Clone Sequence Records
BO13291.3prime Sequence
464 bp (463 high quality bases) assembled on 2006-05-08
> BO13291.3prime
ATGGTCTAGAAAGCTTGCTGGATTTGAAGGATTTGAATCCTTGAGCGATG
ACATCGGTGTACATAGCCCAAGCTCCGGTTTCGTGGAGTCCATCGTAGTC
TCAATGCTCTCCACCATGGAATCTTCGCTCGATGATGAGACGGCTTCCTC
CACATTGCCCACATACTCCTCCACTTCGTTTTCGCCATCGTAAAGCTGAT
CCAAGGCATCCAAATCGATGATCAAACGGCGCAAATGGCGCAGCTCATCA
TGGGCACGCGACACTTTCCGCTCCAGGGCCTTCATTTGGGCCTGCGGAAT
TAGCGGACAGCCCAGAAAATGCAAAATGTGCATCAGAGGGTCCGATGGCA
ACGGATCGATATCCACCATTTGCTTTAAAATCTCCAGAAGTCGAGGGAAA
ATGCCATTTTCCATCAAGTATGCAATCGATTCTTCTTCTCTTTCCGACAT
GTCGACTGATAACT
BO13291.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14545-PA | 435 | CG14545-RA | 1..432 | 450..19 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14545-RA | 813 | CG14545-RA | 99..532 | 452..19 | 2170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25850691..25850967 | 19..295 | 1385 | 100 | Plus |
| 3R | 32079331 | 3R | 25851032..25851193 | 291..452 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:11:26 has no hits.
BO13291.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:57 Download gff for
BO13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-PA | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:28 Download gff for
BO13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-PA | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:45 Download gff for
BO13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 96..532 | 19..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:18 Download gff for
BO13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 96..532 | 19..456 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:18 Download gff for
BO13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25850691..25850963 | 19..291 | 100 | <- | Plus |
| 3R | 25851033..25851196 | 292..456 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:45 Download gff for
BO13291.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21676413..21676685 | 19..291 | 100 | <- | Plus |
| arm_3R | 21676755..21676918 | 292..456 | 98 | | Plus |
BO13291.5prime Sequence
464 bp (463 high quality bases) assembled on 2006-05-08
> BO13291.5prime
GAAGTTATCACTCGACATGTCGGAAAGAGAAGAAGAATCGATTGCATACT
TGATGGAAAATGGCATTTTCCCTCGACTTCTGGAGATTTTAAAGCAAATG
GTGGATATCGATCCGTTGCCATCGGACCCTCTGATGCACATTTTGCATTT
TCTGGGCTGTCCGCTAATTCCGCAGGCCCAAATGAAGGCCCTGGAGCGGA
AAGTGTCGCGTGCCCATGATGAGCTGCGCCATTTGCGCCGTTTGATCATC
GATTTGGATGCCTTGGATCAGCTTTACGATGGCGAAAACGAAGTGGAGGA
GTATGTGGGCAATGTGGAGGAAGCCGTCTCATCATCGAGCGAAGATTCCA
TGGTGGAGAGCATTGAGACTACGATGGACTCCACGAAACCGGAGCTTGGG
CTATGTACACCGATGTCATCGCTCAAGGATTCAAATCCTTCAAATCCAGC
AAGCTTTCTAGACC
BO13291.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14545-PA | 435 | CG14545-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14545-RA | 813 | CG14545-RA | 99..532 | 15..448 | 2170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25850691..25850967 | 448..172 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 25851032..25851193 | 176..15 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:34:18 has no hits.
BO13291.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:59:58 Download gff for
BO13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-PA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:29 Download gff for
BO13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-PA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:23 Download gff for
BO13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 93..532 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:05 Download gff for
BO13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 93..532 | 9..448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:05 Download gff for
BO13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25850691..25850963 | 176..448 | 100 | <- | Minus |
| 3R | 25851033..25851199 | 9..175 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:23 Download gff for
BO13291.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21676413..21676685 | 176..448 | 100 | <- | Minus |
| arm_3R | 21676755..21676921 | 9..175 | 98 | | Minus |
BO13291.complete Sequence
466 bp assembled on 2006-10-11
GenBank Submission: FJ632750
> BO13291.complete
GAAGTTATCAGTCGACATGTCGGAAAGAGAAGAAGAATCGATTGCATACT
TGATGGAAAATGGCATTTTCCCTCGACTTCTGGAGATTTTAAAGCAAATG
GTGGATATCGATCCGTTGCCATCGGACCCTCTGATGCACATTTTGCATTT
TCTGGGCTGTCCGCTAATTCCGCAGGCCCAAATGAAGGCCCTGGAGCGGA
AAGTGTCGCGTGCCCATGATGAGCTGCGCCATTTGCGCCGTTTGATCATC
GATTTGGATGCCTTGGATCAGCTTTACGATGGCGAAAACGAAGTGGAGGA
GTATGTGGGCAATGTGGAGGAAGCCGTCTCATCATCGAGCGAAGATTCCA
TGGTGGAGAGCATTGAGACTACGATGGACTCCACGAAACCGGAGCTTGGG
CTATGTACACCGATGTCATCGCTCAAGGATTCAAATCCTTCAAATCCAGC
AAGCTTTCTAGACCAT
BO13291.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14545-RA | 435 | CG14545-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14545-RA | 813 | CG14545-RA | 99..532 | 15..448 | 2170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25850691..25850967 | 448..172 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 25851032..25851193 | 176..15 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:56:07 has no hits.
BO13291.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:08 Download gff for
BO13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:49 Download gff for
BO13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 96..532 | 11..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:49 Download gff for
BO13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 101..532 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:09 Download gff for
BO13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 96..532 | 11..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:10 Download gff for
BO13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14545-RA | 101..532 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:10 Download gff for
BO13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25850689..25850963 | 176..450 | 99 | <- | Minus |
| 3R | 25851033..25851191 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:49 Download gff for
BO13291.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21676411..21676685 | 176..450 | 99 | <- | Minus |
| arm_3R | 21676755..21676913 | 17..175 | 100 | | Minus |
BO13291.pep Sequence
Translation from 16 to 466
> BO13291.pep
MSEREEESIAYLMENGIFPRLLEILKQMVDIDPLPSDPLMHILHFLGCPL
IPQAQMKALERKVSRAHDELRHLRRLIIDLDALDQLYDGENEVEEYVGNV
EEAVSSSSEDSMVESIETTMDSTKPELGLCTPMSSLKDSNPSNPASFLDH
BO13291.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14545-PA | 144 | CG14545-PA | 1..144 | 1..144 | 733 | 100 | Plus |
