Clone BO13332 Report

Search the DGRC for BO13332

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG8891-RA
Protein status:BO13332.pep: validated full length
Sequenced Size:607

Clone Sequence Records

BO13332.5prime Sequence

605 bp (604 high quality bases) assembled on 2006-05-08

> BO13332.5prime
GAAGTTATCAGTCGACATGTCGAAACCAATTACCTTTGTCACCGGCAACG
CCAAGAAGCTGGAAGAGTTGGTTGCCATCCTGGGACCCAGTTTCCCGCGC
ACCATTGTGTCAAAGAAGATTGATCTTCCGGAATTGCAAGGCGACATCGA
CGAGATTGCCATCAAGAAGTGCAAGGAGGCAGCGCGTCAGGTGAATGGAC
CCGTGCTGGTGGAGGACACTAGTCTGTGCTTCAATGCGCTGGAGGGCTTG
CCGGGTCCGTACATCAAATGGTTCCTGGAGAAGCTGCAGCCGGAGGGGTT
ACACCGTCTGCTCCATGGTTGGGAGAACAAAAGCGCTCAGGCTATTTGCA
CCTTTGGCTACTGCGACGGTGTGGATGCCGAGCCTCTAATCTTTAAGGGC
ATCACCGAGGGCGTTATCGTCGAACCTCGCGGCCCCCGGGACTTTGGATG
GGATCCGGTTTTCCAGCCCAGTGGCTACGATAAGACCTACGCCGAACTGC
CCAAGTCCGAGAAGAACACCATTTCCCATCGCTACCGCGCTTTAGCTCTA
CTGCGGCAGCACTTCGAGAAACAGGACAAGTTAATAAACGCAAGCTTTCT
AGACC

BO13332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8891-PA 576 CG8891-RA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8891-RA 769 CG8891-RA 111..684 16..589 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4978775..4979087 451..139 1565 100 Minus
2L 23513712 2L 4978569..4978708 589..450 700 100 Minus
2L 23513712 2L 4979144..4979269 141..16 630 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:06:30 has no hits.

BO13332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:00:48 Download gff for BO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8891-PA 1..576 17..590 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:37 Download gff for BO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8891-PA 1..576 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:07:36 Download gff for BO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8891-RA 100..684 7..589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:36:47 Download gff for BO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8891-RA 100..684 7..589 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:36:47 Download gff for BO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4978569..4978707 451..589 100 <- Minus
2L 4978776..4979085 141..450 100 <- Minus
2L 4979145..4979280 7..140 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:07:36 Download gff for BO13332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4979145..4979280 7..140 97   Minus
arm_2L 4978569..4978707 451..589 100 <- Minus
arm_2L 4978776..4979085 141..450 100 <- Minus

BO13332.complete Sequence

607 bp assembled on 2006-10-11

GenBank Submission: FJ632759

> BO13332.complete
GAAGTTATCAGTCGACATGTCGAAACCAATTACCTTTGTCACCGGCAACG
CCAAGAAGCTGGAAGAGTTGGTTGCCATCCTGGGACCCAGTTTCCCGCGC
ACCATTGTGTCAAAGAAGATTGATCTTCCGGAATTGCAAGGCGACATCGA
CGAGATTGCCATCAAGAAGTGCAAGGAGGCAGCGCGTCAGGTGAATGGAC
CCGTGCTGGTGGAGGACACTAGTCTGTGCTTCAATGCGCTGGAGGGCTTG
CCGGGTCCGTACATCAAATGGTTCCTGGAGAAGCTGCAGCCGGAGGGGTT
ACACCGTCTGCTCCATGGTTGGGAGAACAAAAGCGCTCAGGCTATTTGCA
CCTTTGGCTACTGCGACGGTGTGGATGCCGAGCCTCTAATCTTTAAGGGC
ATCACCGAGGGCGTTATCGTCGAACCTCGCGGCCCCCGGGACTTTGGATG
GGATCCGGTTTTCCAGCCCAGTGGCTACGATAAGACCTACGCCGAACTGC
CCAAGTCCGAGAAGAACACCATTTCCCATCGCTACCGCGCTTTAGCTCTA
CTGCGGCAGCACTTCGAGAAACAGGACAAGTTAATAAACGCAAGCTTTCT
AGACCAT

BO13332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8891-RA 576 CG8891-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8891-RA 769 CG8891-RA 111..684 16..589 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4978775..4979087 451..139 1565 100 Minus
2L 23513712 2L 4978569..4978708 589..450 700 100 Minus
2L 23513712 2L 4979144..4979269 141..16 630 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:05:06 has no hits.

BO13332.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:15 Download gff for BO13332.complete
Subject Subject Range Query Range Percent Splice Strand
CG8891-RA 1..576 17..590 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:23 Download gff for BO13332.complete
Subject Subject Range Query Range Percent Splice Strand
CG8891-RA 98..682 7..589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:51 Download gff for BO13332.complete
Subject Subject Range Query Range Percent Splice Strand
CG8891-RA 112..684 17..591 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:15 Download gff for BO13332.complete
Subject Subject Range Query Range Percent Splice Strand
CG8891-RA 98..682 7..589 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:33 Download gff for BO13332.complete
Subject Subject Range Query Range Percent Splice Strand
CG8891-RA 112..684 17..591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:33 Download gff for BO13332.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4978567..4978707 451..591 98 <- Minus
2L 4978776..4979085 141..450 100 <- Minus
2L 4979145..4979268 17..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:51 Download gff for BO13332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4978567..4978707 451..591 98 <- Minus
arm_2L 4978776..4979085 141..450 100 <- Minus
arm_2L 4979145..4979268 17..140 100   Minus

BO13332.pep Sequence

Translation from 16 to 607

> BO13332.pep
MSKPITFVTGNAKKLEELVAILGPSFPRTIVSKKIDLPELQGDIDEIAIK
KCKEAARQVNGPVLVEDTSLCFNALEGLPGPYIKWFLEKLQPEGLHRLLH
GWENKSAQAICTFGYCDGVDAEPLIFKGITEGVIVEPRGPRDFGWDPVFQ
PSGYDKTYAELPKSEKNTISHRYRALALLRQHFEKQDKLINASFLDH

BO13332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8891-PA 191 CG8891-PA 1..191 1..191 1015 100 Plus