Clone BO13287 Report

Search the DGRC for BO13287

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptDet-RA
Protein status:BO13287.pep: validated full length
Sequenced Size:493

Clone Sequence Records

BO13287.3prime Sequence

491 bp (490 high quality bases) assembled on 2006-05-08

> BO13287.3prime
ATGGTCTAGAAAGCTTGCTTTTTGATTACGCGTAAACTCATCTAGACGCT
TCTCATTCTCCCGAACGAAGCTCGATTTGAAGGCTTTGCAGGTTTTCTCT
ATGCTGCCTTTAACGACGGTTCCAAGAATTTCCAGAAATTGTGATACGGT
TAAATTCCTTTCGGGACACGATAGCTTGGCGAACTCGCATTGGGGTGCAT
GTTTCACGTGCTCCTTCCACGGATCATCTTCGGGCTCCCAGCCATCCAGG
GTCTTTCCGCACACAAAACAAGTGGCAGTGTCGTTTTCCCGCTTGGTGCC
CGTCCAATAGAATCCCGCCTCGGCCATCTTCGAAATGCTGCAGGATGCGG
TCTCCGGAAAGGGCCAACTCTTGTAGCTCTCCACGCGATGCTGTTCCAGG
AGGTTCAGCTTGCGAAAGACCTCCAGCTTTTCACCGCCCAAGCTGGCTGC
AACTTCGTTTACCACTGGCGATTCCATGTCGACTGATAACT

BO13287.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12265-PA 462 CG12265-RA 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Det-RA 651 CG12265-RA 105..563 477..19 2295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17149996..17150181 329..144 930 100 Minus
3R 32079331 3R 17149771..17149920 477..328 750 100 Minus
3R 32079331 3R 17150239..17150367 147..19 645 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:33:58 has no hits.

BO13287.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:53 Download gff for BO13287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12265-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:22 Download gff for BO13287.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12265-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:04:41 Download gff for BO13287.3prime
Subject Subject Range Query Range Percent Splice Strand
Det-RA 95..569 13..489 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:10:46 Download gff for BO13287.3prime
Subject Subject Range Query Range Percent Splice Strand
Det-RA 95..569 13..489 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:10:46 Download gff for BO13287.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17149761..17149920 328..489 96 -> Minus
3R 17149998..17150177 148..327 100 -> Minus
3R 17150239..17150373 13..147 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:04:41 Download gff for BO13287.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12975483..12975642 328..489 96 -> Minus
arm_3R 12975720..12975899 148..327 100 -> Minus
arm_3R 12975961..12976095 13..147 97   Minus

BO13287.5prime Sequence

491 bp (490 high quality bases) assembled on 2006-05-08

> BO13287.5prime
GAAGTTATCAGTCGACATGGAATCGCCAGTGGTAAACGAAGTTGCAGCCA
GCTTGGGCGGTGAAAAGCTGGAGGTCTTTCGCAAGCTGAACCTCCTGGAA
CAGCATCGCGTGGAGAGCTACAAGAGTTGGCCCTTTCCGGAGACCGCATC
CTGCAGCATTTCGAAGATGGCCGAGGCGGGATTCTATTGGACGGGCACCA
AGCGGGAAAACGACACTGCCACTTGTTTTGTGTGCGGAAAGACCCTGGAT
GGCTGGGAGCCCGAAGATGATCCGTGGAAGGAGCACGTGAAACATGCACC
CCAATGCGAGTTCGCCAAGCTATCGTGTCCCGAAAGGAATTTAACCGTAT
CACAATTTCTGGAAATTCTTGGAACCGTCGTTAAAGGCAGCATAGAGAAA
ACCTGCAAAGCCTTCAAATCGAGCTTCGTTCGGGAGAATGAGAAGCGTCT
AGATGAGTTTACGCGTAATCAAAAAGCAAGCTTTCTAGACC

BO13287.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12265-PA 462 CG12265-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
Det-RA 651 CG12265-RA 105..563 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17149996..17150181 165..350 930 100 Plus
3R 32079331 3R 17149771..17149920 17..166 750 100 Plus
3R 32079331 3R 17150239..17150367 347..475 645 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:00:53 has no hits.

BO13287.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:54 Download gff for BO13287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12265-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:24 Download gff for BO13287.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12265-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:20 Download gff for BO13287.5prime
Subject Subject Range Query Range Percent Splice Strand
Det-RA 95..569 5..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:33 Download gff for BO13287.5prime
Subject Subject Range Query Range Percent Splice Strand
Det-RA 95..569 5..481 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:33 Download gff for BO13287.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17149761..17149920 5..166 96 -> Plus
3R 17149998..17150177 167..346 100 -> Plus
3R 17150239..17150373 347..481 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:20 Download gff for BO13287.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12975483..12975642 5..166 96 -> Plus
arm_3R 12975720..12975899 167..346 100 -> Plus
arm_3R 12975961..12976095 347..481 97   Plus

BO13287.complete Sequence

493 bp assembled on 2006-10-11

GenBank Submission: FJ632749

> BO13287.complete
GAAGTTATCAGTCGACATGGAATCGCCAGTGGTAAACGAAGTTGCAGCCA
GCTTGGGCGGTGAAAAGCTGGAGGTCTTTCGCAAGCTGAACCTCCTGGAA
CAGCATCGCGTGGAGAGCTACAAGAGTTGGCCCTTTCCGGAGACCGCATC
CTGCAGCATTTCGAAGATGGCCGAGGCGGGATTCTATTGGACGGGCACCA
AGCGGGAAAACGACACTGCCACTTGTTTTGTGTGCGGAAAGACCCTGGAT
GGCTGGGAGCCCGAAGATGATCCGTGGAAGGAGCACGTGAAACATGCACC
CCAATGCGAGTTCGCCAAGCTATCGTGTCCCGAAAGGAATTTAACCGTAT
CACAATTTCTGGAAATTCTTGGAACCGTCGTTAAAGGCAGCATAGAGAAA
ACCTGCAAAGCCTTCAAATCGAGCTTCGTTCGGGAGAATGAGAAGCGTCT
AGATGAGTTTACGCGTAATCAAAAAGCAAGCTTTCTAGACCAT

BO13287.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Det-RA 462 CG12265-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Det-RA 651 CG12265-RA 105..563 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17149996..17150181 165..350 930 100 Plus
3R 32079331 3R 17149771..17149920 17..166 750 100 Plus
3R 32079331 3R 17150239..17150367 347..475 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:50:15 has no hits.

BO13287.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:07 Download gff for BO13287.complete
Subject Subject Range Query Range Percent Splice Strand
CG12265-RA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:47 Download gff for BO13287.complete
Subject Subject Range Query Range Percent Splice Strand
Det-RA 68..542 5..481 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:25 Download gff for BO13287.complete
Subject Subject Range Query Range Percent Splice Strand
Det-RA 105..558 17..470 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:07 Download gff for BO13287.complete
Subject Subject Range Query Range Percent Splice Strand
CG12265-RA 68..542 5..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:21 Download gff for BO13287.complete
Subject Subject Range Query Range Percent Splice Strand
Det-RA 105..558 17..470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:21 Download gff for BO13287.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17149771..17149920 17..166 100 -> Plus
3R 17149998..17150177 167..346 100 -> Plus
3R 17150239..17150362 347..470 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:25 Download gff for BO13287.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12975493..12975642 17..166 100 -> Plus
arm_3R 12975720..12975899 167..346 100 -> Plus
arm_3R 12975961..12976084 347..470 100   Plus

BO13287.pep Sequence

Translation from 16 to 493

> BO13287.pep
MESPVVNEVAASLGGEKLEVFRKLNLLEQHRVESYKSWPFPETASCSISK
MAEAGFYWTGTKRENDTATCFVCGKTLDGWEPEDDPWKEHVKHAPQCEFA
KLSCPERNLTVSQFLEILGTVVKGSIEKTCKAFKSSFVRENEKRLDEFTR
NQKASFLDH

BO13287.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
Det-PA 153 CG12265-PA 1..153 1..153 822 100 Plus
Bruce-PC 4852 CG6303-PC 248..321 28..101 157 37.8 Plus
Bruce-PE 4865 CG6303-PE 248..321 28..101 157 37.8 Plus
Bruce-PD 4875 CG6303-PD 248..321 28..101 157 37.8 Plus
Bruce-PA 4876 CG6303-PA 248..321 28..101 157 37.8 Plus