Clone Sequence Records
BO13278.complete Sequence
1846 bp assembled on 2008-11-10
GenBank Submission: KX797795
> BO13278.complete
GAAGTTATCAGTCGACATGAATCTGATCAACATGGACTCGGAAAACAGGG
TGGTGCTCAATGTGGGTGGCATTAGGCACGAAACCTACAAGGCCACGCTG
AAGAAGATTCCGGCTACGCGATTATCGCGATTAACAGAGGCGCTGGCCAA
CTATGATCCGATACTGAATGAGTACTTCTTTGATCGGCATCCGGGCGTCT
TCGCACAAGTGCTCAACTATTACAGAACTGGAAAGCTGCATTATCCCACG
GATGTGTGCGGTCCGCTGTTTGAGGAGGAATTGGAGTTCTGGGGCCTAGA
CTCGAACCAAGTGGAGCCCTGCTGTTGGATGACCTACACACAGCATCGCG
ACACCCAGGAAACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAA
AAACCGTCCGAAGAGGAATTGGCACGCAAATTCGGCTTCGAGGAGGACTA
CTACAAAGGCACAATATCCTGGTGGCAGGAAATGAAGCCGCGCATTTGGT
CCTTGTTCGATGAGCCCTACAGTTCCAATGCAGCCAAGACTATTGGCGTG
GTTTCGGTGTTCTTCATCTGCATTTCGATCCTGTCGTTCTGCCTGAAGAC
CCATCCCGATATGCGGGTACCCATCGTCCGGAACATTACAGTGAAAACTG
CGAATGGAAGTAATGGCTGGTTTTTGGACAAAACGCAGACCAATGCGCAC
ATAGCCTTCTTCTATATCGAATGCGTGTGCAATGCCTGGTTTACCTTTGA
AATATTGGTGCGCTTTATCTCATCGCCGAACAAGTGGGAGTTCATCAAGT
CATCTGTTAACATCATAGACTACATAGCGACGCTTAGTTTTTATATCGAT
CTAGTGCTTCAGCGGTTCGCATCGCACCTGGAGAACGCTGACATCCTCGA
GTTCTTCTCGATCATCCGCATCATGCGTCTGTTCAAGCTGACGCGCCACT
CGTCCGGACTGAAGATCCTGATCCAGACGTTCCGGGCCTCGGCCAAGGAG
CTGACCCTGCTGGTGTTCTTCCTCGTCCTGGGCATCGTGATCTTCGCCAG
CCTTGTCTACTACGCGGAGCGCATCCAGCCCAATCCGCACAACGACTTCA
ACAGCATACCGCTGGGCCTGTGGTGGGCCCTGGTCACAATGACCACCGTC
GGCTACGGCGACATGGCCCCCAAAACCTACATCGGCATGTTCGTGGGCGC
CCTCTGCGCCCTGGCCGGCGTACTAACCATCGCACTGCCAGTGCCCGTCA
TCGTCAGCAACTTCGCCATGTACTACTCGCACACGCAGGCCAGGGCCAAA
CTGCCAAAGAAGCGGAGACGAGTGCTTCCCGTCGAGCAGCCGCGCCAGCC
CAGACTGCCAGGTGCCCCTGGTGGTGTCAGTGGTTGCGGTACCCCGGGCT
CGGGTCCCCACTCCGGTCCCATGGGATCCGGCGGTACTGGACCACGTCGC
ATGAACAATAAAACAAAGGACCTGGTCAGCCCCAAGTCAGTTGCTCAACT
TTTCGCAGGTCCGCTGGGCGCAAGCATTGTGGCCATGAGTCCCCGGACAA
TGCTGGATCTCAATCCTGCCCTGGCGATGGGCAAGCCTACGTTTCAGCCC
CGTATACCCACCCCCCTGGCAGCCACGCCCCCTCCCCCCGTGAGTTCCGC
TGGGGGGATGACAGCGTCTGGAATTGGAACTACTTCAGCCACTGGAGCCA
CTAGTGCACCACAACCAGCAACACCACTACCCAGCATTGCGGTGTCCACC
ACAGCGAGTGTGGGCAAGGATTTGGGCATCTCGACCACCACCACCACGGC
CCAGGAGACCAGCAAGAAGGCCTTCCTCGCAAGCTTTCTAGACCAT
BO13278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shaw-RC | 1860 | CG2822-PC | 45..1857 | 16..1828 | 9065 | 100 | Plus |
Shaw-RB | 1815 | CG2822-PB | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Shaw-RE | 1797 | CG2822-PE | 1..1794 | 17..1828 | 8755 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shaw-RC | 2428 | CG2822-RC | 45..1857 | 16..1828 | 9065 | 100 | Plus |
Shaw-RB | 2840 | CG2822-RB | 457..2269 | 16..1828 | 9065 | 100 | Plus |
Shaw-RE | 4380 | CG2822-RE | 457..2251 | 16..1828 | 8760 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3722652..3723259 | 757..1364 | 3040 | 100 | Plus |
2L | 23513712 | 2L | 3726677..3727016 | 1489..1828 | 1700 | 100 | Plus |
2L | 23513712 | 2L | 3722351..3722573 | 537..759 | 1115 | 100 | Plus |
2L | 23513712 | 2L | 3721380..3721589 | 16..225 | 1050 | 100 | Plus |
2L | 23513712 | 2L | 3721820..3722017 | 341..538 | 990 | 100 | Plus |
2L | 23513712 | 2L | 3723633..3723764 | 1359..1490 | 660 | 100 | Plus |
2L | 23513712 | 2L | 3721640..3721762 | 221..343 | 615 | 100 | Plus |
2L | 23513712 | 2L | 9380049..9380257 | 1289..1081 | 490 | 82.3 | Minus |
2L | 23513712 | 2L | 9380430..9380595 | 1069..904 | 335 | 80.1 | Minus |
2L | 23513712 | 2L | 9384640..9384785 | 225..80 | 295 | 80.1 | Minus |
2L | 23513712 | 2L | 9381661..9381765 | 328..224 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:58:08 has no hits.
BO13278.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:55 Download gff for
BO13278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-RC | 41..1862 | 9..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:13 Download gff for
BO13278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-RB | 458..2269 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:34 Download gff for
BO13278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-RC | 46..1857 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:19 Download gff for
BO13278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-RB | 458..2269 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:19 Download gff for
BO13278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3723636..3723764 | 1362..1490 | 100 | -> | Plus |
2L | 3726679..3727016 | 1491..1830 | 99 | | Plus |
2L | 3721381..3721589 | 17..225 | 100 | -> | Plus |
2L | 3721645..3721762 | 226..343 | 100 | -> | Plus |
2L | 3721823..3722017 | 344..538 | 100 | -> | Plus |
2L | 3722353..3722571 | 539..757 | 100 | -> | Plus |
2L | 3722653..3723256 | 758..1361 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:13 Download gff for
BO13278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3723636..3723764 | 1362..1490 | 100 | -> | Plus |
arm_2L | 3721381..3721589 | 17..225 | 100 | -> | Plus |
arm_2L | 3721645..3721762 | 226..343 | 100 | -> | Plus |
arm_2L | 3721823..3722017 | 344..538 | 100 | -> | Plus |
arm_2L | 3722353..3722571 | 539..757 | 100 | -> | Plus |
arm_2L | 3722653..3723256 | 758..1361 | 100 | -> | Plus |
arm_2L | 3726679..3727016 | 1491..1830 | 99 | | Plus |
BO13278.3prime Sequence
651 bp (625 high quality bases) assembled on 2006-05-08
> BO13278.3prime
ATGGTCTAGAAAGCTTGCGAGGAAGGCCTTCTTGCTGGTCTCCTGGGCCG
TGGTGGTGGTGGTCGAGATGCCCAAATCCTTGCCCACACTCGCTGTGGTG
GACACCGCAATGCTGGGTAGTGGTGTTGCTGGTTGTGGTGCACTAGTGGC
TCCAGTGGCTGAAGTAGTTCCAATTCCAGACGCTGTCATCCCCCCAGCGG
AACTCACGGGGGGAGGGGGCGTGGCTGCCAGGGGGGTGGGTATACGGGGC
TGAAACGTAGGCTTGCCCATCGCCAGGGCAGGATTGAGATCCAGCATTGT
CCGGGGACTCATGGCCACAATGCTTGCGCCCAGCGGACCTGCGAAAAGTT
GAGCAACTGACTTGGGGCTGACCAGGTCCTTTGTTTTATTGTTCATGCGA
CGTGGTCCAGTACCGCCGGATCCCATGGGACCGGAGTGGGGACCCGAGCC
CGGGGTACCGCAACCACTGACACCACCAGGGGCACCTGGCAGTCTGGGCT
GGCGCGGCTGCTCGACGGGAAGCACTCGTCTCCGCTTCTTTGGCAGTTTG
GCCCTGGCCTGCGTGTGCGAGTAGTACATGGCGAAGTTGCTGACGATGAC
GGGCACTGGCAGTGCGATGGTTAGTACGCCGGCCAGGGCGCAAAGGGCGC
C
BO13278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2822-PB | 1815 | Shaw-RB | 1180..1812 | 651..19 | 3140 | 99.8 | Minus |
CG2822-PA | 1497 | Shaw-RA | 1180..1474 | 651..357 | 1450 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shaw-RC | 2428 | CG2822-RC | 1225..1857 | 651..19 | 3150 | 99.8 | Minus |
Shaw-RB | 2840 | CG2822-RB | 1637..2269 | 651..19 | 3150 | 99.8 | Minus |
Shaw-RE | 4380 | CG2822-RE | 1637..2251 | 651..19 | 2870 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:23:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3726677..3727016 | 358..19 | 1700 | 100 | Minus |
2L | 23513712 | 2L | 3723091..3723259 | 651..483 | 830 | 99.4 | Minus |
2L | 23513712 | 2L | 3723633..3723764 | 488..357 | 660 | 100 | Minus |
2L | 23513712 | 2L | 9380049..9380139 | 558..648 | 230 | 83.5 | Plus |
X | 23542271 | X | 17942876..17942938 | 583..645 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:23:24 has no hits.
BO13278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:40 Download gff for
BO13278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-PB | 1180..1815 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:05 Download gff for
BO13278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2822-PB | 1180..1815 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:23 Download gff for
BO13278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-RB | 1637..2274 | 14..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:21 Download gff for
BO13278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-RB | 1637..2274 | 14..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:21 Download gff for
BO13278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3723091..3723256 | 486..651 | 99 | -> | Minus |
2L | 3723636..3723764 | 357..485 | 100 | -> | Minus |
2L | 3726679..3727021 | 14..356 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:23 Download gff for
BO13278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3723091..3723256 | 486..651 | 99 | -> | Minus |
arm_2L | 3723636..3723764 | 357..485 | 100 | -> | Minus |
arm_2L | 3726679..3727021 | 14..356 | 99 | | Minus |
BO13278.5prime Sequence
659 bp (657 high quality bases) assembled on 2006-05-08
> BO13278.5prime
GAAGTTATCCCCCTACGTGAATCTGATCAACATGGACTCGGAAAACAGGG
TGGTGCTCAATGTGGGTGGCATTAGGCACGAAACCTACAAGGCCACGCTG
AAGAAGATTCCGGCTACGCGATTATCGCGATTAACAGAGGCGCTGGCCAA
CTATGATCCGATACTGAATGAGTACTTCTTTGATCGGCATCCGGGCGTCT
TCGCACAAGTGCTCAACTATTACAGAACTGGAAAGCTGCATTATCCCACG
GATGTGTGCGGTCCGCTGTTTGAGGAGGAATTGGAGTTCTGGGGCCTAGA
CTCGAACCAAGTGGAGCCCTGCTGTTGGATGACCTACACACAGCATCGCG
ACACCCAGGAAACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAA
AAACCGTCCGAAGAGGAATTGGCACGCAAATTCGGCTTCGAGGAGGACTA
CTACAAAGGCACAATATCCTGGTGGCAGGAAATGAAGCCGCGCATTTGGT
CCTTGTTCGATGAGCCCTACAGTTCCAATGCAGCCAAGACTATTGGCGTG
GTTTCGGTGTTCTTCATCTGCATTTCGATCCTGTCGTTCTGCCTGAAGAC
CCATCCCGATATGCGGGTACCCTTCGTCCGGAACATTACAGTGAAAACTG
CGAATGGAA
BO13278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2822-PA | 1497 | Shaw-RA | 2..643 | 18..659 | 3185 | 99.8 | Plus |
CG2822-PB | 1815 | Shaw-RB | 2..643 | 18..659 | 3185 | 99.8 | Plus |
CG4450-PA | 2154 | CG4450-RA | 238..305 | 212..279 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shaw-RE | 4380 | CG2822-RE | 459..1100 | 18..659 | 3195 | 99.8 | Plus |
Shaw-RD | 4557 | CG2822-RD | 305..946 | 18..659 | 3195 | 99.8 | Plus |
Shaw-RC | 2428 | CG2822-RC | 47..688 | 18..659 | 3195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3721382..3721589 | 18..225 | 1040 | 100 | Plus |
2L | 23513712 | 2L | 3721820..3722017 | 341..538 | 990 | 100 | Plus |
2L | 23513712 | 2L | 3721640..3721762 | 221..343 | 615 | 100 | Plus |
2L | 23513712 | 2L | 3722351..3722473 | 537..659 | 600 | 99.2 | Plus |
2L | 23513712 | 2L | 9384640..9384785 | 225..80 | 295 | 80.1 | Minus |
2L | 23513712 | 2L | 9381661..9381765 | 328..224 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 08:55:59 has no hits.
BO13278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:41 Download gff for
BO13278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-PA | 2..641 | 18..657 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:06 Download gff for
BO13278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2822-PB | 2..641 | 18..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:14:27 Download gff for
BO13278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-RC | 44..688 | 12..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:22 Download gff for
BO13278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shaw-RC | 44..688 | 12..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:22 Download gff for
BO13278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3721379..3721589 | 12..225 | 98 | -> | Plus |
2L | 3721645..3721762 | 226..343 | 100 | -> | Plus |
2L | 3721823..3722017 | 344..538 | 100 | -> | Plus |
2L | 3722353..3722473 | 539..659 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:14:27 Download gff for
BO13278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3721379..3721589 | 12..225 | 98 | -> | Plus |
arm_2L | 3721645..3721762 | 226..343 | 100 | -> | Plus |
arm_2L | 3721823..3722017 | 344..538 | 100 | -> | Plus |
arm_2L | 3722353..3722473 | 539..659 | 99 | | Plus |
BO13278.pep Sequence
Translation from 16 to 1846
> BO13278.pep
MNLINMDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPIL
NEYFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVE
PCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEELARKFGFEEDYYKGTI
SWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMR
VPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRF
ISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSII
RIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYA
ERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALA
GVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRQPRLPGA
PGGVSGCGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLFAGPL
GASIVAMSPRTMLDLNPALAMGKPTFQPRIPTPLAATPPPPVSSAGGMTA
SGIGTTSATGATSAPQPATPLPSIAVSTTASVGKDLGISTTTTTAQETSK
KAFLASFLDH
BO13278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shaw-PC | 619 | CG2822-PC | 16..619 | 1..604 | 3168 | 100 | Plus |
Shaw-PB | 604 | CG2822-PB | 1..604 | 1..604 | 3168 | 100 | Plus |
Shaw-PE | 598 | CG2822-PE | 1..598 | 1..604 | 3124 | 99 | Plus |
Shaw-PD | 510 | CG2822-PD | 1..491 | 1..491 | 2606 | 100 | Plus |
Shaw-PA | 498 | CG2822-PA | 1..491 | 1..491 | 2606 | 100 | Plus |