Clone BO13295 Report

Search the DGRC for BO13295

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:132
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG33786-RA
Protein status:BO13295.pep:
Sequenced Size:778

Clone Sequence Records

BO13295.5prime Sequence

726 bp (644 high quality bases) assembled on 2006-05-08

> BO13295.5prime
GAAGTTATCAGTCGACATGCGCCGCCTTCAAACGAGCCTTTATCGACTGC
TCCGTGCTCACCACACATCCAGCAGAATGCAGCACCAAGCGAGCGAGCTG
AGGACTCCAGTGTGCGCGGTGGGCGACGAGGCTGCTCTCCAGTTGGCCCG
CCAGTGCCTGCTTGGTGGCCAAGTGATTGCCCTGCCCACCGATACCGTGT
ATGGCCTGGCCTGCGATGCCAACAACGAGACAGCCATACAGCAGCTCTAC
GAGATTAAGGGTCGCGATGAACACAAGCCCGTGGCCATCTGCGTTCACAA
CATCGATGCGTTGCGACGCTTTGGTCAGGCTGCCCATCTCAGCGACGAGC
TGCTAACTCGTTTGCTCCCGGGCCCCCTGACCATCGTGATCGAGCGGACG
TCCCAGCTGAGCAACCGTTTCCTTAATCCCAGCACCTCCAAAATCGGCAT
ACGCATTCCGGACTTCAACTTCATGCGCGACCTGTGCGCCGTGTGGCAGG
AGAAGCCCCTGGCCCTGACCAGCGCCAATCGCTCCAGTGCGCCCAGCAGT
CTGCAGGTGTCCGAGTTCCGTTCCCTATGGCCCCAATTGGGCGCCGTCTT
CGATGCCGGTCGAATCGGTCTGACCGAGGAGCGACGACTGGCCTCCACGG
TCATTGACCTGGCCACTCCTGGCTACTATGAAATAGTGCGCGCCGGCGTG
GCTCTCAAGCCGACACTCAGCCTCAT

BO13295.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33786-PA 747 CG33786-RA 1..710 17..726 3550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG33785-RA 1245 CG33785-RA 388..1097 17..726 3550 100 Plus
CG33786-RA 1245 CG33786-RA 388..1097 17..726 3550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20642614..20643323 726..17 3550 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:17:42 has no hits.

BO13295.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:03 Download gff for BO13295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33786-PA 1..710 17..726 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:35 Download gff for BO13295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33786-PA 1..710 17..726 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:22 Download gff for BO13295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 382..1097 10..726 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:19 Download gff for BO13295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 382..1097 10..726 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:19 Download gff for BO13295.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20642614..20643329 10..726 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:22 Download gff for BO13295.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16530119..16530834 10..726 99   Minus

BO13295.complete Sequence

778 bp assembled on 2008-01-17

GenBank Submission: FJ632751

> BO13295.complete
GAAGTTATCAGTCGACATGCGCCGCCTTCAAACGAGCCTTTATCGACTGC
TCCGTGCTCACCACACATCCAGCAGAATGCAGCACCAAGCGAGCGAGCTG
AGGACTCCAGTGTGCGCGGTGGGCGACGAGGCTGCTCTCCAGTTGGCCCG
CCAGTGCCTGCTTGGTGGCCAAGTGATTGCCCTGCCCACCGATACCGTGT
ATGGCCTGGCCTGCGATGCCAACAACGAGACAGCCATACAGCAGCTCTAC
GAGATTAAGGGTCGCGATGAACACAAGCCCGTGGCCATCTGCGTTCACAA
CATCGATGCGTTGCGACGCTTTGGTCAGGCTGCCCATCTCAGCGACGAGC
TGCTAACTCGTTTGCTCCCGGGCCCCCTGACCATCGTGATCGAGCGGACG
TCCCAGCTGAGCAACCGTTTCCTTAATCCCAGCACCTCCAAAATCGGCAT
ACGCATTCCGGACTTCAACTTCATGCGCGACCTGTGCGCCGTGTGGCAGG
AGAAGCCCCTGGCCCTGACCAGCGCCAATCGCTCCAGTGCGCCCAGCAGT
CTGCAGGTGTCCGAGTTCCGTTCCCTATGGCCCCAATTGGGCGCCGTCTT
CGATGCCGGTCGAATCGGTCTGACCGAGGAGCGACGACTGGCCTCCACGG
TCATTGACCTGGCCACTCCTGGCTACTATGAAATAGTGCGCGCCGGCGTG
GCTCTCAAGCCGACACTCAGCCTCATGGAGGAGTTCGGCATTCGGGAGCT
AAAAATGATGGCAAGCTTTCTAGACCAT

BO13295.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG33786-RA 747 CG33786-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG33785-RA 1245 CG33785-RA 388..1131 17..760 3720 100 Plus
CG33786-RA 1245 CG33786-RA 388..1131 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20642580..20643323 760..17 3720 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:01:58 has no hits.

BO13295.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:50 Download gff for BO13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 1..747 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:52 Download gff for BO13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 383..1126 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:57 Download gff for BO13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 388..1131 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:50 Download gff for BO13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG33785-RA 377..1126 10..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:42 Download gff for BO13295.complete
Subject Subject Range Query Range Percent Splice Strand
CG33786-RA 388..1131 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:42 Download gff for BO13295.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20642578..20643323 17..762 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:57 Download gff for BO13295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16530083..16530828 17..762 99   Minus

BO13295.pep Sequence

Translation from 16 to 778

> BO13295.pep
MRRLQTSLYRLLRAHHTSSRMQHQASELRTPVCAVGDEAALQLARQCLLG
GQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAICVHNIDALR
RFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIGIRIPDF
NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRSLWPQLGAVFDAGRI
GLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRELKMMAS
FLDH

BO13295.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33786-PA 248 CG33786-PA 1..248 1..248 1259 100 Plus