Clone BO13344 Report

Search the DGRC for BO13344

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:133
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG31917-RA
Protein status:BO13344.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO13344.3prime Sequence

485 bp (484 high quality bases) assembled on 2006-05-08

> BO13344.3prime
ATGGTCTAGAAAGCTTGCGGCCGTCCACTTGAGGCAGCGCGTGTCCTGGT
GCGTTTGCAGGCATCTAACGCAACAGTATCGCGTTCCGCAGGCGGTGCAC
GAGTACAACGAGAAGTTGCCGCAAACGGCGCAGAAATGCCGCAGTGGCTT
TTGTGGAGCCGGCGCTGCGGCGCTCTCGTAGTTGGGCTGCTTGTCCTTGT
CCTCCTCGAGCAGTTGCTGGAAGTTCTTGCGATACTTGACGAGAAAGTAT
TCGGCGCCCTTGCGCTTGCCTTTCTTCTCCTTGCCGGTCTTCAGGCTGTC
CTGGAATTTGGGCAACTTCTTGGACATGACAAGGTCGGCGTGTGGGTCAT
CGTGGTAGTTGTCCTGCTCCAGAGCCTCCAAGGCTTTGCGGGCACGCCGC
TGGCGGGCTGTGGAGTCCAGGACACGCTTCTTTTCAGCGTCCTTGATGCG
GTTGGATTCGCGACCCGTCATGTCGACTGATAACT

BO13344.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31917-PA 456 CG31917-RA 1..453 471..19 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31917-RA 846 CG31917-RA 344..797 472..19 2270 100 Minus
Tfb5-RB 846 CG42373-RB 344..797 472..19 2270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5009980..5010433 19..472 2270 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:18:22 has no hits.

BO13344.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:08 Download gff for BO13344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31917-PA 1..456 16..471 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:06 Download gff for BO13344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31917-PA 1..456 16..471 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:20 Download gff for BO13344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31917-RA 340..802 13..479 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:19 Download gff for BO13344.3prime
Subject Subject Range Query Range Percent Splice Strand
Tfb5-RB 340..802 13..479 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:19 Download gff for BO13344.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5009975..5010437 13..479 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:20 Download gff for BO13344.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5009975..5010437 13..479 98   Plus

BO13344.5prime Sequence

485 bp (484 high quality bases) assembled on 2006-05-08

> BO13344.5prime
GAAGTTATCACTCGACATGACGGGTCGCGAATCCAACCGCATCAAGGACG
CTGAAAAGAAGCGTGTCCTGGACTCCACAGCCCGCCAGCGGCGTGCCCGC
AAAGCCTTGGAGGCTCTGGAGCAGGACAACTACCACGATGACCCACACGC
CGACCTTGTCATGTCCAAGAAGTTGCCCAAATTCCAGGACAGCCTGAAGA
CCGGCAAGGAGAAGAAAGGCAAGCGCAAGGGCGCCGAATACTTTCTCGTC
AAGTATCGCAAGAACTTCCAGCAACTGCTCGAGGAGGACAAGGACAAGCA
GCCCAACTACGAGAGCGCCGCAGCGCCGGCTCCACAAAAGCCACTGCGGC
ATTTCTGCGCCGTTTGCGGCAACTTCTCGTTGTACTCGTGCACCGCCTGC
GGAACGCGATACTGTTGCGTTAGATGCCTGCAAACGCACCAGGACACGCG
CTGCCTCAAGTGGACGGCCGCAAGCTTTCTAGACC

BO13344.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31917-PA 456 CG31917-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31917-RA 846 CG31917-RA 344..797 16..469 2270 100 Plus
Tfb5-RB 846 CG42373-RB 344..797 16..469 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5009980..5010433 469..16 2270 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:27:19 has no hits.

BO13344.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:09 Download gff for BO13344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31917-PA 1..456 17..472 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:08 Download gff for BO13344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31917-PA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:28 Download gff for BO13344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31917-RA 340..802 9..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:10 Download gff for BO13344.5prime
Subject Subject Range Query Range Percent Splice Strand
Tfb5-RB 340..802 9..475 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:10 Download gff for BO13344.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5009975..5010437 9..475 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:28 Download gff for BO13344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5009975..5010437 9..475 98   Minus

BO13344.complete Sequence

487 bp assembled on 2006-10-11

GenBank Submission: FJ632762

> BO13344.complete
GAAGTTATCAGTCGACATGACGGGTCGCGAATCCAACCGCATCAAGGACG
CTGAAAAGAAGCGTGTCCTGGACTCCACAGCCCGCCAGCGGCGTGCCCGC
AAAGCCTTGGAGGCTCTGGAGCAGGACAACTACCACGATGACCCACACGC
CGACCTTGTCATGTCCAAGAAGTTGCCCAAATTCCAGGACAGCCTGAAGA
CCGGCAAGGAGAAGAAAGGCAAGCGCAAGGGCGCCGAATACTTTCTCGTC
AAGTATCGCAAGAACTTCCAGCAACTGCTCGAGGAGGACAAGGACAAGCA
GCCCAACTACGAGAGCGCCGCAGCGCCGGCTCCACAAAAGCCACTGCGGC
ATTTCTGCGCCGTTTGCGGCAACTTCTCGTTGTACTCGTGCACCGCCTGC
GGAACGCGATACTGTTGCGTTAGATGCCTGCAAACGCACCAGGACACGCG
CTGCCTCAAGTGGACGGCCGCAAGCTTTCTAGACCAT

BO13344.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31917-RA 456 CG31917-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31917-RA 846 CG31917-RA 344..797 16..469 2270 100 Plus
Tfb5-RB 846 CG42373-RB 344..797 16..469 2270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5009980..5010433 469..16 2270 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:44:14 has no hits.

BO13344.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:49 Download gff for BO13344.complete
Subject Subject Range Query Range Percent Splice Strand
CG31917-RA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:11 Download gff for BO13344.complete
Subject Subject Range Query Range Percent Splice Strand
CG42373-RA 331..793 9..475 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:40 Download gff for BO13344.complete
Subject Subject Range Query Range Percent Splice Strand
CG31917-RA 345..797 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:50 Download gff for BO13344.complete
Subject Subject Range Query Range Percent Splice Strand
CG31917-RA 331..793 9..475 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:21 Download gff for BO13344.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb5-RB 345..797 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:21 Download gff for BO13344.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5009977..5010432 17..471 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:40 Download gff for BO13344.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5009977..5010432 17..471 99   Minus

BO13344.pep Sequence

Translation from 16 to 487

> BO13344.pep
MTGRESNRIKDAEKKRVLDSTARQRRARKALEALEQDNYHDDPHADLVMS
KKLPKFQDSLKTGKEKKGKRKGAEYFLVKYRKNFQQLLEEDKDKQPNYES
AAAPAPQKPLRHFCAVCGNFSLYSCTACGTRYCCVRCLQTHQDTRCLKWT
AASFLDH

BO13344.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31917-PA 151 CG31917-PA 1..151 1..151 815 100 Plus