Clone Sequence Records
BO13284.5prime Sequence
752 bp (750 high quality bases) assembled on 2006-05-08
> BO13284.5prime
GAAGTTATCCCTTTAAGTGAGTTCTGGTAAACATTTGGCCAAAGGTTCCC
CCAAGCCTGTACTCCCTGACGATGGAGTCCTTCGCCTGTACTCCATGAGG
TTCTGTCCCTACGCTCAGCGGGCTCATCTCGTCCTGAACGCCAAGAATGT
GCCCTATCACAGTGTCTACATCAATCTCACCGAGAAACCAGAGTGGCTGG
TGGAAGTGAGTCCGTTGCTTAAGGTGCCTGCCCTGCAGCTGGTGGCGGAG
AAGGGTGAGCCCTCGCTCATCGAGTCGCTGATTATTGCCGAGTATCTGGA
CGATAAGTACCCGGAGAATCCGTTGCTGCCCAAGGACCCATTGAAGCGGG
CACAGGACAAGATTCTGCTGGAACGTTTCAGCAGCATCACCAGTGCCTTC
ATAAACATCCTTGTGCAGGGCACCGGTCTGGAGGATTACTGGACGGCACT
TGATATCTTTGAGGAGGAGTTGACCAAGCGGGGCACCCCATATTTTGGCG
GCAACAAGCCGGGATTCGTGGACTACATGATCTGGCCCTGGTTCGAACGC
CTCTCTGTAATCGAGTTGAAGTTGCAGAAGGAGTACAACTTTCACGAGAG
TCGTTTCCCGAAGATCACCAAGTGGATTTGCCCTCCTGAAGGCGGACTCG
GTGGTGCAGTCCTTCTATGCCACTCCCGAGCAGCACAACGAGTTCTGGCG
CACCCGCAAGGCCGGCAATGCAAACTACGATCTGCTGGCTGCAAGCTTTT
CT
BO13284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6776-PA | 726 | CG6776-RA | 2..612 | 18..628 | 3005 | 99.6 | Plus |
CG6776-PA | 726 | CG6776-RA | 611..723 | 628..740 | 565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO3-RA | 881 | CG6776-RA | 71..792 | 18..740 | 3560 | 99.6 | Plus |
se-RA | 825 | CG6781-RA | 54..226 | 32..204 | 280 | 78.2 | Plus |
GstO2-RB | 912 | CG6673-RB | 514..618 | 442..546 | 210 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8519510..8520206 | 43..740 | 3410 | 99.6 | Plus |
3L | 28110227 | 3L | 8520700..8520833 | 71..204 | 250 | 79.1 | Plus |
3L | 28110227 | 3L | 8522705..8522809 | 546..442 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:31:37 has no hits.
BO13284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:47 Download gff for
BO13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6776-PA | 2..726 | 18..741 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:15 Download gff for
BO13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6776-PA | 2..726 | 18..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:22 Download gff for
BO13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO3-RA | 68..792 | 15..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:33 Download gff for
BO13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO3-RA | 68..792 | 15..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:33 Download gff for
BO13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8518952..8518981 | 15..44 | 96 | -> | Plus |
3L | 8519512..8520206 | 45..740 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:22 Download gff for
BO13284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8512052..8512081 | 15..44 | 96 | -> | Plus |
arm_3L | 8512612..8513306 | 45..740 | 99 | | Plus |
BO13284.complete Sequence
757 bp assembled on 2010-07-02
GenBank Submission: KX793892
> BO13284.complete
GAAGTTATCAGTCGACATGAGTTCTGGTAAACATTTGGCCAAAGGTTCCC
CCAAGCCTGTACTCCCTGACGATGGAGTCCTTCGCCTGTACTCCATGAGG
TTCTGTCCCTACGCTCAGCGGGCTCATCTCGTCCTGAACGCCAAGAATGT
GCCCTATCACAGTGTCTACATCAATCTCACCGAGAAACCAGAGTGGCTGG
TGGAAGTGAGTCCGTTGCTTAAGGTGCCTGCCCTGCAGCTGGTGGCGGAG
AAGGGTGAGCCCTCGCTCATCGAGTCGCTGATTATTGCCGAGTATCTGGA
CGATAAGTACCCGGAGAATCCGTTGCTGCCCAAGGACCCATTGAAGCGGG
CACAGGACAAGATTCTGCTGGAACGTTTCAGCAGCATCACCAGTGCCTTC
ATAAACATCCTTGTGCAGGGCACCGGTCTGGAGGATTACTGGACGGCACT
TGATATCTTTGAGGAGGAGTTGACCAAGCGGGGCACCCCATATTTTGGCG
GCAACAAGCCGGGATTCGTGGACTACATGATCTGGCCCTGGTTCGAACGC
CTCTCTGTAATCGAGTTGAAGTTGCAGAAGGAGTACAACTTCAACGAGAG
TCGTTTCCCGAAGATCACCAAGTGGATTGCCCTCCTGAAGGCGGACTCGG
TGGTGCAGTCCTTCTATGCCACTCCCGAGCAGCACAACGAGTTCTGGCGC
ACCCGCAAGGCCGGCAATGCAAACTACGATCTGCTGGCTGCAAGCTTTCT
AGACCAT
BO13284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO3-RA | 726 | CG6776-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
se-RA | 732 | CG6781-PA | 16..188 | 32..204 | 280 | 77.5 | Plus |
GstO2-RB | 753 | CG6673-PB | 444..548 | 442..546 | 195 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO3-RA | 881 | CG6776-RA | 70..792 | 17..739 | 3615 | 100 | Plus |
se-RA | 825 | CG6781-RA | 54..226 | 32..204 | 280 | 77.5 | Plus |
GstO2-RB | 912 | CG6673-RB | 514..618 | 442..546 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8519510..8520206 | 43..739 | 3485 | 100 | Plus |
3L | 28110227 | 3L | 8520700..8520833 | 71..204 | 250 | 79.1 | Plus |
3L | 28110227 | 3L | 8522705..8522809 | 546..442 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:18:38 has no hits.
BO13284.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:33 Download gff for
BO13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6776-RA | 67..789 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:17 Download gff for
BO13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO3-RA | 70..792 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:25 Download gff for
BO13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO3-RA | 70..792 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:25 Download gff for
BO13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8518954..8518981 | 17..44 | 100 | -> | Plus |
3L | 8519512..8520206 | 45..741 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:17 Download gff for
BO13284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8512054..8512081 | 17..44 | 100 | -> | Plus |
arm_3L | 8512612..8513306 | 45..741 | 99 | | Plus |
BO13284.pep Sequence
Translation from 16 to 757
> BO13284.pep
MSSGKHLAKGSPKPVLPDDGVLRLYSMRFCPYAQRAHLVLNAKNVPYHSV
YINLTEKPEWLVEVSPLLKVPALQLVAEKGEPSLIESLIIAEYLDDKYPE
NPLLPKDPLKRAQDKILLERFSSITSAFINILVQGTGLEDYWTALDIFEE
ELTKRGTPYFGGNKPGFVDYMIWPWFERLSVIELKLQKEYNFNESRFPKI
TKWIALLKADSVVQSFYATPEQHNEFWRTRKAGNANYDLLAASFLDH
BO13284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO3-PA | 241 | CG6776-PA | 1..241 | 1..241 | 1272 | 100 | Plus |
se-PA | 243 | CG6781-PA | 1..239 | 1..240 | 775 | 57.1 | Plus |
GstO1-PA | 254 | CG6662-PA | 1..244 | 1..240 | 684 | 50.8 | Plus |
GstO2-PB | 250 | CG6673-PB | 6..245 | 5..239 | 669 | 51.7 | Plus |
GstO2-PA | 251 | CG6673-PA | 6..245 | 5..239 | 624 | 48.3 | Plus |