Clone Sequence Records
BO13325.3prime Sequence
874 bp (702 high quality bases) assembled on 2006-05-08
> BO13325.3prime
ATGGTCTAGAAAGCTTGCGTAGAAACGTTTTCGCGCGTTGCGATCCTTGA
AGTAGGAGATGGCGAAGATGGCCACTGCAGCCGCCACGACAACCACGAAG
AGAAGGATGAAGAAGATCTTGGCGTTGGACATTCCCGGCTTGGGATCTTC
TTTGTGCTCGCGCGGGGGCTCGAATGTCTTGGCATTCGGTATGATATTGG
AGCGCCGGATAATCTCATCGTGATTTACGTTCAAGTCCAGGTCATAGAAC
TTGAAACTGTGAATATCGTGATTGTCGGACAGATCACCCGTCGTCGCAGA
CATGCCGAAGTGGTAGCCCGTGGGTAGCTCAACGTTGGCCACTACAAAGC
AGTTCTTCCATTCGTTGCGGTTCTCCAGATCTGTGGAAACCGACAGAATG
TCGTTTTCGTATCGAATGCTAACCAGCGTCTCGTACTCCACATTGCGGAA
ACGAACTTCGCAGCCGGCCAGCTGAGTGTGCGTTCCATCGCGATCGTGGT
CGTAGCTCCAGCTGCCATTGTTCACCATGGCGCTGAGATATGGATGTTGG
TGGTTGTGTGGACCATTGTGATTGCTATAGGTGTCCAGAATGATGGCCAG
TCCGGAGAAGTGATCCTTGCTGCCAAAGACCGGCCCGGTTTGCATGCGCT
CCTTTGTGTACCAAATGGCAAATCCCGTCGCCGAACAGTTCAGTTCCCTT
GCCGTGCACCTTAAAGCCAACGTGCACTTCCCAATTGCGAGTCATCACGG
GCGAGTAGTTCCAAAGTGCACCGCTCTTGGACTGTAAGTCCGGGCGTCGT
CCTTATTAGTTGCTGGTCACCATCGGGGTACCCCAGGAAGTCCCAGTGTG
GCACGATCACGCCTACCCCTTGGA
BO13325.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5510-PA | 990 | CG5510-RA | 331..987 | 675..19 | 3285 | 100 | Minus |
CG5510-PA | 990 | CG5510-RA | 214..332 | 793..675 | 595 | 100 | Minus |
CG5510-PA | 990 | CG5510-RA | 134..176 | 874..832 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5510-RA | 1362 | CG5510-RA | 243..1096 | 874..19 | 4080 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24168474..24168803 | 223..552 | 1650 | 100 | Plus |
3R | 32079331 | 3R | 24167941..24168144 | 19..222 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 24168857..24169055 | 553..752 | 950 | 99.5 | Plus |
3R | 32079331 | 3R | 24169131..24169248 | 752..870 | 350 | 88.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:22:56 has no hits.
BO13325.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:38 Download gff for
BO13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-PA | 135..990 | 16..873 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:23 Download gff for
BO13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-PA | 135..990 | 16..873 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:17 Download gff for
BO13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 244..1108 | 6..873 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:13:59 Download gff for
BO13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 244..1108 | 6..873 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:13:59 Download gff for
BO13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24167929..24168144 | 6..222 | 98 | <- | Plus |
3R | 24168474..24168803 | 223..552 | 100 | <- | Plus |
3R | 24168857..24169054 | 553..751 | 99 | <- | Plus |
3R | 24169131..24169249 | 752..873 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:17 Download gff for
BO13325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19993651..19993866 | 6..222 | 98 | <- | Plus |
arm_3R | 19994196..19994525 | 223..552 | 100 | <- | Plus |
arm_3R | 19994579..19994776 | 553..751 | 99 | <- | Plus |
arm_3R | 19994853..19994971 | 752..873 | 91 | | Plus |
BO13325.5prime Sequence
806 bp (700 high quality bases) assembled on 2006-05-08
> BO13325.5prime
GAAGTTATCAGTCGACATGACCAAACCGACGCGCGAACACTGTTCCCTGG
CCCTGCTGGCGCTTCTCGTCGCCCCGTTCGTGGTGCTCGGTGAGGATATG
CCCAGGGAGCCGGACTACATGAAGCGGGAGCACAGTTTGGTGCGTCCATT
CCAAGGCGTAGGCGTGATCCTGCCACACTGGGACTTCCTGGGTAACACGA
TGGTGACCAGCAACTATATAAGACTGACGCCGGACTTACAGTCCAAGAGC
GGTGCACTTTGGAACTACTCGCCCGTGATGACTCGCAATTGGGAAGTGCA
CGTTGGCTTTAAGGTGCACGGCAAGGGAACTGAACTGTTCGGCGACGGAT
TTGCCATTTGGTACACAAAGGAGCGCATGCAAACCGGGCCGGTCTTTGGC
AGCAAGGATCACTTCTCCGGACTGGCCATCATTCTGGACACCTATAGCAA
TCACAATGGTCCACACAACCACCAACATCCATATCTCAGCGCCATGGTGA
ACAATGGCAGCTGGAGCTACGACCACGATCGCGATGGAACGCACACTCAG
CTGGCCGGCTGCGAAGTTCGTTTCCGCAATGTGGAGTACGAGACGCTGGT
TAGCATTCGATACGAAAACGACATTCTGTCGGTTTCCACAGATCTGGAGA
ACCGCAACGAATGGAAGAACTGCTTTGTAGTGGCCAACGTTGAGCTACCC
ACGGGCTACCACTTCGGCATGTCTGCGACGACGGGTGATCTGTCCGACAA
TCACGATATTCACAGTTTTCAGTTCTATGACCTGGACTTGAACGTAAATC
ACGATG
BO13325.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5510-PA | 990 | CG5510-RA | 1..790 | 17..806 | 3900 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5510-RA | 1362 | CG5510-RA | 109..899 | 16..806 | 3925 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24168474..24168803 | 799..470 | 1620 | 99.4 | Minus |
3R | 32079331 | 3R | 24168857..24169055 | 469..271 | 995 | 100 | Minus |
3R | 32079331 | 3R | 24169314..24169454 | 156..16 | 705 | 100 | Minus |
3R | 32079331 | 3R | 24169131..24169248 | 271..154 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:27:24 has no hits.
BO13325.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:39 Download gff for
BO13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-PA | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:25 Download gff for
BO13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-PA | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:29 Download gff for
BO13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 105..899 | 9..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:15 Download gff for
BO13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 105..899 | 9..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:15 Download gff for
BO13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24168474..24168803 | 470..799 | 99 | <- | Minus |
3R | 24168857..24169054 | 272..469 | 100 | <- | Minus |
3R | 24169131..24169246 | 156..271 | 100 | <- | Minus |
3R | 24169315..24169458 | 9..155 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:29 Download gff for
BO13325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19994196..19994525 | 470..799 | 99 | <- | Minus |
arm_3R | 19994579..19994776 | 272..469 | 100 | <- | Minus |
arm_3R | 19994853..19994968 | 156..271 | 100 | <- | Minus |
arm_3R | 19995037..19995180 | 9..155 | 97 | | Minus |
BO13325.complete Sequence
1021 bp assembled on 2006-10-11
GenBank Submission: FJ632757
> BO13325.complete
GAAGTTATCAGTCGACATGACCAAACCGACGCGCGAACACTGTTCCCTGG
CCCTGCTGGCGCTTCTCGTCGCCCCGTTCGTGGTGCTCGGTGAGGATATG
CCCAGGGAGCCGGACTACATGAAGCGGGAGCACAGTTTGGTGCGTCCATT
CCAAGGCGTAGGCGTGATCCTGCCACACTGGGACTTCCTGGGTAACACGA
TGGTGACCAGCAACTATATAAGACTGACGCCGGACTTACAGTCCAAGAGC
GGTGCACTTTGGAACTACTCGCCCGTGATGACTCGCAATTGGGAAGTGCA
CGTTGGCTTTAAGGTGCACGGCAAGGGAACTGAACTGTTCGGCGACGGAT
TTGCCATTTGGTACACAAAGGAGCGCATGCAAACCGGGCCGGTCTTTGGC
AGCAAGGATCACTTCTCCGGACTGGCCATCATTCTGGACACCTATAGCAA
TCACAATGGTCCACACAACCACCAACATCCATATCTCAGCGCCATGGTGA
ACAATGGCAGCTGGAGCTACGACCACGATCGCGATGGAACGCACACTCAG
CTGGCCGGCTGCGAAGTTCGTTTCCGCAATGTGGAGTACGAGACGCTGGT
TAGCATTCGATACGAAAACGACATTCTGTCGGTTTCCACAGATCTGGAGA
ACCGCAACGAATGGAAGAACTGCTTTGTAGTGGCCAACGTTGAGCTACCC
ACGGGCTACCACTTCGGCATGTCTGCGACGACGGGTGATCTGTCCGACAA
TCACGATATTCACAGTTTCAAGTTCTATGACCTGGACTTGAACGTAAATC
ACGATGAGATTATCCGGCGCTCCAATATCATACCGAATGCCAAGACATTC
GAGCCCCCGCGCGAGCACAAAGAAGATCCCAAGCCGGGAATGTCCAACGC
CAAGATCTTCTTCATCCTTCTCTTCGTGGTTGTCGTGGCGGCTGCAGTGG
CCATCTTCGCCATCTCCTACTTCAAGGATCGCAACGCGCGAAAACGTTTC
TACGCAAGCTTTCTAGACCAT
BO13325.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5510-RA | 990 | CG5510-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5510-RA | 1362 | CG5510-RA | 109..1096 | 16..1003 | 4940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24168474..24168803 | 799..470 | 1650 | 100 | Minus |
3R | 32079331 | 3R | 24167941..24168144 | 1003..800 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 24168857..24169055 | 469..271 | 995 | 100 | Minus |
3R | 32079331 | 3R | 24169314..24169454 | 156..16 | 705 | 100 | Minus |
3R | 32079331 | 3R | 24169131..24169248 | 271..154 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:08:47 has no hits.
BO13325.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:43 Download gff for
BO13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 1..990 | 17..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:02 Download gff for
BO13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 104..1107 | 9..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:18 Download gff for
BO13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 110..1096 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:43 Download gff for
BO13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 104..1107 | 9..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:43 Download gff for
BO13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5510-RA | 110..1096 | 17..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:43 Download gff for
BO13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24167938..24168144 | 800..1005 | 99 | <- | Minus |
3R | 24168474..24168803 | 470..799 | 100 | <- | Minus |
3R | 24168857..24169054 | 272..469 | 100 | <- | Minus |
3R | 24169131..24169246 | 156..271 | 100 | <- | Minus |
3R | 24169315..24169453 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:18 Download gff for
BO13325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19994579..19994776 | 272..469 | 100 | <- | Minus |
arm_3R | 19994196..19994525 | 470..799 | 100 | <- | Minus |
arm_3R | 19994853..19994968 | 156..271 | 100 | <- | Minus |
arm_3R | 19993660..19993866 | 800..1005 | 99 | <- | Minus |
arm_3R | 19995037..19995175 | 17..155 | 100 | | Minus |
BO13325.pep Sequence
Translation from 16 to 1021
> BO13325.pep
MTKPTREHCSLALLALLVAPFVVLGEDMPREPDYMKREHSLVRPFQGVGV
ILPHWDFLGNTMVTSNYIRLTPDLQSKSGALWNYSPVMTRNWEVHVGFKV
HGKGTELFGDGFAIWYTKERMQTGPVFGSKDHFSGLAIILDTYSNHNGPH
NHQHPYLSAMVNNGSWSYDHDRDGTHTQLAGCEVRFRNVEYETLVSIRYE
NDILSVSTDLENRNEWKNCFVVANVELPTGYHFGMSATTGDLSDNHDIHS
FKFYDLDLNVNHDEIIRRSNIIPNAKTFEPPREHKEDPKPGMSNAKIFFI
LLFVVVVAAAVAIFAISYFKDRNARKRFYASFLDH
BO13325.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5510-PA | 329 | CG5510-PA | 1..329 | 1..329 | 1780 | 100 | Plus |
ergic53-PB | 512 | CG6822-PB | 53..252 | 52..251 | 404 | 39.7 | Plus |
ergic53-PA | 512 | CG6822-PA | 53..252 | 52..251 | 404 | 39.7 | Plus |