Clone Sequence Records
BO13342.3prime Sequence
650 bp (649 high quality bases) assembled on 2006-05-08
> BO13342.3prime
ATGGTCTAGAAAGCTTGCTTCGATGAGTTTTTTGGCTTTGAAGTACCTGC
GGAGGTACAGAACTTGCCACGTCGCCAAGCCGAGCAGGCAGCACATGCTG
AAGATGCTGAAGAACAGCACGCGGCTGTTGGTTTTCTCATTGGTATCGCG
CATTTCCTCCTCCCGCTTGCGCATGAGAACGAAATCACGCACAATGGAGT
CGGAGAGATCCTCCAAACGCTTAAGATCAACTTCAAGGGGCTTCAGTTTG
GATGCTTCGCCAATGCCTTCGTAGCTCTTGGTCTCCACTCCCTTTTTGGT
CAAGAGCGATACTTCCTGTATAACGCCGCGTTGATGTGCAGGAACTTTGG
ATATAAAGCAGATTTCGTACGTATCGTACACCTCGGACATGAAGCTGAAC
TTGCCCTTAGTGATGTGCTCCTTCTGCGACAGGATGTGTCCCTTGGTGTC
GCGTGCAATGTAGTCGATGATCTGGCCGGGTACGTCGGAAACTTCGAACT
CGCCCATAACCAGTTGGTTCGCCTGGATGTCTTCCTTGAGGCACTTCTGG
GTGTTCGGCGACAGCTTGAACATCACCGCATGGCTGCTCCAGGCACAGGC
CATCAGTAGGCACACAATAAAAGCCGCCCTCGCCATGTCGACTGATAACT
BO13342.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11785-PA | 621 | bai-RA | 1..618 | 636..19 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bai-RA | 807 | CG11785-RA | 77..694 | 636..19 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25039450..25039630 | 636..456 | 905 | 100 | Minus |
3R | 32079331 | 3R | 25040022..25040148 | 264..138 | 635 | 100 | Minus |
3R | 32079331 | 3R | 25039701..25039821 | 456..336 | 605 | 100 | Minus |
3R | 32079331 | 3R | 25040211..25040330 | 138..19 | 600 | 100 | Minus |
3R | 32079331 | 3R | 25039881..25039956 | 340..265 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:09:30 has no hits.
BO13342.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:04 Download gff for
BO13342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-PA | 1..621 | 18..636 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:00 Download gff for
BO13342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11785-PA | 1..621 | 18..636 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:44 Download gff for
BO13342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 77..694 | 19..636 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:28 Download gff for
BO13342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 77..694 | 19..636 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:28 Download gff for
BO13342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25039450..25039629 | 457..636 | 100 | -> | Minus |
3R | 25039701..25039821 | 336..456 | 100 | -> | Minus |
3R | 25039886..25039956 | 265..335 | 100 | -> | Minus |
3R | 25040022..25040148 | 138..264 | 100 | -> | Minus |
3R | 25040212..25040332 | 20..137 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:44 Download gff for
BO13342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20865172..20865351 | 457..636 | 100 | -> | Minus |
arm_3R | 20865423..20865543 | 336..456 | 100 | -> | Minus |
arm_3R | 20865608..20865678 | 265..335 | 100 | -> | Minus |
arm_3R | 20865744..20865870 | 138..264 | 100 | -> | Minus |
arm_3R | 20865934..20866054 | 20..137 | 97 | -> | Minus |
BO13342.5prime Sequence
651 bp (650 high quality bases) assembled on 2006-05-08
> BO13342.5prime
GAAGTTATCAGTCGACATGGCGAGGGCGGCTTTTATTGTGTGCCTACTGA
TGGCCTGTGCCTGGAGCAGCCATGCGGTGATGTTCAAGCTGTCGCCGAAC
ACCCAGAAGTGCCTCAAGGAAGACATCCAGGCGAACCAACTGGTTATGGG
CGAGTTCGAAGTTTCCGACGTACCCGGCCAGATCATCGACTACATTGCAC
GCGACACCAAGGGACACATCCTGTCGCAGAAGGAGCACATCACTAAGGGC
AAGTTCAGCTTCATGTCCGAGGTGTACGATACGTACGAAATCTGCTTTAT
ATCCAAAGTTCCTGCACATCAACGCGGCGTTATACAGGAAGTATCGCTCT
TGACCAAAAAGGGAGTGGAGACCAAGAGCTACGAAGGCATTGGCGAAGCA
TCCAAACTGAAGCCCCTTGAAGTTGATCTTAAGCGTTTGGAGGATCTCTC
CGACTCCATTGTGCGTGATTTCGTTCTCATGCGCAAGCGGGAGGAGGAAA
TGCGCGATACCAATGAGAAAACCAACAGCCGCGTGCTGTTCTTCAGCATC
TTCAGCATGTGCTGCCTGCTCGGCTTGGCGACGTGGCAAGTTCTGTACCT
CCGCAAGTACTTCAAAGCCAAAAAACTCATCGAAGCAAGCTTTTCTAAAC
C
BO13342.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11785-PA | 621 | bai-RA | 1..618 | 17..634 | 3065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bai-RA | 807 | CG11785-RA | 77..694 | 17..634 | 3075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25039450..25039630 | 17..197 | 905 | 100 | Plus |
3R | 32079331 | 3R | 25040022..25040148 | 389..515 | 635 | 100 | Plus |
3R | 32079331 | 3R | 25039701..25039821 | 197..317 | 605 | 100 | Plus |
3R | 32079331 | 3R | 25040211..25040330 | 515..634 | 585 | 99.2 | Plus |
3R | 32079331 | 3R | 25039881..25039956 | 313..388 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:06:11 has no hits.
BO13342.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:05 Download gff for
BO13342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-PA | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:02 Download gff for
BO13342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11785-PA | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:14:55 Download gff for
BO13342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 77..694 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:39 Download gff for
BO13342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 77..694 | 17..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:39 Download gff for
BO13342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25039450..25039629 | 17..196 | 100 | -> | Plus |
3R | 25039701..25039821 | 197..317 | 100 | -> | Plus |
3R | 25039886..25039956 | 318..388 | 100 | -> | Plus |
3R | 25040022..25040148 | 389..515 | 100 | -> | Plus |
3R | 25040212..25040330 | 516..634 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:14:55 Download gff for
BO13342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20865172..20865351 | 17..196 | 100 | -> | Plus |
arm_3R | 20865423..20865543 | 197..317 | 100 | -> | Plus |
arm_3R | 20865608..20865678 | 318..388 | 100 | -> | Plus |
arm_3R | 20865744..20865870 | 389..515 | 100 | -> | Plus |
arm_3R | 20865934..20866052 | 516..634 | 99 | | Plus |
BO13342.complete Sequence
652 bp assembled on 2006-10-11
GenBank Submission: FJ632761
> BO13342.complete
GAAGTTATCAGTCGACATGGCGAGGGCGGCTTTTATTGTGTGCCTACTGA
TGGCCTGTGCCTGGAGCAGCCATGCGGTGATGTTCAAGCTGTCGCCGAAC
ACCCAGAAGTGCCTCAAGGAAGACATCCAGGCGAACCAACTGGTTATGGG
CGAGTTCGAAGTTTCCGACGTACCCGGCCAGATCATCGACTACATTGCAC
GCGACACCAAGGGACACATCCTGTCGCAGAAGGAGCACATCACTAAGGGC
AAGTTCAGCTTCATGTCCGAGGTGTACGATACGTACGAAATCTGCTTTAT
ATCCAAAGTTCCTGCACATCAACGCGGCGTTATACAGGAAGTATCGCTCT
TGACCAAAAAGGGAGTGGAGACCAAGAGCTACGAAGGCATTGGCGAAGCA
TCCAAACTGAAGCCCCTTGAAGTTGATCTTAAGCGTTTGGAGGATCTCTC
CGACTCCATTGTGCGTGATTTCGTTCTCATGCGCAAGCGGGAGGAGGAAA
TGCGCGATACCAATGAGAAAACCAACAGCCGCGTGCTGTTCTTCAGCATC
TTCAGCATGTGCTGCCTGCTCGGCTTGGCGACGTGGCAAGTTCTGTACCT
CCGCAGGTACTTCAAAGCCAAAAAACTCATCGAAGCAAGCTTTCTAGACC
AT
BO13342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bai-RA | 621 | CG11785-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bai-RA | 807 | CG11785-RA | 77..694 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25039450..25039630 | 17..197 | 905 | 100 | Plus |
3R | 32079331 | 3R | 25040022..25040148 | 389..515 | 635 | 100 | Plus |
3R | 32079331 | 3R | 25039701..25039821 | 197..317 | 605 | 100 | Plus |
3R | 32079331 | 3R | 25040211..25040330 | 515..634 | 600 | 100 | Plus |
3R | 32079331 | 3R | 25039881..25039956 | 313..388 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:42:18 has no hits.
BO13342.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:48 Download gff for
BO13342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:09 Download gff for
BO13342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 76..693 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:08 Download gff for
BO13342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 77..694 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:48 Download gff for
BO13342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 76..693 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:41 Download gff for
BO13342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bai-RA | 77..694 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:41 Download gff for
BO13342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25039450..25039629 | 17..196 | 100 | -> | Plus |
3R | 25039701..25039821 | 197..317 | 100 | -> | Plus |
3R | 25039886..25039956 | 318..388 | 100 | -> | Plus |
3R | 25040022..25040148 | 389..515 | 100 | -> | Plus |
3R | 25040212..25040330 | 516..636 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:08 Download gff for
BO13342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20865172..20865351 | 17..196 | 100 | -> | Plus |
arm_3R | 20865423..20865543 | 197..317 | 100 | -> | Plus |
arm_3R | 20865608..20865678 | 318..388 | 100 | -> | Plus |
arm_3R | 20865744..20865870 | 389..515 | 100 | -> | Plus |
arm_3R | 20865934..20866052 | 516..636 | 98 | | Plus |
BO13342.pep Sequence
Translation from 16 to 652
> BO13342.pep
MARAAFIVCLLMACAWSSHAVMFKLSPNTQKCLKEDIQANQLVMGEFEVS
DVPGQIIDYIARDTKGHILSQKEHITKGKFSFMSEVYDTYEICFISKVPA
HQRGVIQEVSLLTKKGVETKSYEGIGEASKLKPLEVDLKRLEDLSDSIVR
DFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLGLATWQVLYLRRYFK
AKKLIEASFLDH
BO13342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bai-PA | 206 | CG11785-PA | 1..206 | 1..206 | 1054 | 100 | Plus |
eca-PA | 216 | CG33104-PA | 2..216 | 3..205 | 218 | 27.9 | Plus |
CHOp24-PB | 208 | CG3564-PB | 5..208 | 1..205 | 186 | 23.6 | Plus |
CHOp24-PA | 208 | CG3564-PA | 5..208 | 1..205 | 186 | 23.6 | Plus |
p24-2-PB | 244 | CG33105-PB | 2..206 | 3..195 | 179 | 26.3 | Plus |