Clone Sequence Records
BO13319.3prime Sequence
482 bp (481 high quality bases) assembled on 2006-05-08
> BO13319.3prime
ATGGTCTAGAAAGCTTGCAATGGAAAACCAGCCCGGCGTGCCGGGTCGCT
TCTTGTTCCTGTCCAGAAATCTGCGGAAACCGGCTTTCGATTCATCCAGC
GACTTTTCCTCCTTGGCCTGCTTCTCAGCCTTTTCGGAAAAGAAGTCGGG
GAAGACAAAGGACTCCTCCCTGGGCAATGTTACATAAGCCAGCTTCACGT
CGTCTTTTTTGGTGATGTAGCCGTAGGTCTGATCCTTCTTGGTCTCGCCC
ATGGCAATCCGAGTACGCACATCCACCACCGGCAGCTTGTAGATCTTCTC
CAGATAGTTACGCACATCGTACTTGGTCATTTCCATGGACACCGAAAAAG
TGACCACATTGGGTGGCTGTTCCTCCGTGGGTCGGATTAGCTTCATCCAG
AAGTTGGGAAGGAAAACGCGAAGCTGCGGATTGCCGCGCTGATAGATGGG
ATACCACCTCGTGGACATGTCGACTGATAACT
BO13319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1320-PA | 453 | mRpL23-RA | 1..450 | 468..19 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL23-RD | 591 | CG1320-RD | 73..523 | 469..19 | 2255 | 100 | Minus |
mRpL23-RC | 560 | CG1320-RC | 42..492 | 469..19 | 2255 | 100 | Minus |
mRpL23-RB | 622 | CG1320-RB | 104..554 | 469..19 | 2255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2373129..2373423 | 175..469 | 1475 | 100 | Plus |
3L | 28110227 | 3L | 2372912..2373068 | 19..175 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:34:40 has no hits.
BO13319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:28 Download gff for
BO13319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1320-PA | 1..453 | 18..468 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:08 Download gff for
BO13319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1320-PA | 1..453 | 18..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:38 Download gff for
BO13319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 104..560 | 10..469 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:27 Download gff for
BO13319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 104..560 | 10..469 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:27 Download gff for
BO13319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2372905..2373067 | 10..174 | 97 | <- | Plus |
3L | 2373129..2373423 | 175..469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:38 Download gff for
BO13319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2372905..2373067 | 10..174 | 97 | <- | Plus |
arm_3L | 2373129..2373423 | 175..469 | 100 | | Plus |
BO13319.5prime Sequence
482 bp (481 high quality bases) assembled on 2006-05-08
> BO13319.5prime
GAAGTTATCAGTCGACATGTCCACGAGGTGGTATCCCATCTATCAGCGCG
GCAATCCGCAGCTTCGCGTTTTCCTTCCCAACTTCTGGATGAAGCTAATC
CGACCCACGGAGGAACAGCCACCCAATGTGGTCACTTTTTCGGTGTCCAT
GGAAATGACCAAGTACGATGTGCGTAACTATCTGGAGAAGATCTACAAGC
TGCCGGTGGTGGATGTGCGTACTCGGATTGCCATGGGCGAGACCAAGAAG
GATCAGACCTACGGCTACATCACCAAAAAAGACGACGTGAAGCTGGCTTA
TGTAACATTGCCCAGGGAGGAGTCCTTTGTCTTCCCCGACTTCTTTTCCG
AAAAGGCTGAGAAGCAGGCCAAGGAGGAAAAGTCGCTGGATGAATCGAAA
GCCGGTTTCCGCAGATTTCTGGACAGGAACAAGAAGCGACCCGGCACGCC
GGGCTGGTTTTCCATTGCAAGCTTTCTAGACC
BO13319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1320-PA | 453 | mRpL23-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL23-RD | 591 | CG1320-RD | 73..523 | 16..466 | 2255 | 100 | Plus |
mRpL23-RC | 560 | CG1320-RC | 42..492 | 16..466 | 2255 | 100 | Plus |
mRpL23-RB | 622 | CG1320-RB | 104..554 | 16..466 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2373129..2373423 | 310..16 | 1475 | 100 | Minus |
3L | 28110227 | 3L | 2372912..2373068 | 466..310 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:44:13 has no hits.
BO13319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:29 Download gff for
BO13319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1320-PA | 1..453 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:09 Download gff for
BO13319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1320-PA | 1..453 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:22 Download gff for
BO13319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 104..560 | 16..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:55 Download gff for
BO13319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 104..560 | 16..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:55 Download gff for
BO13319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2372905..2373067 | 311..475 | 97 | <- | Minus |
3L | 2373129..2373423 | 16..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:22 Download gff for
BO13319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2372905..2373067 | 311..475 | 97 | <- | Minus |
arm_3L | 2373129..2373423 | 16..310 | 100 | | Minus |
BO13319.complete Sequence
484 bp assembled on 2006-10-11
GenBank Submission: FJ632755
> BO13319.complete
GAAGTTATCAGTCGACATGTCCACGAGGTGGTATCCCATCTATCAGCGCG
GCAATCCGCAGCTTCGCGTTTTCCTTCCCAACTTCTGGATGAAGCTAATC
CGACCCACGGAGGAACAGCCACCCAATGTGGTCACTTTTTCGGTGTCCAT
GGAAATGACCAAGTACGATGTGCGTAACTATCTGGAGAAGATCTACAAGC
TGCCGGTGGTGGATGTGCGTACTCGGATTGCCATGGGCGAGACCAAGAAG
GATCAGACCTACGGCTACATCACCAAAAAAGACGACGTGAAGCTGGCTTA
TGTAACATTGCCCAGGGAGGAGTCCTTTGTCTTCCCCGACTTCTTTTCCG
AAAAGGCTGAGAAGCAGGCCAAGGAGGAAAAGTCGCTGGATGAATCGAAA
GCCGGTTTCCGCAGATTTCTGGACAGGAACAAGAAGCGACCCGGCACGCC
GGGCTGGTTTTCCATTGCAAGCTTTCTAGACCAT
BO13319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL23-RD | 453 | CG1320-PD | 1..450 | 17..466 | 2250 | 100 | Plus |
mRpL23-RC | 453 | CG1320-PC | 1..450 | 17..466 | 2250 | 100 | Plus |
mRpL23-RB | 453 | CG1320-PB | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL23-RD | 591 | CG1320-RD | 73..523 | 16..466 | 2255 | 100 | Plus |
mRpL23-RC | 560 | CG1320-RC | 42..492 | 16..466 | 2255 | 100 | Plus |
mRpL23-RB | 622 | CG1320-RB | 104..554 | 16..466 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2373129..2373423 | 310..16 | 1475 | 100 | Minus |
3L | 28110227 | 3L | 2372912..2373068 | 466..310 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:12:33 has no hits.
BO13319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:12 Download gff for
BO13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 1..453 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:54 Download gff for
BO13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 104..560 | 16..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:31 Download gff for
BO13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 105..554 | 17..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:12 Download gff for
BO13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 104..560 | 16..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:47 Download gff for
BO13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL23-RB | 105..554 | 17..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:47 Download gff for
BO13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2373129..2373422 | 17..310 | 100 | | Minus |
3L | 2372910..2373067 | 311..468 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:31 Download gff for
BO13319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2372910..2373067 | 311..468 | 98 | <- | Minus |
arm_3L | 2373129..2373422 | 17..310 | 100 | | Minus |
BO13319.pep Sequence
Translation from 16 to 484
> BO13319.pep
MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKY
DVRNYLEKIYKLPVVDVRTRIAMGETKKDQTYGYITKKDDVKLAYVTLPR
EESFVFPDFFSEKAEKQAKEEKSLDESKAGFRRFLDRNKKRPGTPGWFSI
ASFLDH
BO13319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL23-PD | 150 | CG1320-PD | 1..150 | 1..150 | 796 | 100 | Plus |
mRpL23-PC | 150 | CG1320-PC | 1..150 | 1..150 | 796 | 100 | Plus |
mRpL23-PB | 150 | CG1320-PB | 1..150 | 1..150 | 796 | 100 | Plus |
mRpL23-PA | 150 | CG1320-PA | 1..150 | 1..150 | 796 | 100 | Plus |