Clone BO13341 Report

Search the DGRC for BO13341

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG7394-RA
Protein status:BO13341.pep: validated full length
Sequenced Size:388

Clone Sequence Records

BO13341.5prime Sequence

386 bp (385 high quality bases) assembled on 2006-05-08

> BO13341.5prime
GAAGTTATCAGTCGACATGGCGAGCTCCGTAATTCTGGCGGGTCTTAGCG
TGGCCGCCGTGGGATTCGCCGGAAAGCACCTGATGCGCCGCATGCCCCAG
ATGACCACCAAATTCAACGAGGCCCTCAAGAACCTGCCCAAATACGATGC
GGAGAGCATGGCCGCCTCCAAATACTACAAGGGCGGCTTCGATCCCAAGA
TGAACAAGCGGGAGGCGTCCCTAATCCTAGGTGTCAGCCCCAGTGCGTCC
AAGATAAAGATTAAGGACGCGCACAAGAAGATCATGCTGTTGAACCATCC
GGATCGAGGAGGATCTCCCTATTTGGCGGCCAAGATCAACGAGGCCAAAG
ACTTTCTGGACAAAGCGAAGGCAAGCTTTCTAGACC

BO13341.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7394-PA 357 CG7394-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7394-RC 1315 CG7394-RC 63..416 17..370 1770 100 Plus
CG7394-RD 1431 CG7394-RD 179..532 17..370 1770 100 Plus
CG7394-RA 534 CG7394-RA 63..416 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11562860..11563100 19..259 1205 100 Plus
3L 28110227 3L 11563301..11563413 258..370 565 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:40:03 has no hits.

BO13341.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:03 Download gff for BO13341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-PA 1..357 17..371 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:59 Download gff for BO13341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-PA 1..357 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:39 Download gff for BO13341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 56..416 9..370 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:12 Download gff for BO13341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 56..416 9..370 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:12 Download gff for BO13341.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11562861..11563100 20..259 100 -> Plus
3L 11563303..11563413 260..370 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:39 Download gff for BO13341.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11555961..11556200 20..259 100 -> Plus
arm_3L 11556403..11556513 260..370 100   Plus

BO13341.3prime Sequence

386 bp (385 high quality bases) assembled on 2006-05-08

> BO13341.3prime
ATGGTCTAGAAAGCTTGCCTTCGCTTTGTCCAGAAAGTCTTTGGCCTCGT
TGATCTTGGCCGCCAAATAGGGAGATCCTCCTCGATCCGGATGGTTCAAC
AGCATGATCTTCTTGTGCGCGTCCTTAATCTTTATCTTGGACGCACTGGG
GCTGACACCTAGGATTAGGGACGCCTCCCGCTTGTTCATCTTGGGATCGA
AGCCGCCCTTGTAGTATTTGGAGGCGGCCATGCTCTCCGCATCGTATTTG
GGCAGGTTCTTGAGGGCCTCGTTGAATTTGGTGGTCATCTGGGGCATGCG
GCGCATCAGGTGCTTTCCGGCGAATCCCACGGCGGCCACGCTAAGACCCG
CCAGAATTACTGAGCTCGCCATGTCGACTGATAACT

BO13341.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7394-PA 357 CG7394-RA 1..354 372..19 1745 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7394-RC 1315 CG7394-RC 63..416 372..19 1755 99.7 Minus
CG7394-RD 1431 CG7394-RD 179..532 372..19 1755 99.7 Minus
CG7394-RA 534 CG7394-RA 63..416 372..19 1755 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11562860..11563100 370..130 1190 99.6 Minus
3L 28110227 3L 11563301..11563413 131..19 565 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:22:10 has no hits.

BO13341.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:02 Download gff for BO13341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-PA 1..357 18..372 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:45:57 Download gff for BO13341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-PA 1..357 18..372 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:43 Download gff for BO13341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 56..416 19..380 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:17 Download gff for BO13341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 56..416 19..380 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:17 Download gff for BO13341.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11562861..11563100 130..369 99 -> Minus
3L 11563303..11563413 19..129 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:43 Download gff for BO13341.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11555961..11556200 130..369 99 -> Minus
arm_3L 11556403..11556513 19..129 100   Minus

BO13341.complete Sequence

388 bp assembled on 2006-10-11

GenBank Submission: FJ632760

> BO13341.complete
GAAGTTATCAGTCGACATGGCGAGCTCCGTAATTCTGGCGGGTCTTAGCG
TGGCCGCCGTGGGATTCGCCGGAAAGCACCTGATGCGCCGCATGCCCCAG
ATGACCACCAAATTCAACGAGGCCCTCAAGAACCTGCCCAAATACGATGC
GGAGAGCATGGCCGCCTCCAAATACTACAAGGGCGGCTTCGATCCCAAGA
TGAACAAGCGGGAGGCGTCCCTAATCCTAGGTGTCAGCCCCAGTGCGTCC
AAGATAAAGATTAAGGACGCGCACAAGAAGATCATGCTGTTGAACCATCC
GGATCGAGGAGGATCTCCCTATTTGGCGGCCAAGATCAACGAGGCCAAAG
ACTTTCTGGACAAAGCGAAGGCAAGCTTTCTAGACCAT

BO13341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7394-RC 357 CG7394-PC 1..354 17..370 1770 100 Plus
CG7394-RD 357 CG7394-PD 1..354 17..370 1770 100 Plus
CG7394-RA 357 CG7394-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7394-RC 1315 CG7394-RC 63..416 17..370 1770 100 Plus
CG7394-RD 1431 CG7394-RD 179..532 17..370 1770 100 Plus
CG7394-RA 534 CG7394-RA 63..416 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11562860..11563100 19..259 1205 100 Plus
3L 28110227 3L 11563301..11563413 258..370 565 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:18:57 has no hits.

BO13341.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:47 Download gff for BO13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 1..357 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:07 Download gff for BO13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 50..410 9..370 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:01 Download gff for BO13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 63..416 17..372 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:47 Download gff for BO13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 50..410 9..370 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:41 Download gff for BO13341.complete
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 63..416 17..372 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:41 Download gff for BO13341.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11562858..11563100 17..259 99 -> Plus
3L 11563303..11563413 260..372 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:01 Download gff for BO13341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11555958..11556200 17..259 99 -> Plus
arm_3L 11556403..11556513 260..372 98   Plus

BO13341.pep Sequence

Translation from 16 to 388

> BO13341.pep
MASSVILAGLSVAAVGFAGKHLMRRMPQMTTKFNEALKNLPKYDAESMAA
SKYYKGGFDPKMNKREASLILGVSPSASKIKIKDAHKKIMLLNHPDRGGS
PYLAAKINEAKDFLDKAKASFLDH

BO13341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7394-PC 118 CG7394-PC 1..118 1..118 595 100 Plus
CG7394-PD 118 CG7394-PD 1..118 1..118 595 100 Plus
CG7394-PA 118 CG7394-PA 1..118 1..118 595 100 Plus
CG7394-PB 128 CG7394-PB 12..128 2..118 590 100 Plus
CG32727-PA 122 CG32727-PA 53..121 47..121 144 41.3 Plus