Clone BO13342 Report

Search the DGRC for BO13342

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:42
Vector:pDNR-Dual
Associated Gene/Transcriptbai-RA
Protein status:BO13342.pep: validated full length
Sequenced Size:652

Clone Sequence Records

BO13342.3prime Sequence

650 bp (649 high quality bases) assembled on 2006-05-08

> BO13342.3prime
ATGGTCTAGAAAGCTTGCTTCGATGAGTTTTTTGGCTTTGAAGTACCTGC
GGAGGTACAGAACTTGCCACGTCGCCAAGCCGAGCAGGCAGCACATGCTG
AAGATGCTGAAGAACAGCACGCGGCTGTTGGTTTTCTCATTGGTATCGCG
CATTTCCTCCTCCCGCTTGCGCATGAGAACGAAATCACGCACAATGGAGT
CGGAGAGATCCTCCAAACGCTTAAGATCAACTTCAAGGGGCTTCAGTTTG
GATGCTTCGCCAATGCCTTCGTAGCTCTTGGTCTCCACTCCCTTTTTGGT
CAAGAGCGATACTTCCTGTATAACGCCGCGTTGATGTGCAGGAACTTTGG
ATATAAAGCAGATTTCGTACGTATCGTACACCTCGGACATGAAGCTGAAC
TTGCCCTTAGTGATGTGCTCCTTCTGCGACAGGATGTGTCCCTTGGTGTC
GCGTGCAATGTAGTCGATGATCTGGCCGGGTACGTCGGAAACTTCGAACT
CGCCCATAACCAGTTGGTTCGCCTGGATGTCTTCCTTGAGGCACTTCTGG
GTGTTCGGCGACAGCTTGAACATCACCGCATGGCTGCTCCAGGCACAGGC
CATCAGTAGGCACACAATAAAAGCCGCCCTCGCCATGTCGACTGATAACT

BO13342.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11785-PA 621 bai-RA 1..618 636..19 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
bai-RA 807 CG11785-RA 77..694 636..19 3090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25039450..25039630 636..456 905 100 Minus
3R 32079331 3R 25040022..25040148 264..138 635 100 Minus
3R 32079331 3R 25039701..25039821 456..336 605 100 Minus
3R 32079331 3R 25040211..25040330 138..19 600 100 Minus
3R 32079331 3R 25039881..25039956 340..265 365 98.7 Minus
Blast to na_te.dros performed on 2015-02-10 15:09:30 has no hits.

BO13342.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:04 Download gff for BO13342.3prime
Subject Subject Range Query Range Percent Splice Strand
bai-PA 1..621 18..636 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:00 Download gff for BO13342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11785-PA 1..621 18..636 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:44 Download gff for BO13342.3prime
Subject Subject Range Query Range Percent Splice Strand
bai-RA 77..694 19..636 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:28 Download gff for BO13342.3prime
Subject Subject Range Query Range Percent Splice Strand
bai-RA 77..694 19..636 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:28 Download gff for BO13342.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25039450..25039629 457..636 100 -> Minus
3R 25039701..25039821 336..456 100 -> Minus
3R 25039886..25039956 265..335 100 -> Minus
3R 25040022..25040148 138..264 100 -> Minus
3R 25040212..25040332 20..137 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:44 Download gff for BO13342.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20865172..20865351 457..636 100 -> Minus
arm_3R 20865423..20865543 336..456 100 -> Minus
arm_3R 20865608..20865678 265..335 100 -> Minus
arm_3R 20865744..20865870 138..264 100 -> Minus
arm_3R 20865934..20866054 20..137 97 -> Minus

BO13342.5prime Sequence

651 bp (650 high quality bases) assembled on 2006-05-08

> BO13342.5prime
GAAGTTATCAGTCGACATGGCGAGGGCGGCTTTTATTGTGTGCCTACTGA
TGGCCTGTGCCTGGAGCAGCCATGCGGTGATGTTCAAGCTGTCGCCGAAC
ACCCAGAAGTGCCTCAAGGAAGACATCCAGGCGAACCAACTGGTTATGGG
CGAGTTCGAAGTTTCCGACGTACCCGGCCAGATCATCGACTACATTGCAC
GCGACACCAAGGGACACATCCTGTCGCAGAAGGAGCACATCACTAAGGGC
AAGTTCAGCTTCATGTCCGAGGTGTACGATACGTACGAAATCTGCTTTAT
ATCCAAAGTTCCTGCACATCAACGCGGCGTTATACAGGAAGTATCGCTCT
TGACCAAAAAGGGAGTGGAGACCAAGAGCTACGAAGGCATTGGCGAAGCA
TCCAAACTGAAGCCCCTTGAAGTTGATCTTAAGCGTTTGGAGGATCTCTC
CGACTCCATTGTGCGTGATTTCGTTCTCATGCGCAAGCGGGAGGAGGAAA
TGCGCGATACCAATGAGAAAACCAACAGCCGCGTGCTGTTCTTCAGCATC
TTCAGCATGTGCTGCCTGCTCGGCTTGGCGACGTGGCAAGTTCTGTACCT
CCGCAAGTACTTCAAAGCCAAAAAACTCATCGAAGCAAGCTTTTCTAAAC
C

BO13342.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11785-PA 621 bai-RA 1..618 17..634 3065 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
bai-RA 807 CG11785-RA 77..694 17..634 3075 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25039450..25039630 17..197 905 100 Plus
3R 32079331 3R 25040022..25040148 389..515 635 100 Plus
3R 32079331 3R 25039701..25039821 197..317 605 100 Plus
3R 32079331 3R 25040211..25040330 515..634 585 99.2 Plus
3R 32079331 3R 25039881..25039956 313..388 365 98.7 Plus
Blast to na_te.dros performed on 2015-02-12 19:06:11 has no hits.

BO13342.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:05 Download gff for BO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
bai-PA 1..621 17..635 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:02 Download gff for BO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11785-PA 1..621 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:55 Download gff for BO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
bai-RA 77..694 17..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:39 Download gff for BO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
bai-RA 77..694 17..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:39 Download gff for BO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25039450..25039629 17..196 100 -> Plus
3R 25039701..25039821 197..317 100 -> Plus
3R 25039886..25039956 318..388 100 -> Plus
3R 25040022..25040148 389..515 100 -> Plus
3R 25040212..25040330 516..634 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:55 Download gff for BO13342.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20865172..20865351 17..196 100 -> Plus
arm_3R 20865423..20865543 197..317 100 -> Plus
arm_3R 20865608..20865678 318..388 100 -> Plus
arm_3R 20865744..20865870 389..515 100 -> Plus
arm_3R 20865934..20866052 516..634 99   Plus

BO13342.complete Sequence

652 bp assembled on 2006-10-11

GenBank Submission: FJ632761

> BO13342.complete
GAAGTTATCAGTCGACATGGCGAGGGCGGCTTTTATTGTGTGCCTACTGA
TGGCCTGTGCCTGGAGCAGCCATGCGGTGATGTTCAAGCTGTCGCCGAAC
ACCCAGAAGTGCCTCAAGGAAGACATCCAGGCGAACCAACTGGTTATGGG
CGAGTTCGAAGTTTCCGACGTACCCGGCCAGATCATCGACTACATTGCAC
GCGACACCAAGGGACACATCCTGTCGCAGAAGGAGCACATCACTAAGGGC
AAGTTCAGCTTCATGTCCGAGGTGTACGATACGTACGAAATCTGCTTTAT
ATCCAAAGTTCCTGCACATCAACGCGGCGTTATACAGGAAGTATCGCTCT
TGACCAAAAAGGGAGTGGAGACCAAGAGCTACGAAGGCATTGGCGAAGCA
TCCAAACTGAAGCCCCTTGAAGTTGATCTTAAGCGTTTGGAGGATCTCTC
CGACTCCATTGTGCGTGATTTCGTTCTCATGCGCAAGCGGGAGGAGGAAA
TGCGCGATACCAATGAGAAAACCAACAGCCGCGTGCTGTTCTTCAGCATC
TTCAGCATGTGCTGCCTGCTCGGCTTGGCGACGTGGCAAGTTCTGTACCT
CCGCAGGTACTTCAAAGCCAAAAAACTCATCGAAGCAAGCTTTCTAGACC
AT

BO13342.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
bai-RA 621 CG11785-PA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
bai-RA 807 CG11785-RA 77..694 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25039450..25039630 17..197 905 100 Plus
3R 32079331 3R 25040022..25040148 389..515 635 100 Plus
3R 32079331 3R 25039701..25039821 197..317 605 100 Plus
3R 32079331 3R 25040211..25040330 515..634 600 100 Plus
3R 32079331 3R 25039881..25039956 313..388 365 98.7 Plus
Blast to na_te.dros performed on 2014-11-27 20:42:18 has no hits.

BO13342.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:48 Download gff for BO13342.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 1..621 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:09 Download gff for BO13342.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 76..693 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:08 Download gff for BO13342.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 77..694 17..636 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:48 Download gff for BO13342.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 76..693 17..634 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:41 Download gff for BO13342.complete
Subject Subject Range Query Range Percent Splice Strand
bai-RA 77..694 17..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:41 Download gff for BO13342.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25039450..25039629 17..196 100 -> Plus
3R 25039701..25039821 197..317 100 -> Plus
3R 25039886..25039956 318..388 100 -> Plus
3R 25040022..25040148 389..515 100 -> Plus
3R 25040212..25040330 516..636 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:08 Download gff for BO13342.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20865172..20865351 17..196 100 -> Plus
arm_3R 20865423..20865543 197..317 100 -> Plus
arm_3R 20865608..20865678 318..388 100 -> Plus
arm_3R 20865744..20865870 389..515 100 -> Plus
arm_3R 20865934..20866052 516..636 98   Plus

BO13342.pep Sequence

Translation from 16 to 652

> BO13342.pep
MARAAFIVCLLMACAWSSHAVMFKLSPNTQKCLKEDIQANQLVMGEFEVS
DVPGQIIDYIARDTKGHILSQKEHITKGKFSFMSEVYDTYEICFISKVPA
HQRGVIQEVSLLTKKGVETKSYEGIGEASKLKPLEVDLKRLEDLSDSIVR
DFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLGLATWQVLYLRRYFK
AKKLIEASFLDH

BO13342.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
bai-PA 206 CG11785-PA 1..206 1..206 1054 100 Plus
eca-PA 216 CG33104-PA 2..216 3..205 218 27.9 Plus
CHOp24-PB 208 CG3564-PB 5..208 1..205 186 23.6 Plus
CHOp24-PA 208 CG3564-PA 5..208 1..205 186 23.6 Plus
p24-2-PB 244 CG33105-PB 2..206 3..195 179 26.3 Plus