Clone BO13325 Report

Search the DGRC for BO13325

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG5510-RA
Protein status:BO13325.pep: validated full length
Sequenced Size:1021

Clone Sequence Records

BO13325.3prime Sequence

874 bp (702 high quality bases) assembled on 2006-05-08

> BO13325.3prime
ATGGTCTAGAAAGCTTGCGTAGAAACGTTTTCGCGCGTTGCGATCCTTGA
AGTAGGAGATGGCGAAGATGGCCACTGCAGCCGCCACGACAACCACGAAG
AGAAGGATGAAGAAGATCTTGGCGTTGGACATTCCCGGCTTGGGATCTTC
TTTGTGCTCGCGCGGGGGCTCGAATGTCTTGGCATTCGGTATGATATTGG
AGCGCCGGATAATCTCATCGTGATTTACGTTCAAGTCCAGGTCATAGAAC
TTGAAACTGTGAATATCGTGATTGTCGGACAGATCACCCGTCGTCGCAGA
CATGCCGAAGTGGTAGCCCGTGGGTAGCTCAACGTTGGCCACTACAAAGC
AGTTCTTCCATTCGTTGCGGTTCTCCAGATCTGTGGAAACCGACAGAATG
TCGTTTTCGTATCGAATGCTAACCAGCGTCTCGTACTCCACATTGCGGAA
ACGAACTTCGCAGCCGGCCAGCTGAGTGTGCGTTCCATCGCGATCGTGGT
CGTAGCTCCAGCTGCCATTGTTCACCATGGCGCTGAGATATGGATGTTGG
TGGTTGTGTGGACCATTGTGATTGCTATAGGTGTCCAGAATGATGGCCAG
TCCGGAGAAGTGATCCTTGCTGCCAAAGACCGGCCCGGTTTGCATGCGCT
CCTTTGTGTACCAAATGGCAAATCCCGTCGCCGAACAGTTCAGTTCCCTT
GCCGTGCACCTTAAAGCCAACGTGCACTTCCCAATTGCGAGTCATCACGG
GCGAGTAGTTCCAAAGTGCACCGCTCTTGGACTGTAAGTCCGGGCGTCGT
CCTTATTAGTTGCTGGTCACCATCGGGGTACCCCAGGAAGTCCCAGTGTG
GCACGATCACGCCTACCCCTTGGA

BO13325.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5510-PA 990 CG5510-RA 331..987 675..19 3285 100 Minus
CG5510-PA 990 CG5510-RA 214..332 793..675 595 100 Minus
CG5510-PA 990 CG5510-RA 134..176 874..832 165 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5510-RA 1362 CG5510-RA 243..1096 874..19 4080 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24168474..24168803 223..552 1650 100 Plus
3R 32079331 3R 24167941..24168144 19..222 1020 100 Plus
3R 32079331 3R 24168857..24169055 553..752 950 99.5 Plus
3R 32079331 3R 24169131..24169248 752..870 350 88.2 Plus
Blast to na_te.dros performed on 2015-02-12 12:22:56 has no hits.

BO13325.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:38 Download gff for BO13325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5510-PA 135..990 16..873 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:23 Download gff for BO13325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5510-PA 135..990 16..873 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:17 Download gff for BO13325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 244..1108 6..873 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:13:59 Download gff for BO13325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 244..1108 6..873 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:13:59 Download gff for BO13325.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24167929..24168144 6..222 98 <- Plus
3R 24168474..24168803 223..552 100 <- Plus
3R 24168857..24169054 553..751 99 <- Plus
3R 24169131..24169249 752..873 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:17 Download gff for BO13325.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19993651..19993866 6..222 98 <- Plus
arm_3R 19994196..19994525 223..552 100 <- Plus
arm_3R 19994579..19994776 553..751 99 <- Plus
arm_3R 19994853..19994971 752..873 91   Plus

BO13325.5prime Sequence

806 bp (700 high quality bases) assembled on 2006-05-08

> BO13325.5prime
GAAGTTATCAGTCGACATGACCAAACCGACGCGCGAACACTGTTCCCTGG
CCCTGCTGGCGCTTCTCGTCGCCCCGTTCGTGGTGCTCGGTGAGGATATG
CCCAGGGAGCCGGACTACATGAAGCGGGAGCACAGTTTGGTGCGTCCATT
CCAAGGCGTAGGCGTGATCCTGCCACACTGGGACTTCCTGGGTAACACGA
TGGTGACCAGCAACTATATAAGACTGACGCCGGACTTACAGTCCAAGAGC
GGTGCACTTTGGAACTACTCGCCCGTGATGACTCGCAATTGGGAAGTGCA
CGTTGGCTTTAAGGTGCACGGCAAGGGAACTGAACTGTTCGGCGACGGAT
TTGCCATTTGGTACACAAAGGAGCGCATGCAAACCGGGCCGGTCTTTGGC
AGCAAGGATCACTTCTCCGGACTGGCCATCATTCTGGACACCTATAGCAA
TCACAATGGTCCACACAACCACCAACATCCATATCTCAGCGCCATGGTGA
ACAATGGCAGCTGGAGCTACGACCACGATCGCGATGGAACGCACACTCAG
CTGGCCGGCTGCGAAGTTCGTTTCCGCAATGTGGAGTACGAGACGCTGGT
TAGCATTCGATACGAAAACGACATTCTGTCGGTTTCCACAGATCTGGAGA
ACCGCAACGAATGGAAGAACTGCTTTGTAGTGGCCAACGTTGAGCTACCC
ACGGGCTACCACTTCGGCATGTCTGCGACGACGGGTGATCTGTCCGACAA
TCACGATATTCACAGTTTTCAGTTCTATGACCTGGACTTGAACGTAAATC
ACGATG

BO13325.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5510-PA 990 CG5510-RA 1..790 17..806 3900 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5510-RA 1362 CG5510-RA 109..899 16..806 3925 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24168474..24168803 799..470 1620 99.4 Minus
3R 32079331 3R 24168857..24169055 469..271 995 100 Minus
3R 32079331 3R 24169314..24169454 156..16 705 100 Minus
3R 32079331 3R 24169131..24169248 271..154 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:27:24 has no hits.

BO13325.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:39 Download gff for BO13325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5510-PA 1..790 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:25 Download gff for BO13325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5510-PA 1..790 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:29 Download gff for BO13325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 105..899 9..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:15 Download gff for BO13325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 105..899 9..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:15 Download gff for BO13325.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24168474..24168803 470..799 99 <- Minus
3R 24168857..24169054 272..469 100 <- Minus
3R 24169131..24169246 156..271 100 <- Minus
3R 24169315..24169458 9..155 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:29 Download gff for BO13325.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19994196..19994525 470..799 99 <- Minus
arm_3R 19994579..19994776 272..469 100 <- Minus
arm_3R 19994853..19994968 156..271 100 <- Minus
arm_3R 19995037..19995180 9..155 97   Minus

BO13325.complete Sequence

1021 bp assembled on 2006-10-11

GenBank Submission: FJ632757

> BO13325.complete
GAAGTTATCAGTCGACATGACCAAACCGACGCGCGAACACTGTTCCCTGG
CCCTGCTGGCGCTTCTCGTCGCCCCGTTCGTGGTGCTCGGTGAGGATATG
CCCAGGGAGCCGGACTACATGAAGCGGGAGCACAGTTTGGTGCGTCCATT
CCAAGGCGTAGGCGTGATCCTGCCACACTGGGACTTCCTGGGTAACACGA
TGGTGACCAGCAACTATATAAGACTGACGCCGGACTTACAGTCCAAGAGC
GGTGCACTTTGGAACTACTCGCCCGTGATGACTCGCAATTGGGAAGTGCA
CGTTGGCTTTAAGGTGCACGGCAAGGGAACTGAACTGTTCGGCGACGGAT
TTGCCATTTGGTACACAAAGGAGCGCATGCAAACCGGGCCGGTCTTTGGC
AGCAAGGATCACTTCTCCGGACTGGCCATCATTCTGGACACCTATAGCAA
TCACAATGGTCCACACAACCACCAACATCCATATCTCAGCGCCATGGTGA
ACAATGGCAGCTGGAGCTACGACCACGATCGCGATGGAACGCACACTCAG
CTGGCCGGCTGCGAAGTTCGTTTCCGCAATGTGGAGTACGAGACGCTGGT
TAGCATTCGATACGAAAACGACATTCTGTCGGTTTCCACAGATCTGGAGA
ACCGCAACGAATGGAAGAACTGCTTTGTAGTGGCCAACGTTGAGCTACCC
ACGGGCTACCACTTCGGCATGTCTGCGACGACGGGTGATCTGTCCGACAA
TCACGATATTCACAGTTTCAAGTTCTATGACCTGGACTTGAACGTAAATC
ACGATGAGATTATCCGGCGCTCCAATATCATACCGAATGCCAAGACATTC
GAGCCCCCGCGCGAGCACAAAGAAGATCCCAAGCCGGGAATGTCCAACGC
CAAGATCTTCTTCATCCTTCTCTTCGTGGTTGTCGTGGCGGCTGCAGTGG
CCATCTTCGCCATCTCCTACTTCAAGGATCGCAACGCGCGAAAACGTTTC
TACGCAAGCTTTCTAGACCAT

BO13325.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5510-RA 990 CG5510-PA 1..987 17..1003 4935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5510-RA 1362 CG5510-RA 109..1096 16..1003 4940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24168474..24168803 799..470 1650 100 Minus
3R 32079331 3R 24167941..24168144 1003..800 1020 100 Minus
3R 32079331 3R 24168857..24169055 469..271 995 100 Minus
3R 32079331 3R 24169314..24169454 156..16 705 100 Minus
3R 32079331 3R 24169131..24169248 271..154 590 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:08:47 has no hits.

BO13325.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:43 Download gff for BO13325.complete
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 1..990 17..1006 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:02 Download gff for BO13325.complete
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 104..1107 9..1016 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:18 Download gff for BO13325.complete
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 110..1096 17..1005 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:43 Download gff for BO13325.complete
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 104..1107 9..1016 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:43 Download gff for BO13325.complete
Subject Subject Range Query Range Percent Splice Strand
CG5510-RA 110..1096 17..1005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:43 Download gff for BO13325.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24167938..24168144 800..1005 99 <- Minus
3R 24168474..24168803 470..799 100 <- Minus
3R 24168857..24169054 272..469 100 <- Minus
3R 24169131..24169246 156..271 100 <- Minus
3R 24169315..24169453 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:18 Download gff for BO13325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19994579..19994776 272..469 100 <- Minus
arm_3R 19994196..19994525 470..799 100 <- Minus
arm_3R 19994853..19994968 156..271 100 <- Minus
arm_3R 19993660..19993866 800..1005 99 <- Minus
arm_3R 19995037..19995175 17..155 100   Minus

BO13325.pep Sequence

Translation from 16 to 1021

> BO13325.pep
MTKPTREHCSLALLALLVAPFVVLGEDMPREPDYMKREHSLVRPFQGVGV
ILPHWDFLGNTMVTSNYIRLTPDLQSKSGALWNYSPVMTRNWEVHVGFKV
HGKGTELFGDGFAIWYTKERMQTGPVFGSKDHFSGLAIILDTYSNHNGPH
NHQHPYLSAMVNNGSWSYDHDRDGTHTQLAGCEVRFRNVEYETLVSIRYE
NDILSVSTDLENRNEWKNCFVVANVELPTGYHFGMSATTGDLSDNHDIHS
FKFYDLDLNVNHDEIIRRSNIIPNAKTFEPPREHKEDPKPGMSNAKIFFI
LLFVVVVAAAVAIFAISYFKDRNARKRFYASFLDH

BO13325.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5510-PA 329 CG5510-PA 1..329 1..329 1780 100 Plus
ergic53-PB 512 CG6822-PB 53..252 52..251 404 39.7 Plus
ergic53-PA 512 CG6822-PA 53..252 52..251 404 39.7 Plus