Clone Sequence Records
BO13332.5prime Sequence
605 bp (604 high quality bases) assembled on 2006-05-08
> BO13332.5prime
GAAGTTATCAGTCGACATGTCGAAACCAATTACCTTTGTCACCGGCAACG
CCAAGAAGCTGGAAGAGTTGGTTGCCATCCTGGGACCCAGTTTCCCGCGC
ACCATTGTGTCAAAGAAGATTGATCTTCCGGAATTGCAAGGCGACATCGA
CGAGATTGCCATCAAGAAGTGCAAGGAGGCAGCGCGTCAGGTGAATGGAC
CCGTGCTGGTGGAGGACACTAGTCTGTGCTTCAATGCGCTGGAGGGCTTG
CCGGGTCCGTACATCAAATGGTTCCTGGAGAAGCTGCAGCCGGAGGGGTT
ACACCGTCTGCTCCATGGTTGGGAGAACAAAAGCGCTCAGGCTATTTGCA
CCTTTGGCTACTGCGACGGTGTGGATGCCGAGCCTCTAATCTTTAAGGGC
ATCACCGAGGGCGTTATCGTCGAACCTCGCGGCCCCCGGGACTTTGGATG
GGATCCGGTTTTCCAGCCCAGTGGCTACGATAAGACCTACGCCGAACTGC
CCAAGTCCGAGAAGAACACCATTTCCCATCGCTACCGCGCTTTAGCTCTA
CTGCGGCAGCACTTCGAGAAACAGGACAAGTTAATAAACGCAAGCTTTCT
AGACC
BO13332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8891-PA | 576 | CG8891-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8891-RA | 769 | CG8891-RA | 111..684 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4978775..4979087 | 451..139 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 4978569..4978708 | 589..450 | 700 | 100 | Minus |
2L | 23513712 | 2L | 4979144..4979269 | 141..16 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:06:30 has no hits.
BO13332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:48 Download gff for
BO13332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-PA | 1..576 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:37 Download gff for
BO13332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-PA | 1..576 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:36 Download gff for
BO13332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-RA | 100..684 | 7..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:36:47 Download gff for
BO13332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-RA | 100..684 | 7..589 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:36:47 Download gff for
BO13332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4978569..4978707 | 451..589 | 100 | <- | Minus |
2L | 4978776..4979085 | 141..450 | 100 | <- | Minus |
2L | 4979145..4979280 | 7..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:36 Download gff for
BO13332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4979145..4979280 | 7..140 | 97 | | Minus |
arm_2L | 4978569..4978707 | 451..589 | 100 | <- | Minus |
arm_2L | 4978776..4979085 | 141..450 | 100 | <- | Minus |
BO13332.complete Sequence
607 bp assembled on 2006-10-11
GenBank Submission: FJ632759
> BO13332.complete
GAAGTTATCAGTCGACATGTCGAAACCAATTACCTTTGTCACCGGCAACG
CCAAGAAGCTGGAAGAGTTGGTTGCCATCCTGGGACCCAGTTTCCCGCGC
ACCATTGTGTCAAAGAAGATTGATCTTCCGGAATTGCAAGGCGACATCGA
CGAGATTGCCATCAAGAAGTGCAAGGAGGCAGCGCGTCAGGTGAATGGAC
CCGTGCTGGTGGAGGACACTAGTCTGTGCTTCAATGCGCTGGAGGGCTTG
CCGGGTCCGTACATCAAATGGTTCCTGGAGAAGCTGCAGCCGGAGGGGTT
ACACCGTCTGCTCCATGGTTGGGAGAACAAAAGCGCTCAGGCTATTTGCA
CCTTTGGCTACTGCGACGGTGTGGATGCCGAGCCTCTAATCTTTAAGGGC
ATCACCGAGGGCGTTATCGTCGAACCTCGCGGCCCCCGGGACTTTGGATG
GGATCCGGTTTTCCAGCCCAGTGGCTACGATAAGACCTACGCCGAACTGC
CCAAGTCCGAGAAGAACACCATTTCCCATCGCTACCGCGCTTTAGCTCTA
CTGCGGCAGCACTTCGAGAAACAGGACAAGTTAATAAACGCAAGCTTTCT
AGACCAT
BO13332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8891-RA | 576 | CG8891-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8891-RA | 769 | CG8891-RA | 111..684 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4978775..4979087 | 451..139 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 4978569..4978708 | 589..450 | 700 | 100 | Minus |
2L | 23513712 | 2L | 4979144..4979269 | 141..16 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:05:06 has no hits.
BO13332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:15 Download gff for
BO13332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-RA | 1..576 | 17..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:23 Download gff for
BO13332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-RA | 98..682 | 7..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:51 Download gff for
BO13332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-RA | 112..684 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:15 Download gff for
BO13332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-RA | 98..682 | 7..589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:33 Download gff for
BO13332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8891-RA | 112..684 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:33 Download gff for
BO13332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4978567..4978707 | 451..591 | 98 | <- | Minus |
2L | 4978776..4979085 | 141..450 | 100 | <- | Minus |
2L | 4979145..4979268 | 17..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:51 Download gff for
BO13332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4978567..4978707 | 451..591 | 98 | <- | Minus |
arm_2L | 4978776..4979085 | 141..450 | 100 | <- | Minus |
arm_2L | 4979145..4979268 | 17..140 | 100 | | Minus |
BO13332.pep Sequence
Translation from 16 to 607
> BO13332.pep
MSKPITFVTGNAKKLEELVAILGPSFPRTIVSKKIDLPELQGDIDEIAIK
KCKEAARQVNGPVLVEDTSLCFNALEGLPGPYIKWFLEKLQPEGLHRLLH
GWENKSAQAICTFGYCDGVDAEPLIFKGITEGVIVEPRGPRDFGWDPVFQ
PSGYDKTYAELPKSEKNTISHRYRALALLRQHFEKQDKLINASFLDH
BO13332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8891-PA | 191 | CG8891-PA | 1..191 | 1..191 | 1015 | 100 | Plus |