Clone Sequence Records
BO13313.5prime Sequence
662 bp (661 high quality bases) assembled on 2006-05-08
> BO13313.5prime
GAAGTTATCAGTCGACATGAACACACAAATCGTTGTATTTGCGGTAGCTC
TGATGATGCACTGCATCTCTGCCGTCGAATTCACCTTCGATCTGGCCGAT
AACGCGGTGGATTGCTTCTACGAGGAGATCAAGAAGAACTCGAGCGCCTA
CTTTGAGTTCCAGGTGTCGGCCGGTGGCCAATTGGACGTGGACGTCACCC
TGAAGGATCCGCAGGGCAAGGTCATCTACAGTCTGGAGAAGGCCACCTTC
GATAGTCATCAGTTCGTTGCCGAGACAACGGGCGTGTATACCGCTTGCTT
TGGCAATCAATTCTCGGCCTTCTCGCACAAGATCGTCTACGTGGACTTCC
AAGTGGGCGAGGAGCCGGCTCTGCCCGGTGTGGATGAACATGCCACGGTG
CTCACACAGATGGAGACATCGTCGCAGGCGATTCACAAGGGCCTCAACGA
CATCCTGGACGCCCAGACGCATCATCGACTGAGGGAGGCGCAAGGTCGCA
AGCGGGCCGAAGATCTCAATCAGCGGGTTATGGTCTGGTCATCCCTGGAG
ACGGCCGCAGTCATCGTGATCGGTCTCGTCCAGATTATGGTGCTGAGGAA
CTTCTTTACGGACCGAAAGCCCAGCCAGGCACACTACGGGCGGCTGGCAA
GCTTTCTAGACC
BO13313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1967-PA | 633 | CG1967-RA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p24-1-RB | 1101 | CG1967-RB | 187..817 | 16..646 | 3155 | 100 | Plus |
p24-1-RA | 1541 | CG1967-RA | 187..817 | 16..646 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11851633..11852263 | 646..16 | 3155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:28:48 has no hits.
BO13313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:21 Download gff for
BO13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1967-PA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:58 Download gff for
BO13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1967-PA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:19 Download gff for
BO13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 187..817 | 16..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:04 Download gff for
BO13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 187..817 | 16..646 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:04 Download gff for
BO13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11851633..11852263 | 16..646 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:19 Download gff for
BO13313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11745666..11746296 | 16..646 | 100 | | Minus |
BO13313.3prime Sequence
662 bp (661 high quality bases) assembled on 2006-05-08
> BO13313.3prime
ATGGTCTAGAAAGCTTGCCAGCCGCCCGTAGTGTGCCTGGCTGGGCTTTC
GGTCCGTAAAGAAGTTCCTCAGCACCATAATCTGGACGAGACCGATCACG
ATGACTGCGGCCGTCTCCAGGGATGACCAGACCATAACCCGCTGATTGAG
ATCTTCGGCCCGCTTGCGACCTTGCGCCTCCCTCAGTCGATGATGCGTCT
GGGCGTCCAGGATGTCGTTGAGGCCCTTGTGAATCGCCTGCGACGATGTC
TCCATCTGTGTGAGCACCGTGGCATGTTCATCCACACCGGGCAGAGCCGG
CTCCTCGCCCACTTGGAAGTCCACGTAGACGATCTTGTGCGAGAAGGCCG
AGAATTGATTGCCAAAGCAAGCGGTATACACGCCCGTTGTCTCGGCAACG
AACTGATGACTATCGAAGGTGGCCTTCTCCAGACTGTAGATGACCTTGCC
CTGCGGATCCTTCAGGGTGACGTCCACGTCCAATTGGCCACCGGCCGACA
CCTGGAACTCAAAGTAGGCGCTCGAGTTCTTCTTGATCTCCTCGTAGAAG
CAATCCACCGCGTTATCGGCCAGATCGAAGGTGAATTCGACGGCAGAGAT
GCAGTGCATCATCAGAGCTACCGCAAATACAACGATTTGTGTGTTCATGT
CGACTGATAACT
BO13313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1967-PA | 633 | CG1967-RA | 1..630 | 648..19 | 3150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p24-1-RB | 1101 | CG1967-RB | 187..817 | 649..19 | 3155 | 100 | Minus |
p24-1-RA | 1541 | CG1967-RA | 187..817 | 649..19 | 3155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11851633..11852263 | 19..649 | 3155 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 11:44:29 has no hits.
BO13313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:20 Download gff for
BO13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1967-PA | 1..633 | 18..648 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:57 Download gff for
BO13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1967-PA | 1..633 | 18..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:04 Download gff for
BO13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 187..817 | 19..649 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:11 Download gff for
BO13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 187..817 | 19..649 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:11 Download gff for
BO13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11851633..11852263 | 19..649 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:04 Download gff for
BO13313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11745666..11746296 | 19..649 | 100 | | Plus |
BO13313.complete Sequence
664 bp assembled on 2006-10-11
GenBank Submission: FJ632752
> BO13313.complete
GAAGTTATCAGTCGACATGAACACACAAATCGTTGTATTTGCGGTAGCTC
TGATGATGCACTGCATCTCTGCCGTCGAATTCACCTTCGATCTGGCCGAT
AACGCGGTGGATTGCTTCTACGAGGAGATCAAGAAGAACTCGAGCGCCTA
CTTTGAGTTCCAGGTGTCGGCCGGTGGCCAATTGGACGTGGACGTCACCC
TGAAGGATCCGCAGGGCAAGGTCATCTACAGTCTGGAGAAGGCCACCTTC
GATAGTCATCAGTTCGTTGCCGAGACAACGGGCGTGTATACCGCTTGCTT
TGGCAATCAATTCTCGGCCTTCTCGCACAAGATCGTCTACGTGGACTTCC
AAGTGGGCGAGGAGCCGGCTCTGCCCGGTGTGGATGAACATGCCACGGTG
CTCACACAGATGGAGACATCGTCGCAGGCGATTCACAAGGGCCTCAACGA
CATCCTGGACGCCCAGACGCATCATCGACTGAGGGAGGCGCAAGGTCGCA
AGCGGGCCGAAGATCTCAATCAGCGGGTTATGGTCTGGTCATCCCTGGAG
ACGGCCGCAGTCATCGTGATCGGTCTCGTCCAGATTATGGTGCTGAGGAA
CTTCTTTACGGACCGAAAGCCCAGCCAGGCACACTACGGGCGGCTGGCAA
GCTTTCTAGACCAT
BO13313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p24-1-RB | 633 | CG1967-PB | 1..630 | 17..646 | 3150 | 100 | Plus |
p24-1-RA | 633 | CG1967-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p24-1-RB | 1101 | CG1967-RB | 187..817 | 16..646 | 3155 | 100 | Plus |
p24-1-RA | 1541 | CG1967-RA | 187..817 | 16..646 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11851633..11852263 | 646..16 | 3155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:43:06 has no hits.
BO13313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:09 Download gff for
BO13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 1..633 | 17..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:50 Download gff for
BO13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 172..802 | 16..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:18 Download gff for
BO13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 188..817 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:10 Download gff for
BO13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 172..802 | 16..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:11 Download gff for
BO13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p24-1-RA | 188..817 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:11 Download gff for
BO13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11851631..11852262 | 17..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:18 Download gff for
BO13313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11745664..11746295 | 17..648 | 99 | | Minus |
BO13313.pep Sequence
Translation from 16 to 664
> BO13313.pep
MNTQIVVFAVALMMHCISAVEFTFDLADNAVDCFYEEIKKNSSAYFEFQV
SAGGQLDVDVTLKDPQGKVIYSLEKATFDSHQFVAETTGVYTACFGNQFS
AFSHKIVYVDFQVGEEPALPGVDEHATVLTQMETSSQAIHKGLNDILDAQ
THHRLREAQGRKRAEDLNQRVMVWSSLETAAVIVIGLVQIMVLRNFFTDR
KPSQAHYGRLASFLDH
BO13313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p24-1-PB | 210 | CG1967-PB | 1..210 | 1..210 | 1077 | 100 | Plus |
p24-1-PA | 210 | CG1967-PA | 1..210 | 1..210 | 1077 | 100 | Plus |
CHOp24-PA | 208 | CG3564-PA | 7..202 | 4..197 | 238 | 27 | Plus |
CHOp24-PB | 208 | CG3564-PB | 7..202 | 4..197 | 238 | 27 | Plus |
opm-PA | 242 | CG9053-PA | 33..227 | 21..197 | 194 | 31.6 | Plus |