Clone BO13278 Report

Search the DGRC for BO13278

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptShaw-RB
Protein status:BO13278.pep: Imported from assembly
Sequenced Size:1846

Clone Sequence Records

BO13278.complete Sequence

1846 bp assembled on 2008-11-10

GenBank Submission: KX797795

> BO13278.complete
GAAGTTATCAGTCGACATGAATCTGATCAACATGGACTCGGAAAACAGGG
TGGTGCTCAATGTGGGTGGCATTAGGCACGAAACCTACAAGGCCACGCTG
AAGAAGATTCCGGCTACGCGATTATCGCGATTAACAGAGGCGCTGGCCAA
CTATGATCCGATACTGAATGAGTACTTCTTTGATCGGCATCCGGGCGTCT
TCGCACAAGTGCTCAACTATTACAGAACTGGAAAGCTGCATTATCCCACG
GATGTGTGCGGTCCGCTGTTTGAGGAGGAATTGGAGTTCTGGGGCCTAGA
CTCGAACCAAGTGGAGCCCTGCTGTTGGATGACCTACACACAGCATCGCG
ACACCCAGGAAACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAA
AAACCGTCCGAAGAGGAATTGGCACGCAAATTCGGCTTCGAGGAGGACTA
CTACAAAGGCACAATATCCTGGTGGCAGGAAATGAAGCCGCGCATTTGGT
CCTTGTTCGATGAGCCCTACAGTTCCAATGCAGCCAAGACTATTGGCGTG
GTTTCGGTGTTCTTCATCTGCATTTCGATCCTGTCGTTCTGCCTGAAGAC
CCATCCCGATATGCGGGTACCCATCGTCCGGAACATTACAGTGAAAACTG
CGAATGGAAGTAATGGCTGGTTTTTGGACAAAACGCAGACCAATGCGCAC
ATAGCCTTCTTCTATATCGAATGCGTGTGCAATGCCTGGTTTACCTTTGA
AATATTGGTGCGCTTTATCTCATCGCCGAACAAGTGGGAGTTCATCAAGT
CATCTGTTAACATCATAGACTACATAGCGACGCTTAGTTTTTATATCGAT
CTAGTGCTTCAGCGGTTCGCATCGCACCTGGAGAACGCTGACATCCTCGA
GTTCTTCTCGATCATCCGCATCATGCGTCTGTTCAAGCTGACGCGCCACT
CGTCCGGACTGAAGATCCTGATCCAGACGTTCCGGGCCTCGGCCAAGGAG
CTGACCCTGCTGGTGTTCTTCCTCGTCCTGGGCATCGTGATCTTCGCCAG
CCTTGTCTACTACGCGGAGCGCATCCAGCCCAATCCGCACAACGACTTCA
ACAGCATACCGCTGGGCCTGTGGTGGGCCCTGGTCACAATGACCACCGTC
GGCTACGGCGACATGGCCCCCAAAACCTACATCGGCATGTTCGTGGGCGC
CCTCTGCGCCCTGGCCGGCGTACTAACCATCGCACTGCCAGTGCCCGTCA
TCGTCAGCAACTTCGCCATGTACTACTCGCACACGCAGGCCAGGGCCAAA
CTGCCAAAGAAGCGGAGACGAGTGCTTCCCGTCGAGCAGCCGCGCCAGCC
CAGACTGCCAGGTGCCCCTGGTGGTGTCAGTGGTTGCGGTACCCCGGGCT
CGGGTCCCCACTCCGGTCCCATGGGATCCGGCGGTACTGGACCACGTCGC
ATGAACAATAAAACAAAGGACCTGGTCAGCCCCAAGTCAGTTGCTCAACT
TTTCGCAGGTCCGCTGGGCGCAAGCATTGTGGCCATGAGTCCCCGGACAA
TGCTGGATCTCAATCCTGCCCTGGCGATGGGCAAGCCTACGTTTCAGCCC
CGTATACCCACCCCCCTGGCAGCCACGCCCCCTCCCCCCGTGAGTTCCGC
TGGGGGGATGACAGCGTCTGGAATTGGAACTACTTCAGCCACTGGAGCCA
CTAGTGCACCACAACCAGCAACACCACTACCCAGCATTGCGGTGTCCACC
ACAGCGAGTGTGGGCAAGGATTTGGGCATCTCGACCACCACCACCACGGC
CCAGGAGACCAGCAAGAAGGCCTTCCTCGCAAGCTTTCTAGACCAT

BO13278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Shaw-RC 1860 CG2822-PC 45..1857 16..1828 9065 100 Plus
Shaw-RB 1815 CG2822-PB 1..1812 17..1828 9060 100 Plus
Shaw-RE 1797 CG2822-PE 1..1794 17..1828 8755 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Shaw-RC 2428 CG2822-RC 45..1857 16..1828 9065 100 Plus
Shaw-RB 2840 CG2822-RB 457..2269 16..1828 9065 100 Plus
Shaw-RE 4380 CG2822-RE 457..2251 16..1828 8760 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3722652..3723259 757..1364 3040 100 Plus
2L 23513712 2L 3726677..3727016 1489..1828 1700 100 Plus
2L 23513712 2L 3722351..3722573 537..759 1115 100 Plus
2L 23513712 2L 3721380..3721589 16..225 1050 100 Plus
2L 23513712 2L 3721820..3722017 341..538 990 100 Plus
2L 23513712 2L 3723633..3723764 1359..1490 660 100 Plus
2L 23513712 2L 3721640..3721762 221..343 615 100 Plus
2L 23513712 2L 9380049..9380257 1289..1081 490 82.3 Minus
2L 23513712 2L 9380430..9380595 1069..904 335 80.1 Minus
2L 23513712 2L 9384640..9384785 225..80 295 80.1 Minus
2L 23513712 2L 9381661..9381765 328..224 240 81.9 Minus
Blast to na_te.dros performed on 2014-11-27 12:58:08 has no hits.

BO13278.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:55 Download gff for BO13278.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 41..1862 9..1833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:13 Download gff for BO13278.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 458..2269 17..1830 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:34 Download gff for BO13278.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 46..1857 17..1830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:19 Download gff for BO13278.complete
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 458..2269 17..1830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:19 Download gff for BO13278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3723636..3723764 1362..1490 100 -> Plus
2L 3726679..3727016 1491..1830 99   Plus
2L 3721381..3721589 17..225 100 -> Plus
2L 3721645..3721762 226..343 100 -> Plus
2L 3721823..3722017 344..538 100 -> Plus
2L 3722353..3722571 539..757 100 -> Plus
2L 3722653..3723256 758..1361 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:13 Download gff for BO13278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3723636..3723764 1362..1490 100 -> Plus
arm_2L 3721381..3721589 17..225 100 -> Plus
arm_2L 3721645..3721762 226..343 100 -> Plus
arm_2L 3721823..3722017 344..538 100 -> Plus
arm_2L 3722353..3722571 539..757 100 -> Plus
arm_2L 3722653..3723256 758..1361 100 -> Plus
arm_2L 3726679..3727016 1491..1830 99   Plus

BO13278.3prime Sequence

651 bp (625 high quality bases) assembled on 2006-05-08

> BO13278.3prime
ATGGTCTAGAAAGCTTGCGAGGAAGGCCTTCTTGCTGGTCTCCTGGGCCG
TGGTGGTGGTGGTCGAGATGCCCAAATCCTTGCCCACACTCGCTGTGGTG
GACACCGCAATGCTGGGTAGTGGTGTTGCTGGTTGTGGTGCACTAGTGGC
TCCAGTGGCTGAAGTAGTTCCAATTCCAGACGCTGTCATCCCCCCAGCGG
AACTCACGGGGGGAGGGGGCGTGGCTGCCAGGGGGGTGGGTATACGGGGC
TGAAACGTAGGCTTGCCCATCGCCAGGGCAGGATTGAGATCCAGCATTGT
CCGGGGACTCATGGCCACAATGCTTGCGCCCAGCGGACCTGCGAAAAGTT
GAGCAACTGACTTGGGGCTGACCAGGTCCTTTGTTTTATTGTTCATGCGA
CGTGGTCCAGTACCGCCGGATCCCATGGGACCGGAGTGGGGACCCGAGCC
CGGGGTACCGCAACCACTGACACCACCAGGGGCACCTGGCAGTCTGGGCT
GGCGCGGCTGCTCGACGGGAAGCACTCGTCTCCGCTTCTTTGGCAGTTTG
GCCCTGGCCTGCGTGTGCGAGTAGTACATGGCGAAGTTGCTGACGATGAC
GGGCACTGGCAGTGCGATGGTTAGTACGCCGGCCAGGGCGCAAAGGGCGC
C

BO13278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2822-PB 1815 Shaw-RB 1180..1812 651..19 3140 99.8 Minus
CG2822-PA 1497 Shaw-RA 1180..1474 651..357 1450 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Shaw-RC 2428 CG2822-RC 1225..1857 651..19 3150 99.8 Minus
Shaw-RB 2840 CG2822-RB 1637..2269 651..19 3150 99.8 Minus
Shaw-RE 4380 CG2822-RE 1637..2251 651..19 2870 97 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3726677..3727016 358..19 1700 100 Minus
2L 23513712 2L 3723091..3723259 651..483 830 99.4 Minus
2L 23513712 2L 3723633..3723764 488..357 660 100 Minus
2L 23513712 2L 9380049..9380139 558..648 230 83.5 Plus
X 23542271 X 17942876..17942938 583..645 180 85.7 Plus
Blast to na_te.dros performed on 2015-02-12 12:23:24 has no hits.

BO13278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:40 Download gff for BO13278.3prime
Subject Subject Range Query Range Percent Splice Strand
Shaw-PB 1180..1815 15..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:05 Download gff for BO13278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2822-PB 1180..1815 15..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:23 Download gff for BO13278.3prime
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 1637..2274 14..651 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:21 Download gff for BO13278.3prime
Subject Subject Range Query Range Percent Splice Strand
Shaw-RB 1637..2274 14..651 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:21 Download gff for BO13278.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3723091..3723256 486..651 99 -> Minus
2L 3723636..3723764 357..485 100 -> Minus
2L 3726679..3727021 14..356 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:23 Download gff for BO13278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3723091..3723256 486..651 99 -> Minus
arm_2L 3723636..3723764 357..485 100 -> Minus
arm_2L 3726679..3727021 14..356 99   Minus

BO13278.5prime Sequence

659 bp (657 high quality bases) assembled on 2006-05-08

> BO13278.5prime
GAAGTTATCCCCCTACGTGAATCTGATCAACATGGACTCGGAAAACAGGG
TGGTGCTCAATGTGGGTGGCATTAGGCACGAAACCTACAAGGCCACGCTG
AAGAAGATTCCGGCTACGCGATTATCGCGATTAACAGAGGCGCTGGCCAA
CTATGATCCGATACTGAATGAGTACTTCTTTGATCGGCATCCGGGCGTCT
TCGCACAAGTGCTCAACTATTACAGAACTGGAAAGCTGCATTATCCCACG
GATGTGTGCGGTCCGCTGTTTGAGGAGGAATTGGAGTTCTGGGGCCTAGA
CTCGAACCAAGTGGAGCCCTGCTGTTGGATGACCTACACACAGCATCGCG
ACACCCAGGAAACCCTAGCCGTACTCGATCGTCTCGATCTGGATACGGAA
AAACCGTCCGAAGAGGAATTGGCACGCAAATTCGGCTTCGAGGAGGACTA
CTACAAAGGCACAATATCCTGGTGGCAGGAAATGAAGCCGCGCATTTGGT
CCTTGTTCGATGAGCCCTACAGTTCCAATGCAGCCAAGACTATTGGCGTG
GTTTCGGTGTTCTTCATCTGCATTTCGATCCTGTCGTTCTGCCTGAAGAC
CCATCCCGATATGCGGGTACCCTTCGTCCGGAACATTACAGTGAAAACTG
CGAATGGAA

BO13278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2822-PA 1497 Shaw-RA 2..643 18..659 3185 99.8 Plus
CG2822-PB 1815 Shaw-RB 2..643 18..659 3185 99.8 Plus
CG4450-PA 2154 CG4450-RA 238..305 212..279 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Shaw-RE 4380 CG2822-RE 459..1100 18..659 3195 99.8 Plus
Shaw-RD 4557 CG2822-RD 305..946 18..659 3195 99.8 Plus
Shaw-RC 2428 CG2822-RC 47..688 18..659 3195 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3721382..3721589 18..225 1040 100 Plus
2L 23513712 2L 3721820..3722017 341..538 990 100 Plus
2L 23513712 2L 3721640..3721762 221..343 615 100 Plus
2L 23513712 2L 3722351..3722473 537..659 600 99.2 Plus
2L 23513712 2L 9384640..9384785 225..80 295 80.1 Minus
2L 23513712 2L 9381661..9381765 328..224 240 81.9 Minus
Blast to na_te.dros performed on 2015-02-09 08:55:59 has no hits.

BO13278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:41 Download gff for BO13278.5prime
Subject Subject Range Query Range Percent Splice Strand
Shaw-PA 2..641 18..657 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:06 Download gff for BO13278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2822-PB 2..641 18..657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:14:27 Download gff for BO13278.5prime
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 44..688 12..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:22 Download gff for BO13278.5prime
Subject Subject Range Query Range Percent Splice Strand
Shaw-RC 44..688 12..659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:22 Download gff for BO13278.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3721379..3721589 12..225 98 -> Plus
2L 3721645..3721762 226..343 100 -> Plus
2L 3721823..3722017 344..538 100 -> Plus
2L 3722353..3722473 539..659 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:14:27 Download gff for BO13278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3721379..3721589 12..225 98 -> Plus
arm_2L 3721645..3721762 226..343 100 -> Plus
arm_2L 3721823..3722017 344..538 100 -> Plus
arm_2L 3722353..3722473 539..659 99   Plus

BO13278.pep Sequence

Translation from 16 to 1846

> BO13278.pep
MNLINMDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPIL
NEYFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVE
PCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEELARKFGFEEDYYKGTI
SWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMR
VPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRF
ISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSII
RIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYA
ERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALA
GVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRQPRLPGA
PGGVSGCGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLFAGPL
GASIVAMSPRTMLDLNPALAMGKPTFQPRIPTPLAATPPPPVSSAGGMTA
SGIGTTSATGATSAPQPATPLPSIAVSTTASVGKDLGISTTTTTAQETSK
KAFLASFLDH

BO13278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Shaw-PC 619 CG2822-PC 16..619 1..604 3168 100 Plus
Shaw-PB 604 CG2822-PB 1..604 1..604 3168 100 Plus
Shaw-PE 598 CG2822-PE 1..598 1..604 3124 99 Plus
Shaw-PD 510 CG2822-PD 1..491 1..491 2606 100 Plus
Shaw-PA 498 CG2822-PA 1..491 1..491 2606 100 Plus