Clone BO13320 Report

Search the DGRC for BO13320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptArt8-RA
Protein status:BO13320.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO13320.3prime Sequence

635 bp (615 high quality bases) assembled on 2006-05-08

> BO13320.3prime
ATGGTCTAGAAAGCTTGCTGAGGTGTCCATCATTTTTAGATGAGCTTCCG
TCAGAATGCACTTCGTCATGTGACAGGAGCAAGGCACTGGATGCTCCTCT
GTGTTGGGGTCTAGCAAATCCACCTCCAGATTGTATTTACGCATATCGGC
AGCACTGCGCTTCATTGTGATTTGAAATGCAATGGGTGACTTCTCCTCCA
GATTTTCGCAGGATTCCTCGGGCAGGACGACTACACACTGCTTCCAATGC
GTTGGCGGGGATAGCGGCGATGTGCTTAGAACAAAATCTTCGCCAGGAAA
CTGTACATCGAACCAAATGCAGAAGCCCTGGTGATTGCCCGCCTTCTGGG
CTGTTATTACCTCCTTGAACTGAATGCTGTCCAAATCGCTGGCTTCCACA
TCCAGCAGATTCATCCAGTGAAAGACGACGCCCTCGTGCAGAAGATCTTG
CGGATTCAGCTGTGTAATCTCCGGTCGGGATGACTTTTGGGTTCTGAGTT
TTCTGGCAAACGTGTCCATTTTGATGCCGTCCACGTTGTGCCAATCATCG
AAGAGCGATGGTACCGAGCAGGGTGCCACGAAAATTGTGCACTCGCTGGG
GAACAGGAGTCCACCCTCCTTGAGGAACTTGTCCC

BO13320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG16840-PA 1026 Art8-RA 407..1023 635..19 3085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Nup154-RD 5420 CG4579-RD 4413..5029 19..635 3085 100 Plus
Art8-RA 1210 CG16840-RA 501..1117 635..19 3085 100 Minus
Nup154-RC 4612 CG4579-RC 4346..4612 19..285 1335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11009914..11010530 19..635 3085 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:25:32 has no hits.

BO13320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:30 Download gff for BO13320.3prime
Subject Subject Range Query Range Percent Splice Strand
Art8-PA 407..1026 16..635 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:10 Download gff for BO13320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16840-PA 407..1026 16..635 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:58:20 Download gff for BO13320.3prime
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 501..1123 11..635 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:50:22 Download gff for BO13320.3prime
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 501..1123 11..635 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:50:22 Download gff for BO13320.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11009908..11010530 11..635 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:58:20 Download gff for BO13320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11009908..11010530 11..635 99   Plus

BO13320.5prime Sequence

693 bp (645 high quality bases) assembled on 2006-05-08

> BO13320.5prime
GAAGTTATCAGTCGACATGGCGAACACTTATTTCGATGAGTATGAAAACT
TGGAGATCCACGAGCTCATGCTGAAGGATCGTCCTCGGCAAGAAGCCTAC
TACAATGCGATATTGGGGAATAAGGATCTGTTCAAGGACAAGATCGTAAT
GGATGTTGGTGCCGGCACAGGGATTCTGTCCGCCTTTTGTGCGAAAGCAG
GAGCCCGTTTGGTCTACGCCGTAGAAGCATCCAATGTGGCCACCAAAGTT
GCGCTGGATTTGATTGAGGATAACGGCCTGACGAACGTGGTGAAGGTGAT
CCAGTCGCGTGTTGAGGAATTCGTACTGCCTGCCGAGGCGGAAAAGGTGG
ACATCATTGTGTCCGAGTGGATGGGCTTCTACCTGCTGCACGAGGGCATG
TTGGACTCGGTTCTCCTGGCCCGGGACAAGTTCCTCAAGGAGGGTGGACT
CCTGTTCCCCAGCGAGTGCACAATTTTCGTGGCACCCTGCTCGGTACCAT
CGCTCTTCGATGATTGGCACAACGTGGACGGCATCAAAATGGACACGTTT
GCCAGAAAACTCAGAACCCCAAAGTCATCCCGACCGGAGATTACACAGCT
GAATCCGCAAGATCTTCTGCACGAGGGCGTCGTCTTTCACTGGATGATTC
TGCTGGATGTGGAAGCCAGCGATTTGGACAGCATTCAGTTCAA

BO13320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG16840-PA 1026 Art8-RA 1..677 17..693 3335 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Art8-RA 1210 CG16840-RA 94..771 16..693 3360 99.7 Plus
Nup154-RD 5420 CG4579-RD 4759..5398 693..54 3170 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11010260..11010899 693..54 3170 99.7 Minus
2L 23513712 2L 11010954..11010993 55..16 200 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:20:17 has no hits.

BO13320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:31 Download gff for BO13320.5prime
Subject Subject Range Query Range Percent Splice Strand
Art8-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:12 Download gff for BO13320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16840-PA 1..675 17..691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:26 Download gff for BO13320.5prime
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 94..769 16..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:01:54 Download gff for BO13320.5prime
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 94..769 16..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:01:54 Download gff for BO13320.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11010262..11010897 56..691 99 <- Minus
2L 11010954..11010993 16..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:26 Download gff for BO13320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11010262..11010897 56..691 99 <- Minus
arm_2L 11010954..11010993 16..55 100   Minus

BO13320.complete Sequence

1057 bp assembled on 2006-10-11

GenBank Submission: FJ632756

> BO13320.complete
GAAGTTATCAGTCGACATGGCGAACACTTATTTCGATGAGTATGAAAACT
TGGAGATCCACGAGCTCATGCTGAAGGATCGTCCTCGGCAAGAAGCCTAC
TACAATGCGATATTGGGGAATAAGGATCTGTTCAAGGACAAGATCGTAAT
GGATGTTGGTGCCGGCACAGGGATTCTGTCCGCCTTTTGTGCGAAAGCAG
GAGCCCGTTTGGTCTACGCCGTAGAAGCATCCAATGTGGCCACCAAAGTT
GCGCTGGATTTGATTGAGGATAACGGCCTGACGAACGTGGTGAAGGTGAT
CCAGTCGCGTGTTGAGGAATTCGTACTGCCTGCCGAGGCGGAAAAGGTGG
ACATCATTGTGTCCGAGTGGATGGGCTTCTACCTGCTGCACGAGGGCATG
TTGGACTCGGTTCTCCTGGCCCGGGACAAGTTCCTCAAGGAGGGTGGACT
CCTGTTCCCCAGCGAGTGCACAATTTTCGTGGCACCCTGCTCGGTACCAT
CGCTCTTCGATGATTGGCACAACGTGGACGGCATCAAAATGGACACGTTT
GCCAGAAAACTCAGAACCCAAAAGTCATCCCGACCGGAGATTACACAGCT
GAATCCGCAAGATCTTCTGCACGAGGGCGTCGTCTTTCACTGGATGAATC
TGCTGGATGTGGAAGCCAGCGATTTGGACAGCATTCAGTTCAAGGAGGTA
ATAACAGCCCAGAAGGCGGGCAATCACCAGGGCTTCTGCATTTGGTTCGA
TGTACAGTTTCCTGGCGAAGATTTTGTTCTAAGCACATCGCCGCTATCCC
CGCCAACGCATTGGAAGCAGTGTGTAGTCGTCCTGCCCGAGGAATCCTGC
GAAAATCTGGAGGAGAAGTCACCCATTGCATTTCAAATCACAATGAAGCG
CAGTGCTGCCGATATGCGTAAATACAATCTGGAGGTGGATTTGCTAGACC
CCAACACAGAGGAGCATCCAGTGCCTTGCTCCTGTCACATGACGAAGTGC
ATTCTGACGGAAGCTCATCTAAAAATGATGGACACCTCAGCAAGCTTTCT
AGACCAT

BO13320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Art8-RA 1026 CG16840-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Art8-RA 1210 CG16840-RA 94..1117 16..1039 5120 100 Plus
Nup154-RD 5420 CG4579-RD 4413..5398 1039..54 4930 100 Minus
Nup154-RC 4612 CG4579-RC 4346..4612 1039..773 1335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11009914..11010899 1039..54 4930 100 Minus
2L 23513712 2L 11010954..11010993 55..16 200 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:32:31 has no hits.

BO13320.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:41 Download gff for BO13320.complete
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 1..1026 17..1042 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:59 Download gff for BO13320.complete
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 93..1122 16..1047 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:31 Download gff for BO13320.complete
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 95..1117 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:41 Download gff for BO13320.complete
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 93..1122 16..1047 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:51 Download gff for BO13320.complete
Subject Subject Range Query Range Percent Splice Strand
Art8-RA 95..1117 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:51 Download gff for BO13320.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11009911..11010897 56..1041 99 <- Minus
2L 11010954..11010992 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:31 Download gff for BO13320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11009911..11010897 56..1041 99 <- Minus
arm_2L 11010954..11010992 17..55 100   Minus

BO13320.pep Sequence

Translation from 16 to 1057

> BO13320.pep
MANTYFDEYENLEIHELMLKDRPRQEAYYNAILGNKDLFKDKIVMDVGAG
TGILSAFCAKAGARLVYAVEASNVATKVALDLIEDNGLTNVVKVIQSRVE
EFVLPAEAEKVDIIVSEWMGFYLLHEGMLDSVLLARDKFLKEGGLLFPSE
CTIFVAPCSVPSLFDDWHNVDGIKMDTFARKLRTQKSSRPEITQLNPQDL
LHEGVVFHWMNLLDVEASDLDSIQFKEVITAQKAGNHQGFCIWFDVQFPG
EDFVLSTSPLSPPTHWKQCVVVLPEESCENLEEKSPIAFQITMKRSAADM
RKYNLEVDLLDPNTEEHPVPCSCHMTKCILTEAHLKMMDTSASFLDH

BO13320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Art8-PA 341 CG16840-PA 1..341 1..341 1792 100 Plus
Art1-PA 376 CG6554-PA 56..358 5..309 459 36.3 Plus
Art6-PA 341 CG9927-PA 19..322 5..309 448 38.1 Plus
Art4-PB 530 CG5358-PB 141..418 2..274 409 37.3 Plus
Art4-PA 530 CG5358-PA 141..418 2..274 409 37.3 Plus