Clone Sequence Records
BO13287.3prime Sequence
491 bp (490 high quality bases) assembled on 2006-05-08
> BO13287.3prime
ATGGTCTAGAAAGCTTGCTTTTTGATTACGCGTAAACTCATCTAGACGCT
TCTCATTCTCCCGAACGAAGCTCGATTTGAAGGCTTTGCAGGTTTTCTCT
ATGCTGCCTTTAACGACGGTTCCAAGAATTTCCAGAAATTGTGATACGGT
TAAATTCCTTTCGGGACACGATAGCTTGGCGAACTCGCATTGGGGTGCAT
GTTTCACGTGCTCCTTCCACGGATCATCTTCGGGCTCCCAGCCATCCAGG
GTCTTTCCGCACACAAAACAAGTGGCAGTGTCGTTTTCCCGCTTGGTGCC
CGTCCAATAGAATCCCGCCTCGGCCATCTTCGAAATGCTGCAGGATGCGG
TCTCCGGAAAGGGCCAACTCTTGTAGCTCTCCACGCGATGCTGTTCCAGG
AGGTTCAGCTTGCGAAAGACCTCCAGCTTTTCACCGCCCAAGCTGGCTGC
AACTTCGTTTACCACTGGCGATTCCATGTCGACTGATAACT
BO13287.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12265-PA | 462 | CG12265-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Det-RA | 651 | CG12265-RA | 105..563 | 477..19 | 2295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17149996..17150181 | 329..144 | 930 | 100 | Minus |
3R | 32079331 | 3R | 17149771..17149920 | 477..328 | 750 | 100 | Minus |
3R | 32079331 | 3R | 17150239..17150367 | 147..19 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:33:58 has no hits.
BO13287.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:53 Download gff for
BO13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12265-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:22 Download gff for
BO13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12265-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:04:41 Download gff for
BO13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Det-RA | 95..569 | 13..489 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:10:46 Download gff for
BO13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Det-RA | 95..569 | 13..489 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:10:46 Download gff for
BO13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17149761..17149920 | 328..489 | 96 | -> | Minus |
3R | 17149998..17150177 | 148..327 | 100 | -> | Minus |
3R | 17150239..17150373 | 13..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:04:41 Download gff for
BO13287.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12975483..12975642 | 328..489 | 96 | -> | Minus |
arm_3R | 12975720..12975899 | 148..327 | 100 | -> | Minus |
arm_3R | 12975961..12976095 | 13..147 | 97 | | Minus |
BO13287.5prime Sequence
491 bp (490 high quality bases) assembled on 2006-05-08
> BO13287.5prime
GAAGTTATCAGTCGACATGGAATCGCCAGTGGTAAACGAAGTTGCAGCCA
GCTTGGGCGGTGAAAAGCTGGAGGTCTTTCGCAAGCTGAACCTCCTGGAA
CAGCATCGCGTGGAGAGCTACAAGAGTTGGCCCTTTCCGGAGACCGCATC
CTGCAGCATTTCGAAGATGGCCGAGGCGGGATTCTATTGGACGGGCACCA
AGCGGGAAAACGACACTGCCACTTGTTTTGTGTGCGGAAAGACCCTGGAT
GGCTGGGAGCCCGAAGATGATCCGTGGAAGGAGCACGTGAAACATGCACC
CCAATGCGAGTTCGCCAAGCTATCGTGTCCCGAAAGGAATTTAACCGTAT
CACAATTTCTGGAAATTCTTGGAACCGTCGTTAAAGGCAGCATAGAGAAA
ACCTGCAAAGCCTTCAAATCGAGCTTCGTTCGGGAGAATGAGAAGCGTCT
AGATGAGTTTACGCGTAATCAAAAAGCAAGCTTTCTAGACC
BO13287.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12265-PA | 462 | CG12265-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Det-RA | 651 | CG12265-RA | 105..563 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17149996..17150181 | 165..350 | 930 | 100 | Plus |
3R | 32079331 | 3R | 17149771..17149920 | 17..166 | 750 | 100 | Plus |
3R | 32079331 | 3R | 17150239..17150367 | 347..475 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:00:53 has no hits.
BO13287.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:54 Download gff for
BO13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12265-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:24 Download gff for
BO13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12265-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:20 Download gff for
BO13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Det-RA | 95..569 | 5..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:33 Download gff for
BO13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Det-RA | 95..569 | 5..481 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:33 Download gff for
BO13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17149761..17149920 | 5..166 | 96 | -> | Plus |
3R | 17149998..17150177 | 167..346 | 100 | -> | Plus |
3R | 17150239..17150373 | 347..481 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:20 Download gff for
BO13287.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12975483..12975642 | 5..166 | 96 | -> | Plus |
arm_3R | 12975720..12975899 | 167..346 | 100 | -> | Plus |
arm_3R | 12975961..12976095 | 347..481 | 97 | | Plus |
BO13287.complete Sequence
493 bp assembled on 2006-10-11
GenBank Submission: FJ632749
> BO13287.complete
GAAGTTATCAGTCGACATGGAATCGCCAGTGGTAAACGAAGTTGCAGCCA
GCTTGGGCGGTGAAAAGCTGGAGGTCTTTCGCAAGCTGAACCTCCTGGAA
CAGCATCGCGTGGAGAGCTACAAGAGTTGGCCCTTTCCGGAGACCGCATC
CTGCAGCATTTCGAAGATGGCCGAGGCGGGATTCTATTGGACGGGCACCA
AGCGGGAAAACGACACTGCCACTTGTTTTGTGTGCGGAAAGACCCTGGAT
GGCTGGGAGCCCGAAGATGATCCGTGGAAGGAGCACGTGAAACATGCACC
CCAATGCGAGTTCGCCAAGCTATCGTGTCCCGAAAGGAATTTAACCGTAT
CACAATTTCTGGAAATTCTTGGAACCGTCGTTAAAGGCAGCATAGAGAAA
ACCTGCAAAGCCTTCAAATCGAGCTTCGTTCGGGAGAATGAGAAGCGTCT
AGATGAGTTTACGCGTAATCAAAAAGCAAGCTTTCTAGACCAT
BO13287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Det-RA | 462 | CG12265-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Det-RA | 651 | CG12265-RA | 105..563 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17149996..17150181 | 165..350 | 930 | 100 | Plus |
3R | 32079331 | 3R | 17149771..17149920 | 17..166 | 750 | 100 | Plus |
3R | 32079331 | 3R | 17150239..17150367 | 347..475 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:50:15 has no hits.
BO13287.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:07 Download gff for
BO13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12265-RA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:47 Download gff for
BO13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Det-RA | 68..542 | 5..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:25 Download gff for
BO13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Det-RA | 105..558 | 17..470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:07 Download gff for
BO13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12265-RA | 68..542 | 5..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:21 Download gff for
BO13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Det-RA | 105..558 | 17..470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:21 Download gff for
BO13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17149771..17149920 | 17..166 | 100 | -> | Plus |
3R | 17149998..17150177 | 167..346 | 100 | -> | Plus |
3R | 17150239..17150362 | 347..470 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:25 Download gff for
BO13287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12975493..12975642 | 17..166 | 100 | -> | Plus |
arm_3R | 12975720..12975899 | 167..346 | 100 | -> | Plus |
arm_3R | 12975961..12976084 | 347..470 | 100 | | Plus |
BO13287.pep Sequence
Translation from 16 to 493
> BO13287.pep
MESPVVNEVAASLGGEKLEVFRKLNLLEQHRVESYKSWPFPETASCSISK
MAEAGFYWTGTKRENDTATCFVCGKTLDGWEPEDDPWKEHVKHAPQCEFA
KLSCPERNLTVSQFLEILGTVVKGSIEKTCKAFKSSFVRENEKRLDEFTR
NQKASFLDH
BO13287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Det-PA | 153 | CG12265-PA | 1..153 | 1..153 | 822 | 100 | Plus |
Bruce-PC | 4852 | CG6303-PC | 248..321 | 28..101 | 157 | 37.8 | Plus |
Bruce-PE | 4865 | CG6303-PE | 248..321 | 28..101 | 157 | 37.8 | Plus |
Bruce-PD | 4875 | CG6303-PD | 248..321 | 28..101 | 157 | 37.8 | Plus |
Bruce-PA | 4876 | CG6303-PA | 248..321 | 28..101 | 157 | 37.8 | Plus |