Clone Sequence Records
BO13314.complete Sequence
1588 bp assembled on 2009-09-17
GenBank Submission: FJ632753
> BO13314.complete
GAAGTTATCAGTCGACATGGCGTTGACAATTACAAAATTTCGAACTTCGA
GGGGGATGGTGGTGGCCGTACAGCCCACAGTGGTGTTGAGCCCCAAAATA
CCAGATTCCCAGGATAACGAAAAGAAACCGTTTTCAAAATCGGAGCCGGG
AAATGCAACTGTGAGAGTTAATGCAGGTGGTATAGTTCTTAACAAAATAC
CAGCGATTATAAGGCCAAGTATGAAGAGAGCAGCAACAACAAAGATGACT
GGAGCCACGGCTGCGGGAGCAACAACAACAACATCGTCAACAGGTGCAGT
GGGATATCCCGTTCTCAAAACACCCAAGTATGTGGTTCAGACTAGTCCGA
GTGGATCCTCTGGCCATCAGCTCCAGATGCTGGCGAGGAAGGACACTCAA
AGTCTGGGAGTGGCCATCAATTCACTGCCGCCCAACACAATCATCAAAGC
AACCACAAGACCTTCACAAACAGCGCCTTTGACACCAAACTCAGCGGCTG
TCACGCCAAGCACGCCGAGCAGTAGCAGGAATTCCACTCAGTCCACACCA
ACTGTGGTACCTGATGCGAGAGTTTCCTCCGCCGTGCGCCAAGCTGTGTT
CATCAAGAGGGAGCTACCCCAGCCGCAGAGGAGCATGCGAAATATGACAC
TTGGTTTGGTGGAACAGGCGCCACTGCTTCATTTGGGTGTTGCGCCACAG
CACCTGTCACTGCTGAAACGCCATATCTGCCGCAATGCTAATGTCACCCA
CTTGGACTGTTGCTTGACTCTAAGGAAACTCAAACAAAACGAGCACTTCG
CCCTGTTGGCCGAGCACTTTGAGCTGAGCGAATCAGATGTCGAGGACACA
TTTAAGCGCACCCTTATCAAGCTGGCCCGTTACCTCCGTCCACTGATTCG
TTGGCCAGATGCACGGCATCACAACGAGCGCTTCAAACATACCCCACTGA
ACTACCGAGCCAACCTGTTGCATGTACGCTCGTTGATCGAGTGTGTGGAA
ACGGACGTGCCGATAGATCTGGGATTGGGCAGCGGCAGCTATAAGTTCAT
ATTGTGCATCAATACAAATGGCATCATCAGCTATGTGTCTAGCGCCTTTC
CTGGTAGTTGCGATGATCTTCAATTGTTTGAGGCCAGCAGATTTCGGGAT
GTCATTCCCAATTACCTAACACTATGCGCGGAACCAGGCAAAGCAGTACG
CCGTGCTCGCAGGTCGGGCTTCGGAGATCCTCACGACTCAGCGGATGAGG
ATGAGGCGGCGGCGGAACCAAAGCGATCACTTACCAAATTCGAGGCACAG
CGTTTGAGTGGCCAGCTAGCAAGCCAGCAATCCCTATCCGTTGTAGACGG
AGCACTGACTTCCAAGCGGGCTCCAGCGATTCAACTACCCACATTCAACG
CACAAGAACCCGCCTGTAGAGCCCAAATGAGAGATATGATAGATTATTTA
AGGGAATTCCGCATGCTGGATAATTCGGCTATTAAGCAAAAGTCATTGCT
GGGTTATCTTGATGAAATGATCGTGGTGGCTGCGGGTCTATGCAACCTTA
AGCGCCAAGAGTTGGAATCTGCAAGCTTTCTAGACCAT
BO13314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6568-RA | 1557 | CG6568-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
CG6568-RB | 1353 | CG6568-PB | 1..1350 | 221..1570 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6568-RA | 1813 | CG6568-RA | 80..1633 | 17..1570 | 7770 | 100 | Plus |
CG6568-RB | 1721 | CG6568-RB | 94..1541 | 123..1570 | 7240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17406036..17406801 | 1071..306 | 3830 | 100 | Minus |
2R | 25286936 | 2R | 17405484..17405984 | 1570..1070 | 2505 | 100 | Minus |
2R | 25286936 | 2R | 17406875..17407057 | 305..123 | 915 | 100 | Minus |
2R | 25286936 | 2R | 17407241..17407348 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS | 5142 | BS BS 5142bp | 2000..2073 | 216..289 | 145 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2930..3006 | 227..300 | 144 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2446 | 229..298 | 143 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1479..1587 | 191..297 | 142 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6817 | 229..299 | 137 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6790 | 229..293 | 134 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6835 | 229..299 | 130 | 64.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1141 | 229..299 | 130 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2484 | 227..291 | 127 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2510 | 194..299 | 125 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2395 | 229..292 | 122 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2419 | 229..298 | 116 | 62.9 | Plus |
BO13314.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:51 Download gff for
BO13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 1..1557 | 17..1574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:01 Download gff for
BO13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 78..1631 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:35 Download gff for
BO13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 80..1633 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:52 Download gff for
BO13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 78..1631 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:29 Download gff for
BO13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 80..1633 | 17..1572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:29 Download gff for
BO13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17407241..17407348 | 17..124 | 100 | | Minus |
2R | 17406037..17406801 | 306..1070 | 100 | <- | Minus |
2R | 17405482..17405983 | 1071..1572 | 99 | <- | Minus |
2R | 17406875..17407055 | 125..305 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:35 Download gff for
BO13314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13292987..13293488 | 1071..1572 | 99 | <- | Minus |
arm_2R | 13293542..13294306 | 306..1070 | 100 | <- | Minus |
arm_2R | 13294380..13294560 | 125..305 | 100 | <- | Minus |
arm_2R | 13294746..13294853 | 17..124 | 100 | | Minus |
BO13314.3prime Sequence
785 bp (750 high quality bases) assembled on 2006-05-08
> BO13314.3prime
ATGGTCTAGAAAGCTTGCAGATTCCAACTCTTGGCGCTTAAGGTTGCATA
GACCCGCAGCCACCACGATCATTTCATCAAGATAACCCAGCAATGACTTT
TGCTTAATAGCCGAATTATCCAGCATGCGGAATTCCCTTAAATAATCTAT
CATATCTCTCATTTGGGCTCTACAGGCGGGTTCTTGTGCGTTGAATGTGG
GTAGTTGAATCGCTGGAGCCCGCTTGGAAGTCAGTGCTCCGTCTACAACG
GATAGGGATTGCTGGCTTGCTAGCTGGCCACTCAAACGCTGTGCCTCGAA
TTTGGTAAGTGATCGCTTTGGTTCCGCCGCCGCCTCATCCTCATCCGCTG
AGTCGTGAGGATCTCCGAAGCCCGACCTGCGAGCACGGCGTACTGCTTTG
CCTGGTTCCGCGCATAGTGTTAGGTAATTGGGAATGACATCCCGAAATCT
GCTGGCCTCAAACAATTGAAGATCATCGCAACTACCAGGAAAGGCGCTAG
ACACATAGCTGATGATGCCATTTGTATTGATGCACAATATGAACTTATAG
CTGCCGCTGCCCAATCCCAGATCTATCGGCACGTCCGTTTCCACACACTC
GATCAACGAGCGTACATGCAACAGGTTGGCTCGGTAGTTCAGTGGGGTAT
GTTTGAAGCGCTCGTTGTGATGCCGTGCATCTGGCCAACGAATCAGTGGA
CGGAGGTAACGGGCCAGCTTGATAAGGGTGCGCTTAAATGTGTCCTCGAC
ATCTGATTCGCTCAGCTCAAAGTGCTCGGCCAACA
BO13314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6568-PA | 1557 | CG6568-RA | 788..1554 | 785..19 | 3835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6568-RB | 1721 | CG6568-RB | 775..1541 | 785..19 | 3835 | 100 | Minus |
CG6568-RA | 1813 | CG6568-RA | 867..1633 | 785..19 | 3835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17405484..17405984 | 19..519 | 2505 | 100 | Plus |
2R | 25286936 | 2R | 17406036..17406303 | 518..785 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:10:30 has no hits.
BO13314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:22 Download gff for
BO13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-PA | 789..1557 | 15..784 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:00 Download gff for
BO13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-PA | 789..1557 | 15..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:07 Download gff for
BO13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 868..1636 | 15..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:49 Download gff for
BO13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 868..1636 | 15..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:49 Download gff for
BO13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17405480..17405983 | 15..518 | 99 | <- | Plus |
2R | 17406037..17406302 | 519..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:07 Download gff for
BO13314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13292985..13293488 | 15..518 | 99 | <- | Plus |
arm_2R | 13293542..13293807 | 519..784 | 100 | | Plus |
BO13314.5prime Sequence
827 bp (697 high quality bases) assembled on 2006-05-08
> BO13314.5prime
GAAGTTATCAGTCGACATGGCGTTGACAATTACAAAATTTCGAACTTCGA
GGGGGATGGTGGTGGCCGTACAGCCCACAGTGGTGTTGAGCCCCAAAATA
CCAGATTCCCAGGATAACGAAAAGAAACCGTTTTCAAAATCGGAGCCGGG
AAATGCAACTGTGAGAGTTAATGCAGGTGGTATAGTTCTTAACAAAATAC
CAGCGATTATAAGGCCAAGTATGAAGAGAGCAGCAACAACAAAGATGACT
GGAGCCACGGCTGCGGGAGCAACAACAACAACATCGTCAACAGGTGCAGT
GGGATATCCCGTTCTCAAAACACCCAAGTATGTGGTTCAGACTAGTCCGA
GTGGATCCTCTGGCCATCAGCTCCAGATGCTGGCGAGGAAGGACACTCAA
AGTCTGGGAGTGGCCATCAATTCACTGCCGCCCAACACAATCATCAAAGC
AACCACAAGACCTTCACAAACAGCGCCTTTGACACCAAACTCAGCGGCTG
TCACGCCAAGCACGCCGAGCAGTAGCAGGAATTCCACTCAGTCCACACCA
ACTGTGGTACCTGATGCGAGAGTTTCCTCCGCCGTGCGCCAAGCTGTGTT
CATCAAGAGGGAGCTACCCCAGCCGCAGAGGAGCATGCGAAATATGACAC
TTGGTTTGGTGGAACAGGCGCCACTGCTTCATTTGGGTGTTGCGCCACAG
CACCTGTCACTGCTGAAACGCCATATCTGCCGCAATGCTAATGTCACCCA
CTTGGACTGTTGCTTGACTCTAAGGAAACTCAAACAAAACGAGCACTTCG
CCCTGTTGCCCGAGCACTTTGAGCTGA
BO13314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6568-PA | 1557 | CG6568-RA | 1..811 | 17..827 | 4030 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6568-RA | 1813 | CG6568-RA | 80..890 | 17..827 | 4040 | 99.9 | Plus |
CG6568-RB | 1721 | CG6568-RB | 94..798 | 123..827 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17406280..17406801 | 827..306 | 2595 | 99.8 | Minus |
2R | 25286936 | 2R | 17406875..17407057 | 305..123 | 915 | 100 | Minus |
2R | 25286936 | 2R | 17407241..17407348 | 124..17 | 540 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS | 5142 | BS BS 5142bp | 2000..2073 | 216..289 | 145 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2930..3006 | 227..300 | 144 | 67.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2446 | 229..298 | 143 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1479..1587 | 191..297 | 142 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6817 | 229..299 | 137 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6790 | 229..293 | 134 | 70.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6032..6094 | 233..298 | 134 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6835 | 229..299 | 130 | 64.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1071..1141 | 229..299 | 130 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2484 | 227..291 | 127 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2510 | 194..299 | 125 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2395 | 229..292 | 122 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2419 | 229..298 | 116 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6898 | 218..293 | 112 | 62.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 4260..4290 | 422..452 | 110 | 83.9 | Plus |
BO13314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:23 Download gff for
BO13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:01 Download gff for
BO13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:54 Download gff for
BO13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 80..889 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:27 Download gff for
BO13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6568-RA | 80..889 | 17..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:27 Download gff for
BO13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17406281..17406801 | 306..826 | 99 | <- | Minus |
2R | 17406875..17407055 | 125..305 | 100 | <- | Minus |
2R | 17407241..17407348 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:54 Download gff for
BO13314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13293786..13294306 | 306..826 | 99 | <- | Minus |
arm_2R | 13294380..13294560 | 125..305 | 100 | <- | Minus |
arm_2R | 13294746..13294853 | 17..124 | 100 | | Minus |
BO13314.pep Sequence
Translation from 16 to 1588
> BO13314.pep
MALTITKFRTSRGMVVAVQPTVVLSPKIPDSQDNEKKPFSKSEPGNATVR
VNAGGIVLNKIPAIIRPSMKRAATTKMTGATAAGATTTTSSTGAVGYPVL
KTPKYVVQTSPSGSSGHQLQMLARKDTQSLGVAINSLPPNTIIKATTRPS
QTAPLTPNSAAVTPSTPSSSRNSTQSTPTVVPDARVSSAVRQAVFIKREL
PQPQRSMRNMTLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCL
TLRKLKQNEHFALLAEHFELSESDVEDTFKRTLIKLARYLRPLIRWPDAR
HHNERFKHTPLNYRANLLHVRSLIECVETDVPIDLGLGSGSYKFILCINT
NGIISYVSSAFPGSCDDLQLFEASRFRDVIPNYLTLCAEPGKAVRRARRS
GFGDPHDSADEDEAAAEPKRSLTKFEAQRLSGQLASQQSLSVVDGALTSK
RAPAIQLPTFNAQEPACRAQMRDMIDYLREFRMLDNSAIKQKSLLGYLDE
MIVVAAGLCNLKRQELESASFLDH
BO13314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6568-PA | 518 | CG6568-PA | 1..518 | 1..518 | 2632 | 100 | Plus |
CG6568-PB | 450 | CG6568-PB | 1..450 | 69..518 | 2294 | 100 | Plus |