Clone Sequence Records
BO13341.5prime Sequence
386 bp (385 high quality bases) assembled on 2006-05-08
> BO13341.5prime
GAAGTTATCAGTCGACATGGCGAGCTCCGTAATTCTGGCGGGTCTTAGCG
TGGCCGCCGTGGGATTCGCCGGAAAGCACCTGATGCGCCGCATGCCCCAG
ATGACCACCAAATTCAACGAGGCCCTCAAGAACCTGCCCAAATACGATGC
GGAGAGCATGGCCGCCTCCAAATACTACAAGGGCGGCTTCGATCCCAAGA
TGAACAAGCGGGAGGCGTCCCTAATCCTAGGTGTCAGCCCCAGTGCGTCC
AAGATAAAGATTAAGGACGCGCACAAGAAGATCATGCTGTTGAACCATCC
GGATCGAGGAGGATCTCCCTATTTGGCGGCCAAGATCAACGAGGCCAAAG
ACTTTCTGGACAAAGCGAAGGCAAGCTTTCTAGACC
BO13341.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7394-PA | 357 | CG7394-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7394-RC | 1315 | CG7394-RC | 63..416 | 17..370 | 1770 | 100 | Plus |
CG7394-RD | 1431 | CG7394-RD | 179..532 | 17..370 | 1770 | 100 | Plus |
CG7394-RA | 534 | CG7394-RA | 63..416 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11562860..11563100 | 19..259 | 1205 | 100 | Plus |
3L | 28110227 | 3L | 11563301..11563413 | 258..370 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:40:03 has no hits.
BO13341.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:03 Download gff for
BO13341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-PA | 1..357 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:59 Download gff for
BO13341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-PA | 1..357 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:39 Download gff for
BO13341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 56..416 | 9..370 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:12 Download gff for
BO13341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 56..416 | 9..370 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:12 Download gff for
BO13341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11562861..11563100 | 20..259 | 100 | -> | Plus |
3L | 11563303..11563413 | 260..370 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:39 Download gff for
BO13341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11555961..11556200 | 20..259 | 100 | -> | Plus |
arm_3L | 11556403..11556513 | 260..370 | 100 | | Plus |
BO13341.3prime Sequence
386 bp (385 high quality bases) assembled on 2006-05-08
> BO13341.3prime
ATGGTCTAGAAAGCTTGCCTTCGCTTTGTCCAGAAAGTCTTTGGCCTCGT
TGATCTTGGCCGCCAAATAGGGAGATCCTCCTCGATCCGGATGGTTCAAC
AGCATGATCTTCTTGTGCGCGTCCTTAATCTTTATCTTGGACGCACTGGG
GCTGACACCTAGGATTAGGGACGCCTCCCGCTTGTTCATCTTGGGATCGA
AGCCGCCCTTGTAGTATTTGGAGGCGGCCATGCTCTCCGCATCGTATTTG
GGCAGGTTCTTGAGGGCCTCGTTGAATTTGGTGGTCATCTGGGGCATGCG
GCGCATCAGGTGCTTTCCGGCGAATCCCACGGCGGCCACGCTAAGACCCG
CCAGAATTACTGAGCTCGCCATGTCGACTGATAACT
BO13341.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7394-PA | 357 | CG7394-RA | 1..354 | 372..19 | 1745 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7394-RC | 1315 | CG7394-RC | 63..416 | 372..19 | 1755 | 99.7 | Minus |
CG7394-RD | 1431 | CG7394-RD | 179..532 | 372..19 | 1755 | 99.7 | Minus |
CG7394-RA | 534 | CG7394-RA | 63..416 | 372..19 | 1755 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11562860..11563100 | 370..130 | 1190 | 99.6 | Minus |
3L | 28110227 | 3L | 11563301..11563413 | 131..19 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:22:10 has no hits.
BO13341.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:02 Download gff for
BO13341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-PA | 1..357 | 18..372 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:57 Download gff for
BO13341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-PA | 1..357 | 18..372 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:43 Download gff for
BO13341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 56..416 | 19..380 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:17 Download gff for
BO13341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 56..416 | 19..380 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:17 Download gff for
BO13341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11562861..11563100 | 130..369 | 99 | -> | Minus |
3L | 11563303..11563413 | 19..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:43 Download gff for
BO13341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11555961..11556200 | 130..369 | 99 | -> | Minus |
arm_3L | 11556403..11556513 | 19..129 | 100 | | Minus |
BO13341.complete Sequence
388 bp assembled on 2006-10-11
GenBank Submission: FJ632760
> BO13341.complete
GAAGTTATCAGTCGACATGGCGAGCTCCGTAATTCTGGCGGGTCTTAGCG
TGGCCGCCGTGGGATTCGCCGGAAAGCACCTGATGCGCCGCATGCCCCAG
ATGACCACCAAATTCAACGAGGCCCTCAAGAACCTGCCCAAATACGATGC
GGAGAGCATGGCCGCCTCCAAATACTACAAGGGCGGCTTCGATCCCAAGA
TGAACAAGCGGGAGGCGTCCCTAATCCTAGGTGTCAGCCCCAGTGCGTCC
AAGATAAAGATTAAGGACGCGCACAAGAAGATCATGCTGTTGAACCATCC
GGATCGAGGAGGATCTCCCTATTTGGCGGCCAAGATCAACGAGGCCAAAG
ACTTTCTGGACAAAGCGAAGGCAAGCTTTCTAGACCAT
BO13341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7394-RC | 357 | CG7394-PC | 1..354 | 17..370 | 1770 | 100 | Plus |
CG7394-RD | 357 | CG7394-PD | 1..354 | 17..370 | 1770 | 100 | Plus |
CG7394-RA | 357 | CG7394-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7394-RC | 1315 | CG7394-RC | 63..416 | 17..370 | 1770 | 100 | Plus |
CG7394-RD | 1431 | CG7394-RD | 179..532 | 17..370 | 1770 | 100 | Plus |
CG7394-RA | 534 | CG7394-RA | 63..416 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11562860..11563100 | 19..259 | 1205 | 100 | Plus |
3L | 28110227 | 3L | 11563301..11563413 | 258..370 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:18:57 has no hits.
BO13341.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:47 Download gff for
BO13341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 1..357 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:07 Download gff for
BO13341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 50..410 | 9..370 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:01 Download gff for
BO13341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 63..416 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:47 Download gff for
BO13341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 50..410 | 9..370 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:41 Download gff for
BO13341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7394-RA | 63..416 | 17..372 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:41 Download gff for
BO13341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11562858..11563100 | 17..259 | 99 | -> | Plus |
3L | 11563303..11563413 | 260..372 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:01 Download gff for
BO13341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11555958..11556200 | 17..259 | 99 | -> | Plus |
arm_3L | 11556403..11556513 | 260..372 | 98 | | Plus |
BO13341.pep Sequence
Translation from 16 to 388
> BO13341.pep
MASSVILAGLSVAAVGFAGKHLMRRMPQMTTKFNEALKNLPKYDAESMAA
SKYYKGGFDPKMNKREASLILGVSPSASKIKIKDAHKKIMLLNHPDRGGS
PYLAAKINEAKDFLDKAKASFLDH
BO13341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7394-PC | 118 | CG7394-PC | 1..118 | 1..118 | 595 | 100 | Plus |
CG7394-PD | 118 | CG7394-PD | 1..118 | 1..118 | 595 | 100 | Plus |
CG7394-PA | 118 | CG7394-PA | 1..118 | 1..118 | 595 | 100 | Plus |
CG7394-PB | 128 | CG7394-PB | 12..128 | 2..118 | 590 | 100 | Plus |
CG32727-PA | 122 | CG32727-PA | 53..121 | 47..121 | 144 | 41.3 | Plus |