Clone BO13315 Report

Search the DGRC for BO13315

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG5500-RA
Protein status:BO13315.pep: validated full length
Sequenced Size:535

Clone Sequence Records

BO13315.5prime Sequence

533 bp (532 high quality bases) assembled on 2006-05-08

> BO13315.5prime
GAAGTTATCAGTCGACATGTTGGCTCCCCTGGGCTTCAGCTGTCCGCGAT
GCTTGCTCCTGCGACGTGGCGCCGAGCGTTGGGCCTCACTGGCCCGCCAA
TTGTCGGGCAGCAGCTCCCAGGATGATGCCAGCAGCAAGGATGCGGCCGC
CCAGGAGGCAGCAAGTGGCTGTCCGCCCAATAGCACAACGACGGGCACTG
ACACTCCCAAAGCCAAAGATAAAACCACCAAGGGAAGGAAGCGGCTCAGA
AACATAGAGATACCTCCCGAGCCCACCACCTGCTGCATGTCGGGCTGCGC
CAACTGCGTTTGGCTGGACTACGCACAGACGCTGGCCAAGCTGCTGGGCG
ACAACGATGAGGAGGCGCGAGAGATTGTGCTGAGCAAGATCACCGACCCG
AACCTGAAGATGTTCCTCAGCCTGGAGCTGCGCCAGATGGCTAAGCAGCG
GGAGGAGAAGGCGGCGGCGGAGAAAGCAGCGAAGCAGGGAAAGCCAAAGA
AATCCTCGCCCCCGCCGGCAAGCTTTCTAGACC

BO13315.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5500-PA 504 CG5500-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5500-RA 859 CG5500-RA 242..742 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26880083..26880342 258..517 1300 100 Plus
3R 32079331 3R 26879594..26879836 17..259 1215 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:40:36 has no hits.

BO13315.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:24 Download gff for BO13315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5500-PA 1..504 17..518 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:02 Download gff for BO13315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5500-PA 1..504 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:53 Download gff for BO13315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 231..742 7..517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:25 Download gff for BO13315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 231..742 7..517 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:25 Download gff for BO13315.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26879583..26879836 7..259 98 -> Plus
3R 26880085..26880342 260..517 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:53 Download gff for BO13315.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22705305..22705558 7..259 98 -> Plus
arm_3R 22705807..22706064 260..517 100   Plus

BO13315.complete Sequence

535 bp assembled on 2006-10-11

GenBank Submission: FJ632754

> BO13315.complete
GAAGTTATCAGTCGACATGTTGGCTCCCCTGGGCTTCAGCTGTCCGCGAT
GCTTGCTCCTGCGACGTGGCGCCGAGCGTTGGGCCTCACTGGCCCGCCAA
TTGTCGGGCAGCAGCTCCCAGGATGATGCCAGCAGCAAGGATGCGGCCGC
CCAGGAGGCAGCAAGTGGCTGTCCGCCCAATAGCACAACGACGGGCACTG
ACACTCCCAAAGCCAAAGATAAAACCACCAAGGGAAGGAAGCGGCTCAGA
AACATAGAGATACCTCCCGAGCCCACCACCTGCTGCATGTCGGGCTGCGC
CAACTGCGTTTGGCTGGACTACGCACAGACGCTGGCCAAGCTGCTGGGCG
ACAACGATGAGGAGGCGCGAGAGATTGTGCTGAGCAAGATCACCGACCCG
AACCTGAAGATGTTCCTCAGCCTGGAGCTGCGCCAGATGGCTAAGCAGCG
GGAGGAGAAGGCGGCGGCGGAGAAAGCAGCGAAGCAGGGAAAGCCAAAGA
AATCCTCGCCCCCGCCGGCAAGCTTTCTAGACCAT

BO13315.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5500-RA 504 CG5500-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5500-RA 859 CG5500-RA 242..742 17..517 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26880083..26880342 258..517 1300 100 Plus
3R 32079331 3R 26879594..26879836 17..259 1215 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:10:59 has no hits.

BO13315.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:11 Download gff for BO13315.complete
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 1..504 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:52 Download gff for BO13315.complete
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 228..739 7..517 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:51 Download gff for BO13315.complete
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 247..742 22..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:11 Download gff for BO13315.complete
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 228..739 7..517 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:16 Download gff for BO13315.complete
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 247..742 22..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:16 Download gff for BO13315.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26879599..26879836 22..259 100 -> Plus
3R 26880085..26880342 260..519 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:51 Download gff for BO13315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22705321..22705558 22..259 100 -> Plus
arm_3R 22705807..22706064 260..519 99   Plus

BO13315.pep Sequence

Translation from 16 to 535

> BO13315.pep
MLAPLGFSCPRCLLLRRGAERWASLARQLSGSSSQDDASSKDAAAQEAAS
GCPPNSTTTGTDTPKAKDKTTKGRKRLRNIEIPPEPTTCCMSGCANCVWL
DYAQTLAKLLGDNDEEAREIVLSKITDPNLKMFLSLELRQMAKQREEKAA
AEKAAKQGKPKKSSPPPASFLDH

BO13315.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5500-PA 167 CG5500-PA 1..167 1..167 869 100 Plus