Clone Sequence Records
BO13280.complete Sequence
1516 bp assembled on 2009-09-17
GenBank Submission: FJ632748
> BO13280.complete
GAAGTTATCAGTCGACATGATGCCATACCTTCGCCGCCTTTTCAGCCAGG
AGCTCTCTCCGGCTGCTCAGGGCGATTTTCTGGGCTGCTTGCAGCAGGCG
CCCAGTGTCCTGGCCACCGGATTCCCTGGAGCACCCGCACTGGAGAGCCT
AAGTTGGTTACACAACCTAGCGCCGTGCTTCCCGCTGCGAGGCGATCAAA
TTCAGGTCATCCACGAGCCAAAGCACTTCTACGAAACGCTGGTGCAACGA
ATCGGTCAGGCCAAACGCCGTATAGTGCTGGCCAGTTTGTACCTGGGCAC
TGGGCAACTGGAGAACGCAATGGTTCAGACGTTGCGTCACAGCCTGGAGC
AACAGTCTGCCCTGAGGCTCAACGTGCTGTTGGACTTTACACGCGGCACG
CGGGGAACCCTCAACTCCAAGACCATGTTGCTACCCCTGGTCCGCGACTT
TGCGAGCCAGGTGCAGCTATCCCTGTACCATACGCCTGATCTGCGCGGGA
TGACAAAGCGACTAGCACCGCCACGGTGGAATGAGCTTCTCGGACTACAG
CACATGAAGGTCTACCTGTTCGACGATGCCGTGATCATATCAGGCGCCAA
TCTGTCCAATGACTACTTCACCAACCGGCAGGATCGATACATACTCATTG
AGGACAAACCGTTGGCGGATTTCTATGCGCAGTTCATCGAACGCGTTCAA
GAGTTTAGTTTGGCAGTGGCGCCAGATGCCAGCGAGGGACTGCACCGCAA
CTGGCGAATACTGCCGTACGAGGGCACCAAGGAGCAGTTTATCCAGCTTG
CCCGTAAACGTATTTCCGATTTAGTGCAGGAGACGTTTCAGCGGCAGGCG
CGAACTAAAGAGCAGAATCCGCAGGCAGACACATGGATTTTTCCGCTGCT
TGAGATGGGCCAGATCGGCATTCATCACGACAGCGTGGTGACCAAGCGGC
TGCTCTCCAACTGCTTGTCTGGATCACGGCTGAAACTGGCCACCGGGTAC
TTCAACCTGACGCAGGAGTACATGGACACGCTCACGCACAAGTGCCTGGC
CCAATGCAGCATACTGATGGCTCATCCAAATGCAAACGGCTTTCAGGGTG
CCAAAGGACCAGCGGGCGGAATTCCGGCTGCCTACACACTGATAGCCAAG
AGTTTCTACGAGAGCCTGGTCCGCCGGAAGCAAAACCACCGCGTTAACTT
CTTCGAGTACGAAAAGCCCGGCTGGACGTACCATGCTAAAGGACTGTGGT
ACTACCTGCCAGAGGCAATACTGCCAAACCTCACGCTGATCGGCTCTTCG
AACTTTGGCGAGCGATCGGTGAACCGCGATCTGGAGACACAGGTGTGCCT
TGTGACGGCTAATAAGGATCTAAGCCAGCGGCTGCAGGCGGAAGCTGACC
GGCTGTACGATCTGTCACAGACGGCGGAGCGGGAAATCGTCCAACGACCC
GTTCCGCGATGGGTCCAGGCCGTCGTTCGCATATTCAGGAATTTCTTCGC
AAGCTTTCTAGACCAT
BO13280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-RA | 1485 | CG7718-PA | 1..1482 | 17..1498 | 7410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-RA | 1921 | CG7718-RA | 249..1730 | 17..1498 | 7410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18744728..18745793 | 1082..17 | 5330 | 100 | Minus |
| 3R | 32079331 | 3R | 18744254..18744670 | 1498..1082 | 2085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:39:38 has no hits.
BO13280.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:10 Download gff for
BO13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 249..1730 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:02 Download gff for
BO13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 249..1730 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:08 Download gff for
BO13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 249..1730 | 17..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:54 Download gff for
BO13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 249..1730 | 17..1500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:54 Download gff for
BO13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18744252..18744670 | 1082..1500 | 99 | <- | Minus |
| 3R | 18744729..18745793 | 17..1081 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:02 Download gff for
BO13280.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14569974..14570392 | 1082..1500 | 99 | <- | Minus |
| arm_3R | 14570451..14571515 | 17..1081 | 100 | | Minus |
BO13280.3prime Sequence
735 bp (621 high quality bases) assembled on 2006-05-08
> BO13280.3prime
ATGGTCTAGAAAGCTTGCGAAGAAATTCCTGAATATGCGAACGACGGCCT
GGACCCATCGCGGAACGGGTCGTTGGACGATTTCCCGCTCCGCCGTCTGT
GACAGATCGTACAGCCGGTCAGCTTCCGCCTGCAGCCGCTGGCTTAGATC
CTTATTAGCCGTCACAAGGCACACCTGTGTCTCCAGATCGCGGTTCACCG
ATCGCTCGCCAAAGTTCGAAGAGCCGATCAGCGTGAGGTTTGGCAGTATT
GCCTCTGGCAGGTAGTACCACAGTCCTTTAGCATGGTACGTCCAGCCGGG
CTTTTCGTACTCGAAGAAGTTAACGCGGTGGTTTTGCTTCCGGCGGACCA
GGCTCTCGTAGAAACTCTTGGCTATCAGTGTGTAGGCAGCCGGAATTCCG
CCCGCTGGTCCTTTGGCACCCTGAAAGCCGTTTGCATTTGGATGAGCCAT
CAGTATGCTGCATTGGGCCAGGCACTTGTGCGTGAGCGTGTCCATGTACT
CCTGCGTCAGGTTGAAGTACCCGGTGGCCAGTTTCAGCCGTGATCCAGAC
AAGCAGTTGGAGAGCAGCCGCTTGGTCACCACGCTGTCGTGATGAATGCC
GATCTGGCCCATCTCAAGCAGCGGAAAAATCCATGTGTCTGCCTGCGGAT
TCTGCTCTTTAGTTCCCGCCTGCCGCTGAAACGTCTCCTGCACTAAATCG
GAAATACGTTTACGGGCAAGCTGGATAAACTGCTC
BO13280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-PA | 1485 | CG7718-RA | 766..1482 | 735..19 | 3560 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-RA | 1921 | CG7718-RA | 1014..1730 | 735..19 | 3570 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18744254..18744670 | 19..435 | 2085 | 100 | Plus |
| 3R | 32079331 | 3R | 18744728..18745028 | 435..735 | 1490 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:26:19 has no hits.
BO13280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:43 Download gff for
BO13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-PA | 766..1485 | 18..735 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:09 Download gff for
BO13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-PA | 766..1485 | 18..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:46:02 Download gff for
BO13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 1014..1740 | 9..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:32 Download gff for
BO13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 1014..1740 | 9..735 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:32 Download gff for
BO13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18744244..18744670 | 9..435 | 99 | <- | Plus |
| 3R | 18744729..18745028 | 436..735 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:46:02 Download gff for
BO13280.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14569966..14570392 | 9..435 | 99 | <- | Plus |
| arm_3R | 14570451..14570750 | 436..735 | 99 | | Plus |
BO13280.5prime Sequence
733 bp (699 high quality bases) assembled on 2006-05-08
> BO13280.5prime
GAAGTTATCCCTCGACGTGATGCCATACCTTCGCCGCCTTTTCAGCCAGG
AGCTCTCTCCGGCTGCTCAGGGCGATTTTCTGGGCTGCTTGCAGCAGGCG
CCCAGTGTCCTGGCCACCGGATTCCCTGGAGCACCCGCACTGGAGAGCCT
AAGTTGGTTACACAACCTAGCGCCGTGCTTCCCGCTGCGAGGCGATCAAA
TTCAGGTCATCCACGAGCCAAAGCACTTCTACGAAACGCTGGTGCAACGA
ATCGGTCAGGCCAAACGCCGTATAGTGCTGGCCAGTTTGTACCTGGGCAC
TGGGCAACTGGAGAACGCAATGGTTCAGACGTTGCGTCACAGCCTGGAGC
AACAGTCTGCCCTGAGGCTCAACGTGCTGTTGGACTTTACACGCGGCACG
CGGGGAACCCTCAACTCCAAGACCATGTTGCTACCCCTGGTCCGCGACTT
TGCGAGCCAGGTGCAGCTATCCCTGTACCATACGCCTGATCTGCGCGGGA
TGACAAAGCGACTAGCACCGCCACGGTGGAATGAGCTTCTCGGACTACAG
CACATGAAGGTCTACCTGTTCGACGATGCCGTGATCATATCAGGCGCCAA
TCTGTCCAATGACTACTTCACCAACCGGCAGGATCGATACATACTCATTG
AGGACAAACCGTTGGCGGATTTCTATGCGCAGTTCATCGAACGCGTTCAA
GAGTTTAGTTTGGCAGTGGCGCCAGATGCCAGC
BO13280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-PA | 1485 | CG7718-RA | 2..717 | 18..733 | 3580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-RA | 1921 | CG7718-RA | 250..965 | 18..733 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18745077..18745792 | 733..18 | 3580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:55:59 has no hits.
BO13280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:44 Download gff for
BO13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-PA | 2..717 | 18..733 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:11 Download gff for
BO13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-PA | 2..717 | 18..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:03 Download gff for
BO13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 240..965 | 9..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:59:48 Download gff for
BO13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7718-RA | 240..965 | 9..733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:59:48 Download gff for
BO13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18745077..18745802 | 9..733 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:03 Download gff for
BO13280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14570799..14571524 | 9..733 | 99 | | Minus |
BO13280.pep Sequence
Translation from 16 to 1516
> BO13280.pep
MMPYLRRLFSQELSPAAQGDFLGCLQQAPSVLATGFPGAPALESLSWLHN
LAPCFPLRGDQIQVIHEPKHFYETLVQRIGQAKRRIVLASLYLGTGQLEN
AMVQTLRHSLEQQSALRLNVLLDFTRGTRGTLNSKTMLLPLVRDFASQVQ
LSLYHTPDLRGMTKRLAPPRWNELLGLQHMKVYLFDDAVIISGANLSNDY
FTNRQDRYILIEDKPLADFYAQFIERVQEFSLAVAPDASEGLHRNWRILP
YEGTKEQFIQLARKRISDLVQETFQRQARTKEQNPQADTWIFPLLEMGQI
GIHHDSVVTKRLLSNCLSGSRLKLATGYFNLTQEYMDTLTHKCLAQCSIL
MAHPNANGFQGAKGPAGGIPAAYTLIAKSFYESLVRRKQNHRVNFFEYEK
PGWTYHAKGLWYYLPEAILPNLTLIGSSNFGERSVNRDLETQVCLVTANK
DLSQRLQAEADRLYDLSQTAEREIVQRPVPRWVQAVVRIFRNFFASFLDH
BO13280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7718-PA | 494 | CG7718-PA | 1..494 | 1..494 | 2574 | 100 | Plus |
