Clone BO13313 Report

Search the DGRC for BO13313

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptp24-1-RA
Protein status:BO13313.pep: validated full length
Sequenced Size:664

Clone Sequence Records

BO13313.5prime Sequence

662 bp (661 high quality bases) assembled on 2006-05-08

> BO13313.5prime
GAAGTTATCAGTCGACATGAACACACAAATCGTTGTATTTGCGGTAGCTC
TGATGATGCACTGCATCTCTGCCGTCGAATTCACCTTCGATCTGGCCGAT
AACGCGGTGGATTGCTTCTACGAGGAGATCAAGAAGAACTCGAGCGCCTA
CTTTGAGTTCCAGGTGTCGGCCGGTGGCCAATTGGACGTGGACGTCACCC
TGAAGGATCCGCAGGGCAAGGTCATCTACAGTCTGGAGAAGGCCACCTTC
GATAGTCATCAGTTCGTTGCCGAGACAACGGGCGTGTATACCGCTTGCTT
TGGCAATCAATTCTCGGCCTTCTCGCACAAGATCGTCTACGTGGACTTCC
AAGTGGGCGAGGAGCCGGCTCTGCCCGGTGTGGATGAACATGCCACGGTG
CTCACACAGATGGAGACATCGTCGCAGGCGATTCACAAGGGCCTCAACGA
CATCCTGGACGCCCAGACGCATCATCGACTGAGGGAGGCGCAAGGTCGCA
AGCGGGCCGAAGATCTCAATCAGCGGGTTATGGTCTGGTCATCCCTGGAG
ACGGCCGCAGTCATCGTGATCGGTCTCGTCCAGATTATGGTGCTGAGGAA
CTTCTTTACGGACCGAAAGCCCAGCCAGGCACACTACGGGCGGCTGGCAA
GCTTTCTAGACC

BO13313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1967-PA 633 CG1967-RA 1..630 17..646 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
p24-1-RB 1101 CG1967-RB 187..817 16..646 3155 100 Plus
p24-1-RA 1541 CG1967-RA 187..817 16..646 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11851633..11852263 646..16 3155 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:28:48 has no hits.

BO13313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:21 Download gff for BO13313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1967-PA 1..633 17..647 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:58 Download gff for BO13313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1967-PA 1..633 17..647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:19 Download gff for BO13313.5prime
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 187..817 16..646 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:04 Download gff for BO13313.5prime
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 187..817 16..646 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:04 Download gff for BO13313.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11851633..11852263 16..646 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:19 Download gff for BO13313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11745666..11746296 16..646 100   Minus

BO13313.3prime Sequence

662 bp (661 high quality bases) assembled on 2006-05-08

> BO13313.3prime
ATGGTCTAGAAAGCTTGCCAGCCGCCCGTAGTGTGCCTGGCTGGGCTTTC
GGTCCGTAAAGAAGTTCCTCAGCACCATAATCTGGACGAGACCGATCACG
ATGACTGCGGCCGTCTCCAGGGATGACCAGACCATAACCCGCTGATTGAG
ATCTTCGGCCCGCTTGCGACCTTGCGCCTCCCTCAGTCGATGATGCGTCT
GGGCGTCCAGGATGTCGTTGAGGCCCTTGTGAATCGCCTGCGACGATGTC
TCCATCTGTGTGAGCACCGTGGCATGTTCATCCACACCGGGCAGAGCCGG
CTCCTCGCCCACTTGGAAGTCCACGTAGACGATCTTGTGCGAGAAGGCCG
AGAATTGATTGCCAAAGCAAGCGGTATACACGCCCGTTGTCTCGGCAACG
AACTGATGACTATCGAAGGTGGCCTTCTCCAGACTGTAGATGACCTTGCC
CTGCGGATCCTTCAGGGTGACGTCCACGTCCAATTGGCCACCGGCCGACA
CCTGGAACTCAAAGTAGGCGCTCGAGTTCTTCTTGATCTCCTCGTAGAAG
CAATCCACCGCGTTATCGGCCAGATCGAAGGTGAATTCGACGGCAGAGAT
GCAGTGCATCATCAGAGCTACCGCAAATACAACGATTTGTGTGTTCATGT
CGACTGATAACT

BO13313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1967-PA 633 CG1967-RA 1..630 648..19 3150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
p24-1-RB 1101 CG1967-RB 187..817 649..19 3155 100 Minus
p24-1-RA 1541 CG1967-RA 187..817 649..19 3155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11851633..11852263 19..649 3155 100 Plus
Blast to na_te.dros performed on 2015-01-31 11:44:29 has no hits.

BO13313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:20 Download gff for BO13313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1967-PA 1..633 18..648 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:44:57 Download gff for BO13313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1967-PA 1..633 18..648 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:04 Download gff for BO13313.3prime
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 187..817 19..649 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:11 Download gff for BO13313.3prime
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 187..817 19..649 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:11 Download gff for BO13313.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11851633..11852263 19..649 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:04 Download gff for BO13313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11745666..11746296 19..649 100   Plus

BO13313.complete Sequence

664 bp assembled on 2006-10-11

GenBank Submission: FJ632752

> BO13313.complete
GAAGTTATCAGTCGACATGAACACACAAATCGTTGTATTTGCGGTAGCTC
TGATGATGCACTGCATCTCTGCCGTCGAATTCACCTTCGATCTGGCCGAT
AACGCGGTGGATTGCTTCTACGAGGAGATCAAGAAGAACTCGAGCGCCTA
CTTTGAGTTCCAGGTGTCGGCCGGTGGCCAATTGGACGTGGACGTCACCC
TGAAGGATCCGCAGGGCAAGGTCATCTACAGTCTGGAGAAGGCCACCTTC
GATAGTCATCAGTTCGTTGCCGAGACAACGGGCGTGTATACCGCTTGCTT
TGGCAATCAATTCTCGGCCTTCTCGCACAAGATCGTCTACGTGGACTTCC
AAGTGGGCGAGGAGCCGGCTCTGCCCGGTGTGGATGAACATGCCACGGTG
CTCACACAGATGGAGACATCGTCGCAGGCGATTCACAAGGGCCTCAACGA
CATCCTGGACGCCCAGACGCATCATCGACTGAGGGAGGCGCAAGGTCGCA
AGCGGGCCGAAGATCTCAATCAGCGGGTTATGGTCTGGTCATCCCTGGAG
ACGGCCGCAGTCATCGTGATCGGTCTCGTCCAGATTATGGTGCTGAGGAA
CTTCTTTACGGACCGAAAGCCCAGCCAGGCACACTACGGGCGGCTGGCAA
GCTTTCTAGACCAT

BO13313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
p24-1-RB 633 CG1967-PB 1..630 17..646 3150 100 Plus
p24-1-RA 633 CG1967-PA 1..630 17..646 3150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
p24-1-RB 1101 CG1967-RB 187..817 16..646 3155 100 Plus
p24-1-RA 1541 CG1967-RA 187..817 16..646 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11851633..11852263 646..16 3155 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:43:06 has no hits.

BO13313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:09 Download gff for BO13313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 1..633 17..647 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:50 Download gff for BO13313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 172..802 16..646 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:18 Download gff for BO13313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 188..817 17..648 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:10 Download gff for BO13313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 172..802 16..646 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:11 Download gff for BO13313.complete
Subject Subject Range Query Range Percent Splice Strand
p24-1-RA 188..817 17..648 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:11 Download gff for BO13313.complete
Subject Subject Range Query Range Percent Splice Strand
X 11851631..11852262 17..648 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:18 Download gff for BO13313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11745664..11746295 17..648 99   Minus

BO13313.pep Sequence

Translation from 16 to 664

> BO13313.pep
MNTQIVVFAVALMMHCISAVEFTFDLADNAVDCFYEEIKKNSSAYFEFQV
SAGGQLDVDVTLKDPQGKVIYSLEKATFDSHQFVAETTGVYTACFGNQFS
AFSHKIVYVDFQVGEEPALPGVDEHATVLTQMETSSQAIHKGLNDILDAQ
THHRLREAQGRKRAEDLNQRVMVWSSLETAAVIVIGLVQIMVLRNFFTDR
KPSQAHYGRLASFLDH

BO13313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
p24-1-PB 210 CG1967-PB 1..210 1..210 1077 100 Plus
p24-1-PA 210 CG1967-PA 1..210 1..210 1077 100 Plus
CHOp24-PA 208 CG3564-PA 7..202 4..197 238 27 Plus
CHOp24-PB 208 CG3564-PB 7..202 4..197 238 27 Plus
opm-PA 242 CG9053-PA 33..227 21..197 194 31.6 Plus