAGCACCCACTCGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCA
GATCGAACAGTAATCTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAG
GGCACCAAGTCGACGTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAG
CAGCTGTTGCTATTCGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGC
AGGACTGCCTGAGCAACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGT
ACAAGCGATCTGCCCGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGAT
AGCCAACTACGAAGATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACT
ACGACCAGAGTCTAGAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGC
AACTACCTGACCATGACGGGCACCATTAAGCGGGGTCGCAAGAAGGGCCA
GTCCGTGGACCTACAGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGA
ACGCCCATGCGATGGCCAGCGACACACAGAAGGGTGGCAATTTGTGCTGC
ACCTGCAGCTGTGGCACCGGCCTCCACATCCTGCTCATCTCGCTCTTTTG
CCTGCCGTTTGTGACCGTCGTTTCGGCGGTATACTCCTTCTACATTGGAA
CGCTCACCTGGTACAATATGTTCAACTATTACTGCGAGGAGAGGACGTAC
CTGCACAAGATCCTGGTGACGCCGCTGCTGTTCGTGATCTATCCGCTGGC
CATCGTGCTGTGCACCTTCGGACTGGGCATCTACTCGGGATTGCGGCAGC
TGAGTCTGCAGTACAGCAGTTGGGTGAACGACATCACGGATATCGAGAAG
GGATTCTACGGCTGGTTGTGCGGATTCCTTCGCATGCCCGACTGCAGTCC
CTACGAGGTCGTCATCCTGACCGACATTTGTGTTGCGCCGCAGGATCCCC
AGCGGCTGCACATCAACAAACCGCGCCAGGAACTATCCATGGCAAGCTTT
CTAGACCAT
BO13275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4596-RA | 1278 | CG4596-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4596-RA | 2357 | CG4596-RA | 155..1429 | 17..1291 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10873522..10874654 | 159..1291 | 5665 | 100 | Plus |
3R | 32079331 | 3R | 10873192..10873338 | 17..163 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:47 has no hits.
BO13275.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:36 Download gff for
BO13275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4596-RA | 153..1427 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:48 Download gff for
BO13275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4596-RA | 155..1429 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:29 Download gff for
BO13275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4596-RA | 153..1427 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:35 Download gff for
BO13275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4596-RA | 155..1429 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:35 Download gff for
BO13275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10873192..10873338 | 17..163 | 100 | -> | Plus |
3R | 10873527..10874654 | 164..1293 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:48 Download gff for
BO13275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6698914..6699060 | 17..163 | 100 | -> | Plus |
arm_3R | 6699249..6700376 | 164..1293 | 99 | | Plus |
BO13275.pep Sequence
Translation from 16 to 1309
> BO13275.pep
MVGKGSSGLGGDTSTGSKERPVFIPPRKRQQTKSEAKKQNYVDHIVSVQQ
NRPKLSPSNPGLEEELRKSKLIIKNKQPLPQLPGELGVPSAHDTLASTHS
ASSTQHSQKSARSNSNLNELQNFESISQGTKSTSQRHESSTVTPSSCCYS
ESSLDAKLSKSQDCLSNRSSSKKRVNIRTSDLPGQGRNQRSSPEIANYED
LESGETSVLNNYDQSLERGYQARKEGGGNYLTMTGTIKRGRKKGQSVDLQ
INISREELEQLNAHAMASDTQKGGNLCCTCSCGTGLHILLISLFCLPFVT
VVSAVYSFYIGTLTWYNMFNYYCEERTYLHKILVTPLLFVIYPLAIVLCT
FGLGIYSGLRQLSLQYSSWVNDITDIEKGFYGWLCGFLRMPDCSPYEVVI
LTDICVAPQDPQRLHINKPRQELSMASFLDH
BO13275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4596-PA | 425 | CG4596-PA | 1..425 | 1..425 | 2221 | 100 | Plus |