Clone BO13279 Report

Search the DGRC for BO13279

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG2909-RA
Protein status:BO13279.pep: Imported from assembly
Sequenced Size:1549

Clone Sequence Records

BO13279.complete Sequence

1549 bp assembled on 2010-04-13

GenBank Submission: KX799845

> BO13279.complete
GAAGTTATCAGTCGACATGTCTACCTTTGGCGCTGAAGTGGATCAGGTTT
GGCCAGCGGTCACCGGTGATTCCCCGCATCTCACTAATTTCGGACGCAAA
TTGCTGAAGGATTGCCGCCAAGTGCAGAAACCAATCGGAGGATACGAAAA
TTTGGGCAATGTGATTAAATTGTCCGCGGAGTTTCCGCTGGAGTTCGGCG
TGAACAGTGTCAAAGTATACCGGCAATCTCCATCGCGGCTTGCCCGGATA
AATGAGGAAGTGGCATCCGCCTATCCATTGATACACGAACGTACATTGGG
CCTCTACTTGCAGTACTTGGAGCACAAGTGTCGTTGGGGCAACGCGGTGG
AAAAGCCCATCTACCGGAATTTATCGCTATGCGGATTTGTGCAACGTCTG
CTGGTAAAGCGTTGCGCCAGCTTCTTTGCGCGGAACGACAAGTACCTGCT
GGTGAGCGGAGAGTCCGGGGCCAGTGGCTTCGAAGCCGTGGGTACTCGGG
AGGAGAAGGCGCCTCTGGTGCTGGCCAACGTGCTCAGCTATGACGATATC
AAGCTCTCCGCCCTGCTTTCCGTGAGCTCCCGCACGGAGTTTGTCAATGA
GGGCGAACGAACCAATTGCGGTCACGTTGATCTGAACACGAAAACTTTGG
AACGTCACGGGGTTATTGTGGGCATGATTGGAGCCCGTCTGTCGCGACGT
AATCTAATGGAGTTCCAGGACATTGTAATCGCACGTCAGCAGAATACGCG
TGAAAGGGGCTACGGAATGGCATTGGATGAGCCGGCTACCACGCGTGATG
AGGACTATCGACGACTGTGGCGCGAGTTCTATGCCACACGGGATCTCATC
CACGGCCAGGCAGTCATTGACAATCAGCGTTTCGGACCATCGAAAAACAA
GATGGACGTGTTCGACAATCTGGTGATGAAGCGGCGTTACGCCATCAGCT
TCGACATGCTGCTGCTGGAGGCAGAGGCAAGGGCAAAACGCGTGAAAAAG
CTGGCGTACATCCATGTGGTGGGCTTCGGCTTGGGCGTGTGGAAGGCAGC
AGAACAGCAGGAGCGCATCTTCATGGAGACCTTCGAGCAGCGTATGCGCA
CGCTGGGCAACAGGCTCAATAACGTTGGCCTCGTGCACTTCTCCTGGTTT
TCGATCACACATTGCGGCGGTCTAAGCAACGGATCGCTGATAGAGATTCC
CGGGCATCCAAAGGATGGCATCAGGGTGCTCATTTCCAAGCGCAATCCAG
CACGAAAATTGAGTGATCCTGAGCACGCCGGAATGCTGCTGGTAGTCTCT
TACGCTTGGGATGGAAACGCCCTGCCGGGTAATGAATTCTGGATGAAAAT
GCTGCAGTCCACAGGTGACTCCTCGACGGCCTGCTCCACGTTGGTGGCCG
AGCTGCACAATCCGTACATAAACACGAAATTCTGCAATGGAGGCAACCTG
CACATCGCCTCACCGGAGCACGGGGTGCTCCACATAGCCGAATATGCCAA
GCGGGTGATTCGGAGCGAGAGTGACGCCTTAGCAAGCTTTCTAGACCAT

BO13279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2909-RA 1518 CG2909-PA 1..1515 17..1531 7560 99.9 Plus
CG3568-RA 1527 CG3568-PA 1033..1095 1010..1072 180 85.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2909-RA 2018 CG2909-RA 154..1669 16..1531 7565 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10327065..10328072 338..1345 5025 99.9 Plus
X 23542271 X 10328411..10328597 1345..1531 935 100 Plus
X 23542271 X 10326617..10326794 16..193 890 100 Plus
X 23542271 X 10326857..10327004 192..339 740 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:57:29 has no hits.

BO13279.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:48 Download gff for BO13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 148..1662 17..1533 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:17 Download gff for BO13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 155..1669 17..1533 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:07 Download gff for BO13279.complete
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 155..1669 17..1533 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:07 Download gff for BO13279.complete
Subject Subject Range Query Range Percent Splice Strand
X 10326618..10326794 17..193 100 -> Plus
X 10326859..10327003 194..338 100 -> Plus
X 10327066..10328072 339..1345 99 -> Plus
X 10328412..10328597 1346..1533 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:17 Download gff for BO13279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10220651..10220827 17..193 100 -> Plus
arm_X 10220892..10221036 194..338 100 -> Plus
arm_X 10221099..10222105 339..1345 99 -> Plus
arm_X 10222445..10222630 1346..1533 98   Plus

BO13279.5prime Sequence

722 bp (652 high quality bases) assembled on 2006-05-08

> BO13279.5prime
GAAGTTATCACTCGACATGTCTACCTTTGGCGCTGAAGTGGATCAGGTTT
GGCCAGCGGTCACCGGTGATTCCCCGCATCTCACTAATTTCGGACGCAAA
TTGCTGAAGGATTGCCGCCAAGTGCAGAAACCAATCGGAGGATACGAAAA
TTTGGGCAATGTGATTAAATTGTCCGCGGAGTTTCCGCTGGAGTTCGGCG
TGAACAGTGTCAAAGTATACCGGCAATCTCCATCGCGGCTTGCCCGGATA
AATGAGGAAGTGGCATCCGCCTATCCATTGATACACGAACGTACATTGGG
CCTCTACTTGCAGTACTTGGAGCACAAGTGTCGTTGGGGCAACGCGGTGG
AAAAGCCCATCTACCGGAATTTATCGCTATGCGGATTTGTGCAACGTCTG
CTGGTAAAGCGTTGCGCCAGCTTCTTTGCGCGGAACGACAAGTACCTGCT
GGTGAGCGGAGAGTCCGGGGCCAGTGGCTTCGAAGCCGTGGGTACTCGGG
AGGAGAAGGCGCCTCTGGTGCTGGCCAACGTGCTCAGCTATGACGATATC
AAGCTCTCCGCCCTGCTTTCCGTGAGCTCCCGCACGGAGTTTGTCAATGA
GGGCGAACGAACCAATTGCGGTCACGTTGATCTGAACACGAAAACTTTTG
GAACGTCACGGGGTTTATTGTGGGCATGATTGGAGCCCGTCTGTCGCGAC
GTAATCTAATGAATTTCCAGGA

BO13279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2909-PA 1518 CG2909-RA 1..632 17..648 3135 99.8 Plus
CG2909-PA 1518 CG2909-RA 647..704 665..722 240 96.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2909-RA 2018 CG2909-RA 154..858 16..722 3440 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10327065..10327447 338..722 1780 98.7 Plus
X 23542271 X 10326617..10326794 16..193 890 100 Plus
X 23542271 X 10326857..10327004 192..339 740 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:56:08 has no hits.

BO13279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:42 Download gff for BO13279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2909-PA 1..703 17..721 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:08 Download gff for BO13279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2909-PA 1..703 17..721 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:05 Download gff for BO13279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 147..857 9..721 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:49 Download gff for BO13279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2909-RA 147..857 9..721 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:49 Download gff for BO13279.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10326610..10326794 9..193 97 -> Plus
X 10326859..10327003 194..338 100 -> Plus
X 10327066..10327446 339..721 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:05 Download gff for BO13279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10220643..10220827 9..193 97 -> Plus
arm_X 10220892..10221036 194..338 100 -> Plus
arm_X 10221099..10221479 339..721 98   Plus

BO13279.pep Sequence

Translation from 16 to 1549

> BO13279.pep
MSTFGAEVDQVWPAVTGDSPHLTNFGRKLLKDCRQVQKPIGGYENLGNVI
KLSAEFPLEFGVNSVKVYRQSPSRLARINEEVASAYPLIHERTLGLYLQY
LEHKCRWGNAVEKPIYRNLSLCGFVQRLLVKRCASFFARNDKYLLVSGES
GASGFEAVGTREEKAPLVLANVLSYDDIKLSALLSVSSRTEFVNEGERTN
CGHVDLNTKTLERHGVIVGMIGARLSRRNLMEFQDIVIARQQNTRERGYG
MALDEPATTRDEDYRRLWREFYATRDLIHGQAVIDNQRFGPSKNKMDVFD
NLVMKRRYAISFDMLLLEAEARAKRVKKLAYIHVVGFGLGVWKAAEQQER
IFMETFEQRMRTLGNRLNNVGLVHFSWFSITHCGGLSNGSLIEIPGHPKD
GIRVLISKRNPARKLSDPEHAGMLLVVSYAWDGNALPGNEFWMKMLQSTG
DSSTACSTLVAELHNPYINTKFCNGGNLHIASPEHGVLHIAEYAKRVIRS
ESDALASFLDH

BO13279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2909-PA 505 CG2909-PA 1..505 1..505 2635 100 Plus
CG3568-PA 508 CG3568-PA 24..507 11..498 1277 51.8 Plus