Clone BO13319 Report

Search the DGRC for BO13319

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL23-RA
Protein status:BO13319.pep: validated full length
Sequenced Size:484

Clone Sequence Records

BO13319.3prime Sequence

482 bp (481 high quality bases) assembled on 2006-05-08

> BO13319.3prime
ATGGTCTAGAAAGCTTGCAATGGAAAACCAGCCCGGCGTGCCGGGTCGCT
TCTTGTTCCTGTCCAGAAATCTGCGGAAACCGGCTTTCGATTCATCCAGC
GACTTTTCCTCCTTGGCCTGCTTCTCAGCCTTTTCGGAAAAGAAGTCGGG
GAAGACAAAGGACTCCTCCCTGGGCAATGTTACATAAGCCAGCTTCACGT
CGTCTTTTTTGGTGATGTAGCCGTAGGTCTGATCCTTCTTGGTCTCGCCC
ATGGCAATCCGAGTACGCACATCCACCACCGGCAGCTTGTAGATCTTCTC
CAGATAGTTACGCACATCGTACTTGGTCATTTCCATGGACACCGAAAAAG
TGACCACATTGGGTGGCTGTTCCTCCGTGGGTCGGATTAGCTTCATCCAG
AAGTTGGGAAGGAAAACGCGAAGCTGCGGATTGCCGCGCTGATAGATGGG
ATACCACCTCGTGGACATGTCGACTGATAACT

BO13319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1320-PA 453 mRpL23-RA 1..450 468..19 2250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL23-RD 591 CG1320-RD 73..523 469..19 2255 100 Minus
mRpL23-RC 560 CG1320-RC 42..492 469..19 2255 100 Minus
mRpL23-RB 622 CG1320-RB 104..554 469..19 2255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2373129..2373423 175..469 1475 100 Plus
3L 28110227 3L 2372912..2373068 19..175 785 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:34:40 has no hits.

BO13319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:28 Download gff for BO13319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1320-PA 1..453 18..468 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:08 Download gff for BO13319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1320-PA 1..453 18..468 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:38 Download gff for BO13319.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 104..560 10..469 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:27 Download gff for BO13319.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 104..560 10..469 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:27 Download gff for BO13319.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2372905..2373067 10..174 97 <- Plus
3L 2373129..2373423 175..469 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:38 Download gff for BO13319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2372905..2373067 10..174 97 <- Plus
arm_3L 2373129..2373423 175..469 100   Plus

BO13319.5prime Sequence

482 bp (481 high quality bases) assembled on 2006-05-08

> BO13319.5prime
GAAGTTATCAGTCGACATGTCCACGAGGTGGTATCCCATCTATCAGCGCG
GCAATCCGCAGCTTCGCGTTTTCCTTCCCAACTTCTGGATGAAGCTAATC
CGACCCACGGAGGAACAGCCACCCAATGTGGTCACTTTTTCGGTGTCCAT
GGAAATGACCAAGTACGATGTGCGTAACTATCTGGAGAAGATCTACAAGC
TGCCGGTGGTGGATGTGCGTACTCGGATTGCCATGGGCGAGACCAAGAAG
GATCAGACCTACGGCTACATCACCAAAAAAGACGACGTGAAGCTGGCTTA
TGTAACATTGCCCAGGGAGGAGTCCTTTGTCTTCCCCGACTTCTTTTCCG
AAAAGGCTGAGAAGCAGGCCAAGGAGGAAAAGTCGCTGGATGAATCGAAA
GCCGGTTTCCGCAGATTTCTGGACAGGAACAAGAAGCGACCCGGCACGCC
GGGCTGGTTTTCCATTGCAAGCTTTCTAGACC

BO13319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1320-PA 453 mRpL23-RA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL23-RD 591 CG1320-RD 73..523 16..466 2255 100 Plus
mRpL23-RC 560 CG1320-RC 42..492 16..466 2255 100 Plus
mRpL23-RB 622 CG1320-RB 104..554 16..466 2255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2373129..2373423 310..16 1475 100 Minus
3L 28110227 3L 2372912..2373068 466..310 785 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:44:13 has no hits.

BO13319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:29 Download gff for BO13319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1320-PA 1..453 17..467 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:09 Download gff for BO13319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1320-PA 1..453 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:22 Download gff for BO13319.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 104..560 16..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:55 Download gff for BO13319.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 104..560 16..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:55 Download gff for BO13319.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2372905..2373067 311..475 97 <- Minus
3L 2373129..2373423 16..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:22 Download gff for BO13319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2372905..2373067 311..475 97 <- Minus
arm_3L 2373129..2373423 16..310 100   Minus

BO13319.complete Sequence

484 bp assembled on 2006-10-11

GenBank Submission: FJ632755

> BO13319.complete
GAAGTTATCAGTCGACATGTCCACGAGGTGGTATCCCATCTATCAGCGCG
GCAATCCGCAGCTTCGCGTTTTCCTTCCCAACTTCTGGATGAAGCTAATC
CGACCCACGGAGGAACAGCCACCCAATGTGGTCACTTTTTCGGTGTCCAT
GGAAATGACCAAGTACGATGTGCGTAACTATCTGGAGAAGATCTACAAGC
TGCCGGTGGTGGATGTGCGTACTCGGATTGCCATGGGCGAGACCAAGAAG
GATCAGACCTACGGCTACATCACCAAAAAAGACGACGTGAAGCTGGCTTA
TGTAACATTGCCCAGGGAGGAGTCCTTTGTCTTCCCCGACTTCTTTTCCG
AAAAGGCTGAGAAGCAGGCCAAGGAGGAAAAGTCGCTGGATGAATCGAAA
GCCGGTTTCCGCAGATTTCTGGACAGGAACAAGAAGCGACCCGGCACGCC
GGGCTGGTTTTCCATTGCAAGCTTTCTAGACCAT

BO13319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL23-RD 453 CG1320-PD 1..450 17..466 2250 100 Plus
mRpL23-RC 453 CG1320-PC 1..450 17..466 2250 100 Plus
mRpL23-RB 453 CG1320-PB 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL23-RD 591 CG1320-RD 73..523 16..466 2255 100 Plus
mRpL23-RC 560 CG1320-RC 42..492 16..466 2255 100 Plus
mRpL23-RB 622 CG1320-RB 104..554 16..466 2255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2373129..2373423 310..16 1475 100 Minus
3L 28110227 3L 2372912..2373068 466..310 785 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:12:33 has no hits.

BO13319.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:12 Download gff for BO13319.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 1..453 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:54 Download gff for BO13319.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 104..560 16..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:31 Download gff for BO13319.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 105..554 17..468 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:12 Download gff for BO13319.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 104..560 16..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:47 Download gff for BO13319.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL23-RB 105..554 17..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:47 Download gff for BO13319.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2373129..2373422 17..310 100   Minus
3L 2372910..2373067 311..468 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:31 Download gff for BO13319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2372910..2373067 311..468 98 <- Minus
arm_3L 2373129..2373422 17..310 100   Minus

BO13319.pep Sequence

Translation from 16 to 484

> BO13319.pep
MSTRWYPIYQRGNPQLRVFLPNFWMKLIRPTEEQPPNVVTFSVSMEMTKY
DVRNYLEKIYKLPVVDVRTRIAMGETKKDQTYGYITKKDDVKLAYVTLPR
EESFVFPDFFSEKAEKQAKEEKSLDESKAGFRRFLDRNKKRPGTPGWFSI
ASFLDH

BO13319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL23-PD 150 CG1320-PD 1..150 1..150 796 100 Plus
mRpL23-PC 150 CG1320-PC 1..150 1..150 796 100 Plus
mRpL23-PB 150 CG1320-PB 1..150 1..150 796 100 Plus
mRpL23-PA 150 CG1320-PA 1..150 1..150 796 100 Plus