Clone Sequence Records
BO13315.5prime Sequence
533 bp (532 high quality bases) assembled on 2006-05-08
> BO13315.5prime
GAAGTTATCAGTCGACATGTTGGCTCCCCTGGGCTTCAGCTGTCCGCGAT
GCTTGCTCCTGCGACGTGGCGCCGAGCGTTGGGCCTCACTGGCCCGCCAA
TTGTCGGGCAGCAGCTCCCAGGATGATGCCAGCAGCAAGGATGCGGCCGC
CCAGGAGGCAGCAAGTGGCTGTCCGCCCAATAGCACAACGACGGGCACTG
ACACTCCCAAAGCCAAAGATAAAACCACCAAGGGAAGGAAGCGGCTCAGA
AACATAGAGATACCTCCCGAGCCCACCACCTGCTGCATGTCGGGCTGCGC
CAACTGCGTTTGGCTGGACTACGCACAGACGCTGGCCAAGCTGCTGGGCG
ACAACGATGAGGAGGCGCGAGAGATTGTGCTGAGCAAGATCACCGACCCG
AACCTGAAGATGTTCCTCAGCCTGGAGCTGCGCCAGATGGCTAAGCAGCG
GGAGGAGAAGGCGGCGGCGGAGAAAGCAGCGAAGCAGGGAAAGCCAAAGA
AATCCTCGCCCCCGCCGGCAAGCTTTCTAGACC
BO13315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5500-PA | 504 | CG5500-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5500-RA | 859 | CG5500-RA | 242..742 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26880083..26880342 | 258..517 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 26879594..26879836 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:40:36 has no hits.
BO13315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:24 Download gff for
BO13315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-PA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:02 Download gff for
BO13315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-PA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:53 Download gff for
BO13315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-RA | 231..742 | 7..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:25 Download gff for
BO13315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-RA | 231..742 | 7..517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:25 Download gff for
BO13315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26879583..26879836 | 7..259 | 98 | -> | Plus |
3R | 26880085..26880342 | 260..517 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:53 Download gff for
BO13315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22705305..22705558 | 7..259 | 98 | -> | Plus |
arm_3R | 22705807..22706064 | 260..517 | 100 | | Plus |
BO13315.complete Sequence
535 bp assembled on 2006-10-11
GenBank Submission: FJ632754
> BO13315.complete
GAAGTTATCAGTCGACATGTTGGCTCCCCTGGGCTTCAGCTGTCCGCGAT
GCTTGCTCCTGCGACGTGGCGCCGAGCGTTGGGCCTCACTGGCCCGCCAA
TTGTCGGGCAGCAGCTCCCAGGATGATGCCAGCAGCAAGGATGCGGCCGC
CCAGGAGGCAGCAAGTGGCTGTCCGCCCAATAGCACAACGACGGGCACTG
ACACTCCCAAAGCCAAAGATAAAACCACCAAGGGAAGGAAGCGGCTCAGA
AACATAGAGATACCTCCCGAGCCCACCACCTGCTGCATGTCGGGCTGCGC
CAACTGCGTTTGGCTGGACTACGCACAGACGCTGGCCAAGCTGCTGGGCG
ACAACGATGAGGAGGCGCGAGAGATTGTGCTGAGCAAGATCACCGACCCG
AACCTGAAGATGTTCCTCAGCCTGGAGCTGCGCCAGATGGCTAAGCAGCG
GGAGGAGAAGGCGGCGGCGGAGAAAGCAGCGAAGCAGGGAAAGCCAAAGA
AATCCTCGCCCCCGCCGGCAAGCTTTCTAGACCAT
BO13315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5500-RA | 504 | CG5500-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5500-RA | 859 | CG5500-RA | 242..742 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26880083..26880342 | 258..517 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 26879594..26879836 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:10:59 has no hits.
BO13315.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:11 Download gff for
BO13315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-RA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:52 Download gff for
BO13315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-RA | 228..739 | 7..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:51 Download gff for
BO13315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-RA | 247..742 | 22..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:11 Download gff for
BO13315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-RA | 228..739 | 7..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:16 Download gff for
BO13315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5500-RA | 247..742 | 22..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:16 Download gff for
BO13315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26879599..26879836 | 22..259 | 100 | -> | Plus |
3R | 26880085..26880342 | 260..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:51 Download gff for
BO13315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22705321..22705558 | 22..259 | 100 | -> | Plus |
arm_3R | 22705807..22706064 | 260..519 | 99 | | Plus |
BO13315.pep Sequence
Translation from 16 to 535
> BO13315.pep
MLAPLGFSCPRCLLLRRGAERWASLARQLSGSSSQDDASSKDAAAQEAAS
GCPPNSTTTGTDTPKAKDKTTKGRKRLRNIEIPPEPTTCCMSGCANCVWL
DYAQTLAKLLGDNDEEAREIVLSKITDPNLKMFLSLELRQMAKQREEKAA
AEKAAKQGKPKKSSPPPASFLDH
BO13315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5500-PA | 167 | CG5500-PA | 1..167 | 1..167 | 869 | 100 | Plus |