Clone Sequence Records
BO13279.complete Sequence
1549 bp assembled on 2010-04-13
GenBank Submission: KX799845
> BO13279.complete
GAAGTTATCAGTCGACATGTCTACCTTTGGCGCTGAAGTGGATCAGGTTT
GGCCAGCGGTCACCGGTGATTCCCCGCATCTCACTAATTTCGGACGCAAA
TTGCTGAAGGATTGCCGCCAAGTGCAGAAACCAATCGGAGGATACGAAAA
TTTGGGCAATGTGATTAAATTGTCCGCGGAGTTTCCGCTGGAGTTCGGCG
TGAACAGTGTCAAAGTATACCGGCAATCTCCATCGCGGCTTGCCCGGATA
AATGAGGAAGTGGCATCCGCCTATCCATTGATACACGAACGTACATTGGG
CCTCTACTTGCAGTACTTGGAGCACAAGTGTCGTTGGGGCAACGCGGTGG
AAAAGCCCATCTACCGGAATTTATCGCTATGCGGATTTGTGCAACGTCTG
CTGGTAAAGCGTTGCGCCAGCTTCTTTGCGCGGAACGACAAGTACCTGCT
GGTGAGCGGAGAGTCCGGGGCCAGTGGCTTCGAAGCCGTGGGTACTCGGG
AGGAGAAGGCGCCTCTGGTGCTGGCCAACGTGCTCAGCTATGACGATATC
AAGCTCTCCGCCCTGCTTTCCGTGAGCTCCCGCACGGAGTTTGTCAATGA
GGGCGAACGAACCAATTGCGGTCACGTTGATCTGAACACGAAAACTTTGG
AACGTCACGGGGTTATTGTGGGCATGATTGGAGCCCGTCTGTCGCGACGT
AATCTAATGGAGTTCCAGGACATTGTAATCGCACGTCAGCAGAATACGCG
TGAAAGGGGCTACGGAATGGCATTGGATGAGCCGGCTACCACGCGTGATG
AGGACTATCGACGACTGTGGCGCGAGTTCTATGCCACACGGGATCTCATC
CACGGCCAGGCAGTCATTGACAATCAGCGTTTCGGACCATCGAAAAACAA
GATGGACGTGTTCGACAATCTGGTGATGAAGCGGCGTTACGCCATCAGCT
TCGACATGCTGCTGCTGGAGGCAGAGGCAAGGGCAAAACGCGTGAAAAAG
CTGGCGTACATCCATGTGGTGGGCTTCGGCTTGGGCGTGTGGAAGGCAGC
AGAACAGCAGGAGCGCATCTTCATGGAGACCTTCGAGCAGCGTATGCGCA
CGCTGGGCAACAGGCTCAATAACGTTGGCCTCGTGCACTTCTCCTGGTTT
TCGATCACACATTGCGGCGGTCTAAGCAACGGATCGCTGATAGAGATTCC
CGGGCATCCAAAGGATGGCATCAGGGTGCTCATTTCCAAGCGCAATCCAG
CACGAAAATTGAGTGATCCTGAGCACGCCGGAATGCTGCTGGTAGTCTCT
TACGCTTGGGATGGAAACGCCCTGCCGGGTAATGAATTCTGGATGAAAAT
GCTGCAGTCCACAGGTGACTCCTCGACGGCCTGCTCCACGTTGGTGGCCG
AGCTGCACAATCCGTACATAAACACGAAATTCTGCAATGGAGGCAACCTG
CACATCGCCTCACCGGAGCACGGGGTGCTCCACATAGCCGAATATGCCAA
GCGGGTGATTCGGAGCGAGAGTGACGCCTTAGCAAGCTTTCTAGACCAT
BO13279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2909-RA | 1518 | CG2909-PA | 1..1515 | 17..1531 | 7560 | 99.9 | Plus |
CG3568-RA | 1527 | CG3568-PA | 1033..1095 | 1010..1072 | 180 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2909-RA | 2018 | CG2909-RA | 154..1669 | 16..1531 | 7565 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10327065..10328072 | 338..1345 | 5025 | 99.9 | Plus |
X | 23542271 | X | 10328411..10328597 | 1345..1531 | 935 | 100 | Plus |
X | 23542271 | X | 10326617..10326794 | 16..193 | 890 | 100 | Plus |
X | 23542271 | X | 10326857..10327004 | 192..339 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:57:29 has no hits.
BO13279.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:48 Download gff for
BO13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2909-RA | 148..1662 | 17..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:17 Download gff for
BO13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2909-RA | 155..1669 | 17..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:07 Download gff for
BO13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2909-RA | 155..1669 | 17..1533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:07 Download gff for
BO13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10326618..10326794 | 17..193 | 100 | -> | Plus |
X | 10326859..10327003 | 194..338 | 100 | -> | Plus |
X | 10327066..10328072 | 339..1345 | 99 | -> | Plus |
X | 10328412..10328597 | 1346..1533 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:17 Download gff for
BO13279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10220651..10220827 | 17..193 | 100 | -> | Plus |
arm_X | 10220892..10221036 | 194..338 | 100 | -> | Plus |
arm_X | 10221099..10222105 | 339..1345 | 99 | -> | Plus |
arm_X | 10222445..10222630 | 1346..1533 | 98 | | Plus |
BO13279.5prime Sequence
722 bp (652 high quality bases) assembled on 2006-05-08
> BO13279.5prime
GAAGTTATCACTCGACATGTCTACCTTTGGCGCTGAAGTGGATCAGGTTT
GGCCAGCGGTCACCGGTGATTCCCCGCATCTCACTAATTTCGGACGCAAA
TTGCTGAAGGATTGCCGCCAAGTGCAGAAACCAATCGGAGGATACGAAAA
TTTGGGCAATGTGATTAAATTGTCCGCGGAGTTTCCGCTGGAGTTCGGCG
TGAACAGTGTCAAAGTATACCGGCAATCTCCATCGCGGCTTGCCCGGATA
AATGAGGAAGTGGCATCCGCCTATCCATTGATACACGAACGTACATTGGG
CCTCTACTTGCAGTACTTGGAGCACAAGTGTCGTTGGGGCAACGCGGTGG
AAAAGCCCATCTACCGGAATTTATCGCTATGCGGATTTGTGCAACGTCTG
CTGGTAAAGCGTTGCGCCAGCTTCTTTGCGCGGAACGACAAGTACCTGCT
GGTGAGCGGAGAGTCCGGGGCCAGTGGCTTCGAAGCCGTGGGTACTCGGG
AGGAGAAGGCGCCTCTGGTGCTGGCCAACGTGCTCAGCTATGACGATATC
AAGCTCTCCGCCCTGCTTTCCGTGAGCTCCCGCACGGAGTTTGTCAATGA
GGGCGAACGAACCAATTGCGGTCACGTTGATCTGAACACGAAAACTTTTG
GAACGTCACGGGGTTTATTGTGGGCATGATTGGAGCCCGTCTGTCGCGAC
GTAATCTAATGAATTTCCAGGA
BO13279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2909-PA | 1518 | CG2909-RA | 1..632 | 17..648 | 3135 | 99.8 | Plus |
CG2909-PA | 1518 | CG2909-RA | 647..704 | 665..722 | 240 | 96.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2909-RA | 2018 | CG2909-RA | 154..858 | 16..722 | 3440 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10327065..10327447 | 338..722 | 1780 | 98.7 | Plus |
X | 23542271 | X | 10326617..10326794 | 16..193 | 890 | 100 | Plus |
X | 23542271 | X | 10326857..10327004 | 192..339 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:56:08 has no hits.
BO13279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:42 Download gff for
BO13279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2909-PA | 1..703 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:08 Download gff for
BO13279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2909-PA | 1..703 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:05 Download gff for
BO13279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2909-RA | 147..857 | 9..721 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:49 Download gff for
BO13279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2909-RA | 147..857 | 9..721 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:49 Download gff for
BO13279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10326610..10326794 | 9..193 | 97 | -> | Plus |
X | 10326859..10327003 | 194..338 | 100 | -> | Plus |
X | 10327066..10327446 | 339..721 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:05 Download gff for
BO13279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10220643..10220827 | 9..193 | 97 | -> | Plus |
arm_X | 10220892..10221036 | 194..338 | 100 | -> | Plus |
arm_X | 10221099..10221479 | 339..721 | 98 | | Plus |
BO13279.pep Sequence
Translation from 16 to 1549
> BO13279.pep
MSTFGAEVDQVWPAVTGDSPHLTNFGRKLLKDCRQVQKPIGGYENLGNVI
KLSAEFPLEFGVNSVKVYRQSPSRLARINEEVASAYPLIHERTLGLYLQY
LEHKCRWGNAVEKPIYRNLSLCGFVQRLLVKRCASFFARNDKYLLVSGES
GASGFEAVGTREEKAPLVLANVLSYDDIKLSALLSVSSRTEFVNEGERTN
CGHVDLNTKTLERHGVIVGMIGARLSRRNLMEFQDIVIARQQNTRERGYG
MALDEPATTRDEDYRRLWREFYATRDLIHGQAVIDNQRFGPSKNKMDVFD
NLVMKRRYAISFDMLLLEAEARAKRVKKLAYIHVVGFGLGVWKAAEQQER
IFMETFEQRMRTLGNRLNNVGLVHFSWFSITHCGGLSNGSLIEIPGHPKD
GIRVLISKRNPARKLSDPEHAGMLLVVSYAWDGNALPGNEFWMKMLQSTG
DSSTACSTLVAELHNPYINTKFCNGGNLHIASPEHGVLHIAEYAKRVIRS
ESDALASFLDH
BO13279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2909-PA | 505 | CG2909-PA | 1..505 | 1..505 | 2635 | 100 | Plus |
CG3568-PA | 508 | CG3568-PA | 24..507 | 11..498 | 1277 | 51.8 | Plus |