Clone BO13284 Report

Search the DGRC for BO13284

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG6776-RA
Protein status:BO13284.pep: Imported from assembly
Sequenced Size:757

Clone Sequence Records

BO13284.5prime Sequence

752 bp (750 high quality bases) assembled on 2006-05-08

> BO13284.5prime
GAAGTTATCCCTTTAAGTGAGTTCTGGTAAACATTTGGCCAAAGGTTCCC
CCAAGCCTGTACTCCCTGACGATGGAGTCCTTCGCCTGTACTCCATGAGG
TTCTGTCCCTACGCTCAGCGGGCTCATCTCGTCCTGAACGCCAAGAATGT
GCCCTATCACAGTGTCTACATCAATCTCACCGAGAAACCAGAGTGGCTGG
TGGAAGTGAGTCCGTTGCTTAAGGTGCCTGCCCTGCAGCTGGTGGCGGAG
AAGGGTGAGCCCTCGCTCATCGAGTCGCTGATTATTGCCGAGTATCTGGA
CGATAAGTACCCGGAGAATCCGTTGCTGCCCAAGGACCCATTGAAGCGGG
CACAGGACAAGATTCTGCTGGAACGTTTCAGCAGCATCACCAGTGCCTTC
ATAAACATCCTTGTGCAGGGCACCGGTCTGGAGGATTACTGGACGGCACT
TGATATCTTTGAGGAGGAGTTGACCAAGCGGGGCACCCCATATTTTGGCG
GCAACAAGCCGGGATTCGTGGACTACATGATCTGGCCCTGGTTCGAACGC
CTCTCTGTAATCGAGTTGAAGTTGCAGAAGGAGTACAACTTTCACGAGAG
TCGTTTCCCGAAGATCACCAAGTGGATTTGCCCTCCTGAAGGCGGACTCG
GTGGTGCAGTCCTTCTATGCCACTCCCGAGCAGCACAACGAGTTCTGGCG
CACCCGCAAGGCCGGCAATGCAAACTACGATCTGCTGGCTGCAAGCTTTT
CT

BO13284.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6776-PA 726 CG6776-RA 2..612 18..628 3005 99.6 Plus
CG6776-PA 726 CG6776-RA 611..723 628..740 565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
GstO3-RA 881 CG6776-RA 71..792 18..740 3560 99.6 Plus
se-RA 825 CG6781-RA 54..226 32..204 280 78.2 Plus
GstO2-RB 912 CG6673-RB 514..618 442..546 210 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8519510..8520206 43..740 3410 99.6 Plus
3L 28110227 3L 8520700..8520833 71..204 250 79.1 Plus
3L 28110227 3L 8522705..8522809 546..442 195 79 Minus
Blast to na_te.dros performed on 2015-02-02 09:31:37 has no hits.

BO13284.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:47 Download gff for BO13284.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6776-PA 2..726 18..741 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:15 Download gff for BO13284.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6776-PA 2..726 18..741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:22 Download gff for BO13284.5prime
Subject Subject Range Query Range Percent Splice Strand
GstO3-RA 68..792 15..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:33 Download gff for BO13284.5prime
Subject Subject Range Query Range Percent Splice Strand
GstO3-RA 68..792 15..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:33 Download gff for BO13284.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8518952..8518981 15..44 96 -> Plus
3L 8519512..8520206 45..740 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:22 Download gff for BO13284.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8512052..8512081 15..44 96 -> Plus
arm_3L 8512612..8513306 45..740 99   Plus

BO13284.complete Sequence

757 bp assembled on 2010-07-02

GenBank Submission: KX793892

> BO13284.complete
GAAGTTATCAGTCGACATGAGTTCTGGTAAACATTTGGCCAAAGGTTCCC
CCAAGCCTGTACTCCCTGACGATGGAGTCCTTCGCCTGTACTCCATGAGG
TTCTGTCCCTACGCTCAGCGGGCTCATCTCGTCCTGAACGCCAAGAATGT
GCCCTATCACAGTGTCTACATCAATCTCACCGAGAAACCAGAGTGGCTGG
TGGAAGTGAGTCCGTTGCTTAAGGTGCCTGCCCTGCAGCTGGTGGCGGAG
AAGGGTGAGCCCTCGCTCATCGAGTCGCTGATTATTGCCGAGTATCTGGA
CGATAAGTACCCGGAGAATCCGTTGCTGCCCAAGGACCCATTGAAGCGGG
CACAGGACAAGATTCTGCTGGAACGTTTCAGCAGCATCACCAGTGCCTTC
ATAAACATCCTTGTGCAGGGCACCGGTCTGGAGGATTACTGGACGGCACT
TGATATCTTTGAGGAGGAGTTGACCAAGCGGGGCACCCCATATTTTGGCG
GCAACAAGCCGGGATTCGTGGACTACATGATCTGGCCCTGGTTCGAACGC
CTCTCTGTAATCGAGTTGAAGTTGCAGAAGGAGTACAACTTCAACGAGAG
TCGTTTCCCGAAGATCACCAAGTGGATTGCCCTCCTGAAGGCGGACTCGG
TGGTGCAGTCCTTCTATGCCACTCCCGAGCAGCACAACGAGTTCTGGCGC
ACCCGCAAGGCCGGCAATGCAAACTACGATCTGCTGGCTGCAAGCTTTCT
AGACCAT

BO13284.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
GstO3-RA 726 CG6776-PA 1..723 17..739 3615 100 Plus
se-RA 732 CG6781-PA 16..188 32..204 280 77.5 Plus
GstO2-RB 753 CG6673-PB 444..548 442..546 195 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
GstO3-RA 881 CG6776-RA 70..792 17..739 3615 100 Plus
se-RA 825 CG6781-RA 54..226 32..204 280 77.5 Plus
GstO2-RB 912 CG6673-RB 514..618 442..546 195 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8519510..8520206 43..739 3485 100 Plus
3L 28110227 3L 8520700..8520833 71..204 250 79.1 Plus
3L 28110227 3L 8522705..8522809 546..442 195 79 Minus
Blast to na_te.dros performed on 2014-11-28 02:18:38 has no hits.

BO13284.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:33 Download gff for BO13284.complete
Subject Subject Range Query Range Percent Splice Strand
CG6776-RA 67..789 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:17 Download gff for BO13284.complete
Subject Subject Range Query Range Percent Splice Strand
GstO3-RA 70..792 17..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:25 Download gff for BO13284.complete
Subject Subject Range Query Range Percent Splice Strand
GstO3-RA 70..792 17..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:25 Download gff for BO13284.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8518954..8518981 17..44 100 -> Plus
3L 8519512..8520206 45..741 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:17 Download gff for BO13284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8512054..8512081 17..44 100 -> Plus
arm_3L 8512612..8513306 45..741 99   Plus

BO13284.pep Sequence

Translation from 16 to 757

> BO13284.pep
MSSGKHLAKGSPKPVLPDDGVLRLYSMRFCPYAQRAHLVLNAKNVPYHSV
YINLTEKPEWLVEVSPLLKVPALQLVAEKGEPSLIESLIIAEYLDDKYPE
NPLLPKDPLKRAQDKILLERFSSITSAFINILVQGTGLEDYWTALDIFEE
ELTKRGTPYFGGNKPGFVDYMIWPWFERLSVIELKLQKEYNFNESRFPKI
TKWIALLKADSVVQSFYATPEQHNEFWRTRKAGNANYDLLAASFLDH

BO13284.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
GstO3-PA 241 CG6776-PA 1..241 1..241 1272 100 Plus
se-PA 243 CG6781-PA 1..239 1..240 775 57.1 Plus
GstO1-PA 254 CG6662-PA 1..244 1..240 684 50.8 Plus
GstO2-PB 250 CG6673-PB 6..245 5..239 669 51.7 Plus
GstO2-PA 251 CG6673-PA 6..245 5..239 624 48.3 Plus