Clone Sequence Records
BO13330.3prime Sequence
743 bp (630 high quality bases) assembled on 2006-05-08
> BO13330.3prime
ATGGTCTAGAAAGCTTGCTTCGATCTTTCCGAAGGGGGCCTGTCCGTTTA
CGGGCACATAGAAGTCACCGTCGACCATGTAGGCGTTGGTAACAGCTCCC
ATGCGAACTCCACTGTAGGTGCTTCCGCACTCGTTGGCCAACGCAGCCTG
GTAGTCGTGACACTTGATCGTTCCAAAGTTATCCTCAGTGACTGCCTCCA
CGTAATACGTTACGGATCGTCCGTGGGCGCAGGTTCCTCCGATGTCTGAA
CCGCAACCTGGTTGATTTCTTCCTCCATTCGGATAGAAAGTGCCTTTGCC
AATGGGTTTTAGGAAACCCTTTTCACCCCCATTGGTCTGAATAGACTCGA
CATAGAAGGCATCTTCGGTGGACAGTCGCTTGTCAGGCTTATCGTAGGCA
AAAAGAGGCATGGCAGGATCCAGACCGACAATCGTGTGAACCCTTTTGCC
GCCCACCTGCTTTCCAGCATAGCCAGCCACATGGGCACCCAAACTGTGTC
CGATTACTTCCAGGCTCTCCATGGACAAATGATGGTGTTCATGCAGATAT
TCAATCATTTCTCCCACTTTGGCTCCAGCTCCAGGAACAGCTCGCACCGA
TGAGATATAGTCCACGGACTGGGCACGATCCCCAGTAACAACGATCACGT
TGTAATCTCCCTTCGAAAAGCCAGGCTCGGGTGATCTTGACGTTCATGCC
ATCAGTGTAACGACCATTCCACCCGTGGATTACAAAACGAGTA
BO13330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-PA | 1014 | CG17191-RA | 398..1011 | 632..19 | 3070 | 100 | Minus |
| CG17191-PA | 1014 | CG17191-RA | 288..364 | 743..667 | 335 | 97.4 | Minus |
| CG6271-PA | 1026 | CG6271-RA | 934..992 | 108..50 | 245 | 96.6 | Minus |
| CG6277-PA | 1026 | CG6277-RA | 934..996 | 108..46 | 215 | 93.6 | Minus |
| CG6283-PA | 1020 | CG6283-RA | 928..986 | 108..50 | 195 | 93.2 | Minus |
| CG17192-PA | 1014 | CG17192-RA | 436..476 | 594..554 | 155 | 95.1 | Minus |
| CG17192-PA | 1014 | CG17192-RA | 663..701 | 367..329 | 145 | 94.8 | Minus |
| CG17192-PA | 1014 | CG17192-RA | 529..572 | 501..458 | 145 | 93.1 | Minus |
| CG17191-PA | 1014 | CG17191-RA | 362..394 | 668..636 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-RA | 1090 | CG17191-RA | 312..1035 | 743..19 | 3510 | 99.2 | Minus |
| CG17192-RA | 1052 | CG17192-RA | 297..1006 | 739..29 | 1040 | 76.9 | Minus |
| CG6283-RA | 1083 | CG6283-RA | 386..1038 | 676..23 | 860 | 76.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27018663..27019386 | 19..743 | 3485 | 99 | Plus |
| 3R | 32079331 | 3R | 27017226..27017935 | 29..739 | 1000 | 76.4 | Plus |
| 3R | 32079331 | 3R | 27020283..27020923 | 23..663 | 835 | 75.4 | Plus |
| 3R | 32079331 | 3R | 27025006..27025472 | 29..498 | 560 | 75.1 | Plus |
| 3R | 32079331 | 3R | 27022113..27022579 | 29..498 | 515 | 74.5 | Plus |
| 3R | 32079331 | 3R | 27005982..27006358 | 50..426 | 190 | 70 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:33:42 has no hits.
BO13330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:44 Download gff for
BO13330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-PA | 289..1014 | 18..742 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:32 Download gff for
BO13330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-PA | 289..1014 | 18..742 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:31 Download gff for
BO13330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 313..1035 | 19..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:18 Download gff for
BO13330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 313..1035 | 19..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:18 Download gff for
BO13330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27018663..27019385 | 19..742 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:31 Download gff for
BO13330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22844385..22845107 | 19..742 | 99 | | Plus |
BO13330.5prime Sequence
704 bp (584 high quality bases) assembled on 2006-05-08
> BO13330.5prime
GAAGTTATCAGTCGACATGAGAGTGTTCATAGCTCTAGCGGCTTTGTTGG
CAACAGTAAGTGCTCTTCCCATTGAGGAACGTGTCAATGGTGAAAATGGT
TGGTATGTGCCTCAGATAGACGGCAGTTTCGAGTGGATGGACAAACAGGA
TGCCGAGGAGCTCTTAAATAGAAATTCACTCATCGAAACACGTTCCAATG
ACGTGTCCTTTTACCTGTACACCAAACATAACCCAACCGTGGGAAAGGAA
ATCAGGGCTGATGCTTCATCAATCGAAGACTCTCATTTCGATAAGAACCA
GGGTACTCGTTTCGTAATCCACGGGTGGAATGGTCGCTACACTGATGGCA
TGAACGTCAAGATCACCCGAGCCTGGCTTTCGAAGGGAGACTACAACGTG
ATCGTTGTTAACTGGGATCGTGCCCAGTCCGTGGACTATATCTCATCGGT
GCGAGCTGTTCCTGGAGCTGGAGCCAAAGTGGGAGAAATGATTGAATATC
TGCATGAACACCATCATTTGTCCATGGAGAGCCTGGAAGTAATCGGACAC
AGTTTGGGTGCCCATGTGGCTGGCTATGCTGGAAAGCAGGTGGGCGGCAA
AAGGGTTCACACGATTGTCGGTCTGGATCCTGCCATGCCTCTTTTTGCCT
ACGATAAGCCTGACAAGCGACTGTCCACCAAAGATGCCTTCTATGTCGAG
TCTA
BO13330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-PA | 1014 | CG17191-RA | 1..688 | 17..704 | 3415 | 99.8 | Plus |
| CG17192-PA | 1014 | CG17192-RA | 436..476 | 452..492 | 155 | 95.1 | Plus |
| CG17192-PA | 1014 | CG17192-RA | 529..572 | 545..588 | 145 | 93.1 | Plus |
| CG6271-PA | 1026 | CG6271-RA | 382..415 | 383..416 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-RA | 1090 | CG17191-RA | 25..712 | 17..704 | 3425 | 99.9 | Plus |
| CG17192-RA | 1052 | CG17192-RA | 50..691 | 61..702 | 1095 | 78.6 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 386..717 | 371..702 | 460 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27018986..27019635 | 704..55 | 3235 | 99.8 | Minus |
| 3R | 32079331 | 3R | 27017541..27018182 | 702..61 | 1080 | 77.9 | Minus |
| 3R | 32079331 | 3R | 27020604..27020935 | 702..371 | 460 | 75.9 | Minus |
| 3R | 32079331 | 3R | 27021153..27021257 | 159..55 | 210 | 80 | Minus |
| 3R | 32079331 | 3R | 27019688..27019727 | 56..17 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 27025581..27025637 | 439..383 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:36:00 has no hits.
BO13330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:45 Download gff for
BO13330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:33 Download gff for
BO13330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:04:06 Download gff for
BO13330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..711 | 7..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:45 Download gff for
BO13330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..711 | 7..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:45 Download gff for
BO13330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27018987..27019633 | 57..703 | 99 | <- | Minus |
| 3R | 27019688..27019735 | 7..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:04:06 Download gff for
BO13330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22844709..22845355 | 57..703 | 99 | <- | Minus |
| arm_3R | 22845410..22845457 | 7..56 | 92 | | Minus |
BO13330.complete Sequence
1045 bp assembled on 2006-10-11
GenBank Submission: FJ632758
> BO13330.complete
GAAGTTATCAGTCGACATGAGAGTGTTCATAGCTCTAGCGGCTTTGTTGG
CAACAGTAAGTGCTCTTCCCATTGAGGAACGTGTCAATGGTGAAAATGGT
TGGTATGTGCCTCAGATAGACGGCAGTTTCGAGTGGATGGACAAACAGGA
TGCCGAGGAGCTCTTAAATAGAAATTCACTCATCGAAACACGTTCCAATG
ACGTGTCCTTTTACCTGTACACCAAACATAACCCAACCGTGGGAAAGGAA
ATCAGGGCTGATGCTTCATCAATCGAAGACTCTCATTTCGATAAGAACCA
GGGTACTCGTTTCGTAATCCACGGGTGGAATGGTCGCTACACTGATGGCA
TGAACGTCAAGATCACCCGAGCCTGGCTTTCGAAGGGAGACTACAACGTG
ATCGTTGTTAACTGGGATCGTGCCCAGTCCGTGGACTATATCTCATCGGT
GCGAGCTGTTCCTGGAGCTGGAGCCAAAGTGGGAGAAATGATTGAATATC
TGCATGAACACCATCATTTGTCCATGGAGAGCCTGGAAGTAATCGGACAC
AGTTTGGGTGCCCATGTGGCTGGCTATGCTGGAAAGCAGGTGGGCGGCAA
AAGGGTTCACACGATTGTCGGTCTGGATCCTGCCATGCCTCTTTTTGCCT
ACGATAAGCCTGACAAGCGACTGTCCACCGAAGATGCCTTCTATGTCGAG
TCTATTCAGACCAATGGGGGTGAAAAGGGTTTCCTAAAACCCATTGGCAA
AGGCACTTTCTATCCGAATGGAGGAAGAAATCAACCAGGTTGCGGTTCAG
ACATCGGAGGAACCTGCGCCCACGGACGATCCGTAACGTATTACGTGGAG
GCAGTCACTGAGGATAACTTTGGAACGATCAAGTGTCACGACTACCAGGC
TGCGTTGGCCAACGAGTGCGGAAGCACCTACAGTGGAGTTCGCATGGGAG
CTGTTACCAACGCCTACATGGTCGACGGTGACTTCTATGTGCCCGTAAAC
GGACAGGCCCCCTTCGGAAAGATCGAAGCAAGCTTTCTAGACCAT
BO13330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-RA | 1014 | CG17191-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
| CG17192-RA | 1014 | CG17192-PA | 45..1001 | 61..1017 | 1440 | 76.7 | Plus |
| CG6283-RA | 1020 | CG6283-PA | 361..1013 | 371..1023 | 910 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-RA | 1090 | CG17191-RA | 25..1035 | 17..1027 | 5055 | 100 | Plus |
| CG17192-RA | 1052 | CG17192-RA | 50..1006 | 61..1017 | 1440 | 76.7 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 386..1038 | 371..1023 | 910 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27018663..27019635 | 1027..55 | 4865 | 100 | Minus |
| 3R | 32079331 | 3R | 27017226..27018182 | 1017..61 | 1440 | 76.7 | Minus |
| 3R | 32079331 | 3R | 27020283..27020935 | 1023..371 | 910 | 76 | Minus |
| 3R | 32079331 | 3R | 27025006..27025472 | 1017..548 | 560 | 75.1 | Minus |
| 3R | 32079331 | 3R | 27022113..27022579 | 1017..548 | 515 | 74.5 | Minus |
| 3R | 32079331 | 3R | 27021153..27021257 | 159..55 | 210 | 80 | Minus |
| 3R | 32079331 | 3R | 27019688..27019727 | 56..17 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 27025581..27025637 | 439..383 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:58:32 has no hits.
BO13330.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:46 Download gff for
BO13330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 1..1014 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:06 Download gff for
BO13330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..1035 | 7..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:10 Download gff for
BO13330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 25..1035 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:46 Download gff for
BO13330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..1035 | 7..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:32 Download gff for
BO13330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 25..1035 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:32 Download gff for
BO13330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27018661..27019633 | 57..1029 | 99 | <- | Minus |
| 3R | 27019688..27019727 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:10 Download gff for
BO13330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22844383..22845355 | 57..1029 | 99 | <- | Minus |
| arm_3R | 22845410..22845449 | 17..56 | 100 | | Minus |
BO13330.pep Sequence
Translation from 16 to 1045
> BO13330.pep
MRVFIALAALLATVSALPIEERVNGENGWYVPQIDGSFEWMDKQDAEELL
NRNSLIETRSNDVSFYLYTKHNPTVGKEIRADASSIEDSHFDKNQGTRFV
IHGWNGRYTDGMNVKITRAWLSKGDYNVIVVNWDRAQSVDYISSVRAVPG
AGAKVGEMIEYLHEHHHLSMESLEVIGHSLGAHVAGYAGKQVGGKRVHTI
VGLDPAMPLFAYDKPDKRLSTEDAFYVESIQTNGGEKGFLKPIGKGTFYP
NGGRNQPGCGSDIGGTCAHGRSVTYYVEAVTEDNFGTIKCHDYQAALANE
CGSTYSGVRMGAVTNAYMVDGDFYVPVNGQAPFGKIEASFLDH
BO13330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-PA | 337 | CG17191-PA | 1..337 | 1..337 | 1800 | 100 | Plus |
| CG6283-PA | 339 | CG6283-PA | 1..339 | 1..337 | 1399 | 75.5 | Plus |
| CG17192-PA | 337 | CG17192-PA | 1..337 | 1..337 | 1358 | 73.9 | Plus |
| CG6277-PA | 341 | CG6277-PA | 1..340 | 1..336 | 1128 | 62.5 | Plus |
| CG6271-PA | 341 | CG6271-PA | 1..340 | 1..336 | 1107 | 62.5 | Plus |
