Clone Sequence Records
BO13329.complete Sequence
1492 bp assembled on 2008-09-03
GenBank Submission: KX798992
> BO13329.complete
GAAGTTATCAGTCGACATGTTGCGGCAGTGTCTGGTGGGCGTGCTGCTAG
TTATAACTGGTGCTAATGGCCAGGGAAAGGAGAAAGAGGAGTTTCAATGC
CCCTCACACATTGCCAACGGTAACTACGCTGATCCGGCGACCTGTCGTCG
TTTTTACCAGTGCGTCGATGGATATCCGTATTTGAACCGCTGTCCATCCG
GACTTTTCTTCGATGATGTGCAGAAGTTCTGCACTTTCAAGGATGAGGCC
AAGTGCGGTCCTCTACCAACAACGCCTGCCCCTGCCACTGAGGCCCCGGC
AGATACCGCCCAGCGGTGCAACACGGAGAACTGCGCCCTGCCCTATTGCT
TCTGCTCCAAGGACGGCACCCAGATTCCCGGCGACCTGGAGCCCGAAAAA
ATCCCCCAAATTATTATGCTGACCTTCGATGGCGCTGTGAATTTGAACAA
CTACCAGCACTACCAAAAGATATTCGACGGCAAGCGCAAGAATCCCAACG
GCTGTCTGATTCGGGGCACCTTCTTCATGTCGCACGAGTACAGCAACTAC
CAGCAAATCCAGCACCTGGGATACTATGGACACGAAATCGGAACGGAGAG
CATCTCGCAGCAGCAAGGACTGCAGGATAAGGGCTACGAGGAGTGGGTGG
GCGAGATGATTGGCATGCGTGAAATCCTGCGACACTTCGCCAATGTGTCC
GTCAACGATGTGGTCGGCATGCGAGCTCCGTTCCTCAAACCTGGCCGCAA
CACCCAATACAAGGTGCTGGAGGACTTTGGGTACATCTATGACAGCTCGA
TCACCGTTCCACCGGTACCCGTGCCAGTGTGGCCGTACACCCTCGATTAC
AAGATCTCGCACGAGTGCAAGAGCGGCACCTGTCCGTCGCGCACTTTCCC
CGGCGTTTGGGAGGTTCCCCTGAACACACACTACGTGGAGGGCTATGAGG
GCGGTCACTGTCCCTATCTCGACCAGTGCGTCTTGCACAACCTAGACGAG
GAGGAGGTCTTTCAGTGGCTACAGGAGGACTTTTCGCGCTACTACGAACA
GAACAAGGCTCCATACATGATGCCCTTCCACACTAACTGGTTCCAGACCA
AGCCGCTGGAGAACGGCCTCCACAAATTCCTTGACTGGGCCCTCGAACTA
CCTGACGTCTACATCCTGACCGTTACCCAGATGCTCCAGTACGTGACCGA
CCCAAAGGAGCTTCGCGATGTCAGCCAAATTGAGTCGTGGAAGTGCGACA
AGAGCGTGTCTGTAGCCCCCAAGCCCTGCAATATCTGGCAGACGTGTGCG
CTGCCCTTCAAGATTCCCGAACAGAATCTGACGGATACGCGCTATATGGA
GACCTGTCGGGAATGCCCTAATGTGTATCCCTGGCTGGGCGATGCAGGCG
GTACGGGAATCGCGGGTCGCGATAACTATATCTTTGCCGGTGGCGAAAAT
CCAGAGGAAGAAGACTCTGCGAAGGCAAGCTTTCTAGACCAT
BO13329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-RA | 1461 | CG32499-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| verm-RG | 1578 | CG8756-PG | 475..693 | 332..550 | 270 | 74.9 | Plus |
| verm-RI | 1668 | CG8756-PI | 565..783 | 332..550 | 270 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-RA | 1934 | CG32499-RA | 147..1604 | 17..1474 | 7290 | 100 | Plus |
| verm-RG | 2165 | CG8756-RG | 589..807 | 332..550 | 270 | 74.9 | Plus |
| verm-RI | 2255 | CG8756-RI | 679..897 | 332..550 | 270 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22588465..22588856 | 1149..758 | 1945 | 99.7 | Minus |
| X | 23542271 | X | 22583964..22584288 | 1474..1150 | 1625 | 100 | Minus |
| X | 23542271 | X | 22590660..22590885 | 766..541 | 1130 | 100 | Minus |
| X | 23542271 | X | 22605246..22605388 | 543..401 | 715 | 100 | Minus |
| X | 23542271 | X | 22610802..22610929 | 400..273 | 640 | 100 | Minus |
| X | 23542271 | X | 22619624..22619739 | 272..157 | 580 | 100 | Minus |
| X | 23542271 | X | 22619823..22619915 | 160..68 | 465 | 100 | Minus |
| 3L | 28110227 | 3L | 19691391..19691609 | 550..332 | 270 | 74.9 | Minus |
| X | 23542271 | X | 22632512..22632564 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:34:28 has no hits.
BO13329.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:07 Download gff for
BO13329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-RA | 141..1603 | 12..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:17 Download gff for
BO13329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 152..1604 | 22..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:49 Download gff for
BO13329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-RA | 151..1603 | 22..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:12 Download gff for
BO13329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 152..1604 | 22..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:12 Download gff for
BO13329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22619624..22619735 | 161..272 | 100 | <- | Minus |
| X | 22610802..22610929 | 273..400 | 100 | <- | Minus |
| X | 22619823..22619914 | 69..160 | 100 | <- | Minus |
| X | 22632513..22632559 | 22..68 | 100 | | Minus |
| X | 22583962..22584288 | 1150..1476 | 99 | <- | Minus |
| X | 22588465..22588850 | 764..1149 | 100 | <- | Minus |
| X | 22590663..22590882 | 544..763 | 100 | <- | Minus |
| X | 22605246..22605388 | 401..543 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:17 Download gff for
BO13329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22021460..22021571 | 161..272 | 100 | <- | Minus |
| arm_X | 22021659..22021750 | 69..160 | 100 | <- | Minus |
| arm_X | 22034349..22034395 | 22..68 | 100 | | Minus |
| arm_X | 22012638..22012765 | 273..400 | 100 | <- | Minus |
| arm_X | 21985798..21986124 | 1150..1476 | 99 | <- | Minus |
| arm_X | 21990301..21990686 | 764..1149 | 100 | <- | Minus |
| arm_X | 21992499..21992718 | 544..763 | 100 | <- | Minus |
| arm_X | 22007082..22007224 | 401..543 | 100 | <- | Minus |
BO13329.3prime Sequence
757 bp (660 high quality bases) assembled on 2006-05-08
> BO13329.3prime
ATGGTCTAGAAAGCTTGCCTTCGCAGAGTCTTCTTCCTCTGGATTTTCGC
CACCGGCAAAGATATAGTTATCGCGACCCGCGATTCCCGTACCGCCTGCA
TCGCCCAGCCAGGGATACACATTAGGGCATTCCCGACAGGTCTCCATATA
GCGCGTATCCGTCAGATTCTGTTCGGGAATCTTGAAGGGCAGCGCACACG
TCTGCCAGATATTGCAGGGCTTGGGGGCTACAGACACGCTCTTGTCGCAC
TTCCACGACTCAATTTGGCTGACATCGCGAAGCTCCTTTGGGTCGGTCAC
GTACTGGAGCATCTGGGTAACGGTCAGGATGTAGACGTCAGGTAGTTCGA
GGGCCCAGTCAAGGAATTTGTGGAGGCCGTTCTCCAGCGGCTTGGTCTGG
AACCAGTTAGTGTGGAAGGGCATCATGTATGGAGCCTTGTTCTGTTCGTA
GTAGCGCGAAAAGTCCTCCTGTAGCCACTGAAAGACCTCCTCCTCGTCTA
GGTTGTGCAAGACGCACTGGTCGAGATAGGGACAGTGACCGCCCTCATAG
CCCTCCACGTAGTGTGTGTTCAGGGGAACCTCCCAAACGCCGGGGAAAGT
GCGCGACGGACAGGTGCCGCTCTTGCACTCGTGCGAGATCTTGTAATCGA
GGGTGTACGGCCACACTGGCACGGGTACCGGTGGAACGGTGATCGAGCTG
TCATAGATGTACCCAAAGTCCTCCAGCACCTTGTATTGGGTGTTGCGGCC
AGTTTGA
BO13329.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32499-PA | 1461 | CG32499-RA | 725..1458 | 752..19 | 3670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-RA | 1934 | CG32499-RA | 865..1604 | 757..19 | 3675 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22588465..22588856 | 344..735 | 1945 | 99.7 | Plus |
| X | 23542271 | X | 22583964..22584288 | 19..343 | 1625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:10:00 has no hits.
BO13329.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:42 Download gff for
BO13329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-PA | 720..1461 | 18..756 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:29 Download gff for
BO13329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-PA | 720..1461 | 18..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:58:01 Download gff for
BO13329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 866..1604 | 19..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:01 Download gff for
BO13329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 866..1604 | 19..756 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:01 Download gff for
BO13329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22583964..22584288 | 19..343 | 100 | <- | Plus |
| X | 22588465..22588850 | 344..729 | 100 | <- | Plus |
| X | 22590663..22590690 | 730..756 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:58:01 Download gff for
BO13329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21985800..21986124 | 19..343 | 100 | <- | Plus |
| arm_X | 21990301..21990686 | 344..729 | 100 | <- | Plus |
| arm_X | 21992499..21992526 | 730..756 | 96 | | Plus |
BO13329.5prime Sequence
633 bp (628 high quality bases) assembled on 2006-05-08
> BO13329.5prime
GAAGTTATCAGTCGACATGTTGCGGCAGTGTCTGGTGGGCGTGCTGCTAG
TTATAACTGGTGCTAATGGCCAGGGAAAGGAGAAAGAGGAGTTTCAATGC
CCCTCACACATTGCCAACGGTAACTACGCTGATCCGGCGACCTGTCGTCG
TTTTTACCAGTGCGTCGATGGATATCCGTATTTGAACCGCTGTCCATCCG
GACTTTTCTTCGATGATGTGCAGAAGTTCTGCACTTTCAAGGATGAGGCC
AAGTGCGGTCCTCTACCAACAACGCCTGCCCCTGCCACTGAGGCCCCGGC
AGATACCGCCCAGCGGTGCAACACGGAGAACTGCGCCCTGCCCTATTGCT
TCTGCTCCAAGGACGGCACCCAGATTCCCGGCGACCTGGAGCCCGAAAAA
ATCCCCCAAATTATTATGCTGACCTTCGATGGCGCTGTGAATTTGAACAA
CTACCAGCACTACCAAAAGATATTCGACGGCAAGCGCAAGAATCCCAACG
GCTGTCTGATTCGGGGCACCTTCTTCATGTCGCACGAGTACAGCAACTAC
CAGCAAATCCAGCACCTGGGATACTATGGACACGAAATCGGAACGGAGAG
CATCTCGCAGCAGCAAGGACTGCAGGATAAGGG
BO13329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32499-PA | 1461 | CG32499-RA | 1..617 | 17..633 | 3085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-RA | 1934 | CG32499-RA | 147..763 | 17..633 | 3085 | 100 | Plus |
| verm-RG | 2165 | CG8756-RG | 589..807 | 332..550 | 270 | 75.5 | Plus |
| verm-RI | 2255 | CG8756-RI | 679..897 | 332..550 | 270 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22605246..22605388 | 543..401 | 715 | 100 | Minus |
| X | 23542271 | X | 22610802..22610929 | 400..273 | 640 | 100 | Minus |
| X | 23542271 | X | 22619624..22619739 | 272..157 | 580 | 100 | Minus |
| X | 23542271 | X | 22590793..22590885 | 633..541 | 465 | 100 | Minus |
| X | 23542271 | X | 22619823..22619915 | 160..68 | 465 | 100 | Minus |
| 3L | 28110227 | 3L | 19691391..19691609 | 550..332 | 270 | 74.9 | Minus |
| X | 23542271 | X | 22632512..22632564 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:27:55 has no hits.
BO13329.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:43 Download gff for
BO13329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-PA | 1..617 | 17..633 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:30 Download gff for
BO13329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32499-PA | 1..617 | 17..633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:22 Download gff for
BO13329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 142..763 | 12..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:28 Download gff for
BO13329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cda4-RA | 142..763 | 12..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:28 Download gff for
BO13329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22590793..22590882 | 544..633 | 100 | <- | Minus |
| X | 22605246..22605388 | 401..543 | 100 | <- | Minus |
| X | 22610802..22610929 | 273..400 | 100 | <- | Minus |
| X | 22619624..22619735 | 161..272 | 100 | <- | Minus |
| X | 22619823..22619914 | 69..160 | 100 | <- | Minus |
| X | 22632513..22632569 | 12..68 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:22 Download gff for
BO13329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21992629..21992718 | 544..633 | 100 | <- | Minus |
| arm_X | 22007082..22007224 | 401..543 | 100 | <- | Minus |
| arm_X | 22012638..22012765 | 273..400 | 100 | <- | Minus |
| arm_X | 22021460..22021571 | 161..272 | 100 | <- | Minus |
| arm_X | 22021659..22021750 | 69..160 | 100 | <- | Minus |
| arm_X | 22034349..22034405 | 12..68 | 96 | | Minus |
BO13329.pep Sequence
Translation from 16 to 1492
> BO13329.pep
MLRQCLVGVLLVITGANGQGKEKEEFQCPSHIANGNYADPATCRRFYQCV
DGYPYLNRCPSGLFFDDVQKFCTFKDEAKCGPLPTTPAPATEAPADTAQR
CNTENCALPYCFCSKDGTQIPGDLEPEKIPQIIMLTFDGAVNLNNYQHYQ
KIFDGKRKNPNGCLIRGTFFMSHEYSNYQQIQHLGYYGHEIGTESISQQQ
GLQDKGYEEWVGEMIGMREILRHFANVSVNDVVGMRAPFLKPGRNTQYKV
LEDFGYIYDSSITVPPVPVPVWPYTLDYKISHECKSGTCPSRTFPGVWEV
PLNTHYVEGYEGGHCPYLDQCVLHNLDEEEVFQWLQEDFSRYYEQNKAPY
MMPFHTNWFQTKPLENGLHKFLDWALELPDVYILTVTQMLQYVTDPKELR
DVSQIESWKCDKSVSVAPKPCNIWQTCALPFKIPEQNLTDTRYMETCREC
PNVYPWLGDAGGTGIAGRDNYIFAGGENPEEEDSAKASFLDH
BO13329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cda4-PA | 486 | CG32499-PA | 1..486 | 1..486 | 2720 | 100 | Plus |
| ChLD3-PA | 577 | CG17905-PA | 111..575 | 43..462 | 823 | 35.9 | Plus |
| Cda5-PH | 891 | CG31973-PH | 492..876 | 60..461 | 770 | 40.3 | Plus |
| Cda5-PA | 1039 | CG31973-PA | 640..1024 | 60..461 | 770 | 40.3 | Plus |
| verm-PG | 525 | CG8756-PG | 50..524 | 43..466 | 748 | 34.2 | Plus |
