Clone Sequence Records
BO13344.3prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-08
> BO13344.3prime
ATGGTCTAGAAAGCTTGCGGCCGTCCACTTGAGGCAGCGCGTGTCCTGGT
GCGTTTGCAGGCATCTAACGCAACAGTATCGCGTTCCGCAGGCGGTGCAC
GAGTACAACGAGAAGTTGCCGCAAACGGCGCAGAAATGCCGCAGTGGCTT
TTGTGGAGCCGGCGCTGCGGCGCTCTCGTAGTTGGGCTGCTTGTCCTTGT
CCTCCTCGAGCAGTTGCTGGAAGTTCTTGCGATACTTGACGAGAAAGTAT
TCGGCGCCCTTGCGCTTGCCTTTCTTCTCCTTGCCGGTCTTCAGGCTGTC
CTGGAATTTGGGCAACTTCTTGGACATGACAAGGTCGGCGTGTGGGTCAT
CGTGGTAGTTGTCCTGCTCCAGAGCCTCCAAGGCTTTGCGGGCACGCCGC
TGGCGGGCTGTGGAGTCCAGGACACGCTTCTTTTCAGCGTCCTTGATGCG
GTTGGATTCGCGACCCGTCATGTCGACTGATAACT
BO13344.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31917-PA | 456 | CG31917-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31917-RA | 846 | CG31917-RA | 344..797 | 472..19 | 2270 | 100 | Minus |
Tfb5-RB | 846 | CG42373-RB | 344..797 | 472..19 | 2270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5009980..5010433 | 19..472 | 2270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:18:22 has no hits.
BO13344.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:08 Download gff for
BO13344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-PA | 1..456 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:06 Download gff for
BO13344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-PA | 1..456 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:20 Download gff for
BO13344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-RA | 340..802 | 13..479 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:19 Download gff for
BO13344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb5-RB | 340..802 | 13..479 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:19 Download gff for
BO13344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5009975..5010437 | 13..479 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:20 Download gff for
BO13344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5009975..5010437 | 13..479 | 98 | | Plus |
BO13344.5prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-08
> BO13344.5prime
GAAGTTATCACTCGACATGACGGGTCGCGAATCCAACCGCATCAAGGACG
CTGAAAAGAAGCGTGTCCTGGACTCCACAGCCCGCCAGCGGCGTGCCCGC
AAAGCCTTGGAGGCTCTGGAGCAGGACAACTACCACGATGACCCACACGC
CGACCTTGTCATGTCCAAGAAGTTGCCCAAATTCCAGGACAGCCTGAAGA
CCGGCAAGGAGAAGAAAGGCAAGCGCAAGGGCGCCGAATACTTTCTCGTC
AAGTATCGCAAGAACTTCCAGCAACTGCTCGAGGAGGACAAGGACAAGCA
GCCCAACTACGAGAGCGCCGCAGCGCCGGCTCCACAAAAGCCACTGCGGC
ATTTCTGCGCCGTTTGCGGCAACTTCTCGTTGTACTCGTGCACCGCCTGC
GGAACGCGATACTGTTGCGTTAGATGCCTGCAAACGCACCAGGACACGCG
CTGCCTCAAGTGGACGGCCGCAAGCTTTCTAGACC
BO13344.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31917-PA | 456 | CG31917-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31917-RA | 846 | CG31917-RA | 344..797 | 16..469 | 2270 | 100 | Plus |
Tfb5-RB | 846 | CG42373-RB | 344..797 | 16..469 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5009980..5010433 | 469..16 | 2270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:27:19 has no hits.
BO13344.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:01:09 Download gff for
BO13344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-PA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:46:08 Download gff for
BO13344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-PA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:28 Download gff for
BO13344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-RA | 340..802 | 9..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:10 Download gff for
BO13344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb5-RB | 340..802 | 9..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:10 Download gff for
BO13344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5009975..5010437 | 9..475 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:28 Download gff for
BO13344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5009975..5010437 | 9..475 | 98 | | Minus |
BO13344.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ632762
> BO13344.complete
GAAGTTATCAGTCGACATGACGGGTCGCGAATCCAACCGCATCAAGGACG
CTGAAAAGAAGCGTGTCCTGGACTCCACAGCCCGCCAGCGGCGTGCCCGC
AAAGCCTTGGAGGCTCTGGAGCAGGACAACTACCACGATGACCCACACGC
CGACCTTGTCATGTCCAAGAAGTTGCCCAAATTCCAGGACAGCCTGAAGA
CCGGCAAGGAGAAGAAAGGCAAGCGCAAGGGCGCCGAATACTTTCTCGTC
AAGTATCGCAAGAACTTCCAGCAACTGCTCGAGGAGGACAAGGACAAGCA
GCCCAACTACGAGAGCGCCGCAGCGCCGGCTCCACAAAAGCCACTGCGGC
ATTTCTGCGCCGTTTGCGGCAACTTCTCGTTGTACTCGTGCACCGCCTGC
GGAACGCGATACTGTTGCGTTAGATGCCTGCAAACGCACCAGGACACGCG
CTGCCTCAAGTGGACGGCCGCAAGCTTTCTAGACCAT
BO13344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31917-RA | 456 | CG31917-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31917-RA | 846 | CG31917-RA | 344..797 | 16..469 | 2270 | 100 | Plus |
Tfb5-RB | 846 | CG42373-RB | 344..797 | 16..469 | 2270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5009980..5010433 | 469..16 | 2270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:44:14 has no hits.
BO13344.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:49 Download gff for
BO13344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-RA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:11 Download gff for
BO13344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42373-RA | 331..793 | 9..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:40 Download gff for
BO13344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-RA | 345..797 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:50 Download gff for
BO13344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31917-RA | 331..793 | 9..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:21 Download gff for
BO13344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tfb5-RB | 345..797 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:21 Download gff for
BO13344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5009977..5010432 | 17..471 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:40 Download gff for
BO13344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5009977..5010432 | 17..471 | 99 | | Minus |
BO13344.pep Sequence
Translation from 16 to 487
> BO13344.pep
MTGRESNRIKDAEKKRVLDSTARQRRARKALEALEQDNYHDDPHADLVMS
KKLPKFQDSLKTGKEKKGKRKGAEYFLVKYRKNFQQLLEEDKDKQPNYES
AAAPAPQKPLRHFCAVCGNFSLYSCTACGTRYCCVRCLQTHQDTRCLKWT
AASFLDH
BO13344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31917-PA | 151 | CG31917-PA | 1..151 | 1..151 | 815 | 100 | Plus |