Clone BO13275 Report

Search the DGRC for BO13275

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG4596-RA
Protein status:BO13275.pep: Imported from assembly
Sequenced Size:1309

Clone Sequence Records

BO13275.5prime Sequence

855 bp (724 high quality bases) assembled on 2006-05-08

> BO13275.5prime
GAAGTTATCAGTCGACATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAG
ACACCAGTACGGGCAGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAA
CGTCAACAAACCAAATCGGAGGCCAAGAAGCAGAACTATGTGGATCACAT
CGTCAGTGTGCAGCAAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGAC
TTGAAGAGGAGCTCCGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCG
CTGCCGCAGCTGCCGGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCT
GGCTAGCACCCACTCGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCA
GATCGAACAGTAATCTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAG
GGCACCAAGTCGACGTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAG
CAGCTGTTGCTATTCGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGC
AGGACTGCCTGAGCAACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGT
ACAAGCGATCTGCCCGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGAT
AGCCAACTACGAAGATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACT
ACGACCAGAGTCTAGAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGC
AACTACCTGACCATGACGGGCACCATTAAGCGGGGTCGCAAGAAGGGCCA
GTCCGTGGACCTACAGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGA
ACGCCCATGCGATGGCCAGCGACACACAGAAGGGTGGCAATTTGTGCTGC
CACTG

BO13275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4596-PA 1278 CG4596-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4596-RA 2357 CG4596-RA 155..988 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10873522..10874213 159..850 3460 100 Plus
3R 32079331 3R 10873192..10873338 17..163 735 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:06:02 has no hits.

BO13275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:37 Download gff for BO13275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4596-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:02 Download gff for BO13275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4596-PA 1..839 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:37 Download gff for BO13275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 155..993 17..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:54 Download gff for BO13275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 155..993 17..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:54 Download gff for BO13275.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10873192..10873338 17..163 100 -> Plus
3R 10873527..10874218 164..855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:37 Download gff for BO13275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6698914..6699060 17..163 100 -> Plus
arm_3R 6699249..6699940 164..855 99   Plus

BO13275.complete Sequence

1309 bp assembled on 2008-08-14

GenBank Submission: FJ632747

> BO13275.complete
GAAGTTATCAGTCGACATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAG
ACACCAGTACGGGCAGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAA
CGTCAACAAACCAAATCGGAGGCCAAGAAGCAGAACTATGTGGATCACAT
CGTCAGTGTGCAGCAAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGAC
TTGAAGAGGAGCTCCGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCG
CTGCCGCAGCTGCCGGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCT
GGCTAGCACCCACTCGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCA
GATCGAACAGTAATCTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAG
GGCACCAAGTCGACGTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAG
CAGCTGTTGCTATTCGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGC
AGGACTGCCTGAGCAACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGT
ACAAGCGATCTGCCCGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGAT
AGCCAACTACGAAGATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACT
ACGACCAGAGTCTAGAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGC
AACTACCTGACCATGACGGGCACCATTAAGCGGGGTCGCAAGAAGGGCCA
GTCCGTGGACCTACAGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGA
ACGCCCATGCGATGGCCAGCGACACACAGAAGGGTGGCAATTTGTGCTGC
ACCTGCAGCTGTGGCACCGGCCTCCACATCCTGCTCATCTCGCTCTTTTG
CCTGCCGTTTGTGACCGTCGTTTCGGCGGTATACTCCTTCTACATTGGAA
CGCTCACCTGGTACAATATGTTCAACTATTACTGCGAGGAGAGGACGTAC
CTGCACAAGATCCTGGTGACGCCGCTGCTGTTCGTGATCTATCCGCTGGC
CATCGTGCTGTGCACCTTCGGACTGGGCATCTACTCGGGATTGCGGCAGC
TGAGTCTGCAGTACAGCAGTTGGGTGAACGACATCACGGATATCGAGAAG
GGATTCTACGGCTGGTTGTGCGGATTCCTTCGCATGCCCGACTGCAGTCC
CTACGAGGTCGTCATCCTGACCGACATTTGTGTTGCGCCGCAGGATCCCC
AGCGGCTGCACATCAACAAACCGCGCCAGGAACTATCCATGGCAAGCTTT
CTAGACCAT

BO13275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4596-RA 1278 CG4596-PA 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4596-RA 2357 CG4596-RA 155..1429 17..1291 6375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10873522..10874654 159..1291 5665 100 Plus
3R 32079331 3R 10873192..10873338 17..163 735 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:49:47 has no hits.

BO13275.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:36 Download gff for BO13275.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 153..1427 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:48 Download gff for BO13275.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 155..1429 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:29 Download gff for BO13275.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 153..1427 17..1293 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:35 Download gff for BO13275.complete
Subject Subject Range Query Range Percent Splice Strand
CG4596-RA 155..1429 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:35 Download gff for BO13275.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10873192..10873338 17..163 100 -> Plus
3R 10873527..10874654 164..1293 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:48 Download gff for BO13275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6698914..6699060 17..163 100 -> Plus
arm_3R 6699249..6700376 164..1293 99   Plus

BO13275.pep Sequence

Translation from 16 to 1309

> BO13275.pep
MVGKGSSGLGGDTSTGSKERPVFIPPRKRQQTKSEAKKQNYVDHIVSVQQ
NRPKLSPSNPGLEEELRKSKLIIKNKQPLPQLPGELGVPSAHDTLASTHS
ASSTQHSQKSARSNSNLNELQNFESISQGTKSTSQRHESSTVTPSSCCYS
ESSLDAKLSKSQDCLSNRSSSKKRVNIRTSDLPGQGRNQRSSPEIANYED
LESGETSVLNNYDQSLERGYQARKEGGGNYLTMTGTIKRGRKKGQSVDLQ
INISREELEQLNAHAMASDTQKGGNLCCTCSCGTGLHILLISLFCLPFVT
VVSAVYSFYIGTLTWYNMFNYYCEERTYLHKILVTPLLFVIYPLAIVLCT
FGLGIYSGLRQLSLQYSSWVNDITDIEKGFYGWLCGFLRMPDCSPYEVVI
LTDICVAPQDPQRLHINKPRQELSMASFLDH

BO13275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4596-PA 425 CG4596-PA 1..425 1..425 2221 100 Plus