Clone Sequence Records
BO13320.3prime Sequence
635 bp (615 high quality bases) assembled on 2006-05-08
> BO13320.3prime
ATGGTCTAGAAAGCTTGCTGAGGTGTCCATCATTTTTAGATGAGCTTCCG
TCAGAATGCACTTCGTCATGTGACAGGAGCAAGGCACTGGATGCTCCTCT
GTGTTGGGGTCTAGCAAATCCACCTCCAGATTGTATTTACGCATATCGGC
AGCACTGCGCTTCATTGTGATTTGAAATGCAATGGGTGACTTCTCCTCCA
GATTTTCGCAGGATTCCTCGGGCAGGACGACTACACACTGCTTCCAATGC
GTTGGCGGGGATAGCGGCGATGTGCTTAGAACAAAATCTTCGCCAGGAAA
CTGTACATCGAACCAAATGCAGAAGCCCTGGTGATTGCCCGCCTTCTGGG
CTGTTATTACCTCCTTGAACTGAATGCTGTCCAAATCGCTGGCTTCCACA
TCCAGCAGATTCATCCAGTGAAAGACGACGCCCTCGTGCAGAAGATCTTG
CGGATTCAGCTGTGTAATCTCCGGTCGGGATGACTTTTGGGTTCTGAGTT
TTCTGGCAAACGTGTCCATTTTGATGCCGTCCACGTTGTGCCAATCATCG
AAGAGCGATGGTACCGAGCAGGGTGCCACGAAAATTGTGCACTCGCTGGG
GAACAGGAGTCCACCCTCCTTGAGGAACTTGTCCC
BO13320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16840-PA | 1026 | Art8-RA | 407..1023 | 635..19 | 3085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup154-RD | 5420 | CG4579-RD | 4413..5029 | 19..635 | 3085 | 100 | Plus |
Art8-RA | 1210 | CG16840-RA | 501..1117 | 635..19 | 3085 | 100 | Minus |
Nup154-RC | 4612 | CG4579-RC | 4346..4612 | 19..285 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11009914..11010530 | 19..635 | 3085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:25:32 has no hits.
BO13320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:30 Download gff for
BO13320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-PA | 407..1026 | 16..635 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:10 Download gff for
BO13320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16840-PA | 407..1026 | 16..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:58:20 Download gff for
BO13320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 501..1123 | 11..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:22 Download gff for
BO13320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 501..1123 | 11..635 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:22 Download gff for
BO13320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11009908..11010530 | 11..635 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:58:20 Download gff for
BO13320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11009908..11010530 | 11..635 | 99 | | Plus |
BO13320.5prime Sequence
693 bp (645 high quality bases) assembled on 2006-05-08
> BO13320.5prime
GAAGTTATCAGTCGACATGGCGAACACTTATTTCGATGAGTATGAAAACT
TGGAGATCCACGAGCTCATGCTGAAGGATCGTCCTCGGCAAGAAGCCTAC
TACAATGCGATATTGGGGAATAAGGATCTGTTCAAGGACAAGATCGTAAT
GGATGTTGGTGCCGGCACAGGGATTCTGTCCGCCTTTTGTGCGAAAGCAG
GAGCCCGTTTGGTCTACGCCGTAGAAGCATCCAATGTGGCCACCAAAGTT
GCGCTGGATTTGATTGAGGATAACGGCCTGACGAACGTGGTGAAGGTGAT
CCAGTCGCGTGTTGAGGAATTCGTACTGCCTGCCGAGGCGGAAAAGGTGG
ACATCATTGTGTCCGAGTGGATGGGCTTCTACCTGCTGCACGAGGGCATG
TTGGACTCGGTTCTCCTGGCCCGGGACAAGTTCCTCAAGGAGGGTGGACT
CCTGTTCCCCAGCGAGTGCACAATTTTCGTGGCACCCTGCTCGGTACCAT
CGCTCTTCGATGATTGGCACAACGTGGACGGCATCAAAATGGACACGTTT
GCCAGAAAACTCAGAACCCCAAAGTCATCCCGACCGGAGATTACACAGCT
GAATCCGCAAGATCTTCTGCACGAGGGCGTCGTCTTTCACTGGATGATTC
TGCTGGATGTGGAAGCCAGCGATTTGGACAGCATTCAGTTCAA
BO13320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16840-PA | 1026 | Art8-RA | 1..677 | 17..693 | 3335 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art8-RA | 1210 | CG16840-RA | 94..771 | 16..693 | 3360 | 99.7 | Plus |
Nup154-RD | 5420 | CG4579-RD | 4759..5398 | 693..54 | 3170 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11010260..11010899 | 693..54 | 3170 | 99.7 | Minus |
2L | 23513712 | 2L | 11010954..11010993 | 55..16 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:20:17 has no hits.
BO13320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:31 Download gff for
BO13320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:12 Download gff for
BO13320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16840-PA | 1..675 | 17..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:26 Download gff for
BO13320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 94..769 | 16..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:54 Download gff for
BO13320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 94..769 | 16..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:54 Download gff for
BO13320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11010262..11010897 | 56..691 | 99 | <- | Minus |
2L | 11010954..11010993 | 16..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:26 Download gff for
BO13320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11010262..11010897 | 56..691 | 99 | <- | Minus |
arm_2L | 11010954..11010993 | 16..55 | 100 | | Minus |
BO13320.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ632756
> BO13320.complete
GAAGTTATCAGTCGACATGGCGAACACTTATTTCGATGAGTATGAAAACT
TGGAGATCCACGAGCTCATGCTGAAGGATCGTCCTCGGCAAGAAGCCTAC
TACAATGCGATATTGGGGAATAAGGATCTGTTCAAGGACAAGATCGTAAT
GGATGTTGGTGCCGGCACAGGGATTCTGTCCGCCTTTTGTGCGAAAGCAG
GAGCCCGTTTGGTCTACGCCGTAGAAGCATCCAATGTGGCCACCAAAGTT
GCGCTGGATTTGATTGAGGATAACGGCCTGACGAACGTGGTGAAGGTGAT
CCAGTCGCGTGTTGAGGAATTCGTACTGCCTGCCGAGGCGGAAAAGGTGG
ACATCATTGTGTCCGAGTGGATGGGCTTCTACCTGCTGCACGAGGGCATG
TTGGACTCGGTTCTCCTGGCCCGGGACAAGTTCCTCAAGGAGGGTGGACT
CCTGTTCCCCAGCGAGTGCACAATTTTCGTGGCACCCTGCTCGGTACCAT
CGCTCTTCGATGATTGGCACAACGTGGACGGCATCAAAATGGACACGTTT
GCCAGAAAACTCAGAACCCAAAAGTCATCCCGACCGGAGATTACACAGCT
GAATCCGCAAGATCTTCTGCACGAGGGCGTCGTCTTTCACTGGATGAATC
TGCTGGATGTGGAAGCCAGCGATTTGGACAGCATTCAGTTCAAGGAGGTA
ATAACAGCCCAGAAGGCGGGCAATCACCAGGGCTTCTGCATTTGGTTCGA
TGTACAGTTTCCTGGCGAAGATTTTGTTCTAAGCACATCGCCGCTATCCC
CGCCAACGCATTGGAAGCAGTGTGTAGTCGTCCTGCCCGAGGAATCCTGC
GAAAATCTGGAGGAGAAGTCACCCATTGCATTTCAAATCACAATGAAGCG
CAGTGCTGCCGATATGCGTAAATACAATCTGGAGGTGGATTTGCTAGACC
CCAACACAGAGGAGCATCCAGTGCCTTGCTCCTGTCACATGACGAAGTGC
ATTCTGACGGAAGCTCATCTAAAAATGATGGACACCTCAGCAAGCTTTCT
AGACCAT
BO13320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art8-RA | 1026 | CG16840-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art8-RA | 1210 | CG16840-RA | 94..1117 | 16..1039 | 5120 | 100 | Plus |
Nup154-RD | 5420 | CG4579-RD | 4413..5398 | 1039..54 | 4930 | 100 | Minus |
Nup154-RC | 4612 | CG4579-RC | 4346..4612 | 1039..773 | 1335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11009914..11010899 | 1039..54 | 4930 | 100 | Minus |
2L | 23513712 | 2L | 11010954..11010993 | 55..16 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:32:31 has no hits.
BO13320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:41 Download gff for
BO13320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:59 Download gff for
BO13320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 93..1122 | 16..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:31 Download gff for
BO13320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 95..1117 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:41 Download gff for
BO13320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 93..1122 | 16..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:51 Download gff for
BO13320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art8-RA | 95..1117 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:51 Download gff for
BO13320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11009911..11010897 | 56..1041 | 99 | <- | Minus |
2L | 11010954..11010992 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:31 Download gff for
BO13320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11009911..11010897 | 56..1041 | 99 | <- | Minus |
arm_2L | 11010954..11010992 | 17..55 | 100 | | Minus |
BO13320.pep Sequence
Translation from 16 to 1057
> BO13320.pep
MANTYFDEYENLEIHELMLKDRPRQEAYYNAILGNKDLFKDKIVMDVGAG
TGILSAFCAKAGARLVYAVEASNVATKVALDLIEDNGLTNVVKVIQSRVE
EFVLPAEAEKVDIIVSEWMGFYLLHEGMLDSVLLARDKFLKEGGLLFPSE
CTIFVAPCSVPSLFDDWHNVDGIKMDTFARKLRTQKSSRPEITQLNPQDL
LHEGVVFHWMNLLDVEASDLDSIQFKEVITAQKAGNHQGFCIWFDVQFPG
EDFVLSTSPLSPPTHWKQCVVVLPEESCENLEEKSPIAFQITMKRSAADM
RKYNLEVDLLDPNTEEHPVPCSCHMTKCILTEAHLKMMDTSASFLDH
BO13320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art8-PA | 341 | CG16840-PA | 1..341 | 1..341 | 1792 | 100 | Plus |
Art1-PA | 376 | CG6554-PA | 56..358 | 5..309 | 459 | 36.3 | Plus |
Art6-PA | 341 | CG9927-PA | 19..322 | 5..309 | 448 | 38.1 | Plus |
Art4-PB | 530 | CG5358-PB | 141..418 | 2..274 | 409 | 37.3 | Plus |
Art4-PA | 530 | CG5358-PA | 141..418 | 2..274 | 409 | 37.3 | Plus |